Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003920

Physical Location & Seq

Genomic Coordinates Reverse (-)

21364068 .. 21367194

Gene Structure 3127 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37449

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGGCTGCGTCGTCACTACTGTTTTCATCCCAAGGGATCATGTCGTTTCACAAAACAACAATGTGCTATAAAGACTTCAGGAGCAGTTATCTAGATGTTGTCTGCAAACAATCTGGTCGCTCCAACTTTATGTGCTTAGCACGGTCAAGGTTGTTACCCAATGAGACATTATCAAAATGTGAACAGGTTGTGAAATTCTCACAGAAGAATGACTTTTTGTGCCGTGCATTGAAAGTTGAAAATTCATCTTCCTTTTCGACAGGGAAGAAGTTTCAACTTGATGATGTGATTGAAGCTCAACAATTTGATAGAGATATTCTCAGTGCCATTTTTGAAGTTGCACGTGGTATGGAGAAGATTGAGAAGAATTCTCTGGGAAGCCAAATTCTTAAGGGTTATCTTATGGCTACTCTCTTTTATGAACCCTCCACTAGAACTAGACTTTCATTTGAGTCTGCCATGAAACGGTTGGGCGGGGAAGTTTTGACTACTGAAAATGCAAGGGAGTTTTCTTCAGCAGCTAAAGGAGAAACTCTTGAAGATTCTATAAGAACTGTTGAAGGTTACTCAGATATAATTGTAATGCGTCACTTTGAGAGTGGCGCAGCAAAAAGAGCTGCAGCAACTGCTGCCATTCCTATAATTAATGCAGGAGATGGTCCTGGACAACATCCAACGCAGGCTCTTTTAGATGTCTACACTATTGAAAGGGAGATAGGAAAGCTAGATGGAATTAGAGTTGCGCTTGTTGGTGATCTTGCTAACGGAAGGACTGTGCGCTCACTGGCATACTTGCTTGCTAGGTATAATGATGTGAAGATCTATTTCGTATCTCCTGATGCGGTTAAAATGAAGGATGATATAAAAGATTATTTGACGTCAAAGAAAGTTGAGTGGGAAGAAAGTGGTGATTTGATGGAAGTTGCTTCCAAGTGTGATGTTCTTTATCAAACTCGCATTCAACGTGAACGGTTTGGAGAAAGAATTGACCTCTATGAAGAAGCTCGAGGCAAGTACATTGTGGACCATCATGTGTTGGATGTGATGCAGAAGCATGCTGTGGTCATGCACCCGCTGCCTAGACTTGATGAGATTACTGTGGATGTTGATGGGGATCCGAGAGCTGCCTATTTCAGACAAGCAAAGAACGGCCTATACATTAGGATGGCACTGTTGAAACTACTACTTGTAGGGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004070 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006220 GO:0006221 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009165 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009267 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016740 GO:0016741 GO:0016743 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034641 GO:0034654 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046390 GO:0046483 GO:0050896 GO:0051716 GO:0055086 GO:0071496 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00240 ko00250 ko01100 map00240 map00250 map01100

Pfam Domains

Protein Families

OTCace OTCace_N

Protein Analysis

399

Amino Acids

44.97

Weight (kDa)

7.6

Isoelectric Point (pI)

32.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OTCace_N	PF02729	95 - 236	3.5e-44	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
OTCace	PF00185	243 - 394	3.1e-32	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20330 AT3G20330
fragaria_vesca	FvH4_4g09330 FvH4_4g09330 FvH4_4g09330 FvH4_4g09330 FvH4_4g09330 FvH4_4g09330 FvH4_7g16631 FvH4_7g16631
malus_domestica	MD15G1397500.v1.1
prunus_persica	Prupe.4G221200_v2.0.a1
pyrus_communis	pycom15g35730
rosa_chinensis	RchiOBHm_Chr4g0402721 RchiOBHm_Chr6g0264841
rosa_laevigata	RLG00000009051 RLG00000014232
rosa_multiflora	Rmu_sc0000546.1_g000042 Rmu_sc0002451.1_g000002
rosa_roxburghii	Rroxscaffold_175G00432030 Rroxscaffold_5G00347480 Rroxscaffold_7G00203190
rosa_rugosa	Rorug04G0038000 Rorug06G0014400
rosa_samantha	Rh4AG115600 Rh4BG108100 Rh4CG122500 Rh4DG108100 Rh6AG134700 Rh6BG132300 Rh6CG130900 Rh6DG117900
rosa_wichuraiana	Rw4G009240 Rw6G011660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	881
AccI	GTMKAC	1 cut(s)	696
AciI	CCGC	3 cut(s)	474, 842, 1073
AclWI	GGATC	3 cut(s)	44, 1109, 1122
AcsI	RAATTY	4 cut(s)	194, 241, 367, 384
AcuI	CTGAAG	2 cut(s)	61, 498
AcvI	CACGTG	1 cut(s)	344
AcyI	GRCGYC	1 cut(s)	878
AfaI	GTAC	1 cut(s)	1016
AfiI	CCNNNNNNNGG	1 cut(s)	465
AflII	CTTAAG	1 cut(s)	389
AjnI	CCWGG	1 cut(s)	661
AluBI	AGCT	6 cut(s)	296, 521, 617, 724, 1004, 1124
AluI	AGCT	6 cut(s)	296, 521, 617, 724, 1004, 1124
Alw26I	GTCTC	1 cut(s)	158
AlwI	GGATC	3 cut(s)	44, 1109, 1122
AlwNI	CAGNNNCTG	1 cut(s)	626
Ama87I	CYCGRG	1 cut(s)	1005
AoxI	GGCC	1 cut(s)	1150
ApeKI	GCWGC	8 cut(s)	5, 518, 605, 617, 620, 629, 1075, 1124
ApoI	RAATTY	4 cut(s)	194, 241, 367, 384
AseI	ATTAAT	1 cut(s)	645
AspLEI	GCGC	3 cut(s)	605, 745, 780
AspS9I	GGNCC	2 cut(s)	659, 1024
AsuHPI	GGTGA	2 cut(s)	764, 920
AvaI	CYCGRG	1 cut(s)	1005
AvaII	GGWCC	2 cut(s)	659, 1024
BamHI	GGATCC	1 cut(s)	1114
BbrPI	CACGTG	1 cut(s)	344
BbvI	GCAGC	7 cut(s)	530, 604, 616, 617, 632, 1062, 1111
BccI	CCATC	6 cut(s)	650, 722, 910, 1035, 1103, 1159
BceAI	ACGGC	2 cut(s)	207, 1165
BciT130I	CCWGG	1 cut(s)	663
BcoDI	GTCTC	1 cut(s)	158
BfaI	CTAG	6 cut(s)	92, 432, 438, 725, 801, 1080
BfmI	CTRYAG	1 cut(s)	618
BfrI	CTTAAG	1 cut(s)	389
BglII	AGATCT	1 cut(s)	819
BisI	GCNGC	8 cut(s)	6, 519, 606, 618, 621, 630, 1076, 1125
BlpI	GCTNAGC	1 cut(s)	136
BlsI	GCNGC	8 cut(s)	7, 520, 607, 619, 622, 631, 1077, 1126
Bme1390I	CCNGG	1 cut(s)	663
Bme18I	GGWCC	2 cut(s)	659, 1024
BmeT110I	CYCGRG	1 cut(s)	1005
BmgT120I	GGNCC	2 cut(s)	659, 1024
BmiI	GGNNCC	1 cut(s)	1116
BmrFI	CCNGG	1 cut(s)	663
BmsI	GCATC	2 cut(s)	829, 1035
BplI	GAGNNNNNCTC	2 cut(s)	303, 335
Bpu1102I	GCTNAGC	1 cut(s)	136
BsaAI	YACGTR	1 cut(s)	344
BsaBI	GATNNNNATC	1 cut(s)	1113
BsaHI	GRCGYC	1 cut(s)	878
BsaJI	CCNNGG	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	1 cut(s)	465
Bse1I	ACTGG	1 cut(s)	789
Bse8I	GATNNNNATC	1 cut(s)	1113
BseBI	CCWGG	1 cut(s)	663
BseDI	CCNNGG	1 cut(s)	31
BseGI	GGATG	6 cut(s)	26, 670, 862, 1045, 1108, 1170
BseJI	GATNNNNATC	1 cut(s)	1113
BseLI	CCNNNNNNNGG	1 cut(s)	465
BseMII	CTCAG	2 cut(s)	334, 582
BseNI	ACTGG	1 cut(s)	789
BseXI	GCAGC	7 cut(s)	530, 604, 616, 617, 632, 1062, 1111
BshFI	GGCC	1 cut(s)	1152
BsiHKCI	CYCGRG	1 cut(s)	1005
BslI	CCNNNNNNNGG	1 cut(s)	465
BsmAI	GTCTC	1 cut(s)	158
BsmI	GAATGC	1 cut(s)	957
BsnI	GGCC	1 cut(s)	1152
BsoBI	CYCGRG	1 cut(s)	1005
Bsp143I	GATC	4 cut(s)	36, 754, 819, 1114
Bsp1720I	GCTNAGC	1 cut(s)	136
BspACI	CCGC	3 cut(s)	474, 842, 1073
BspANI	GGCC	1 cut(s)	1152
BspCNI	CTCAG	2 cut(s)	333, 581
BspLI	GGNNCC	1 cut(s)	1116
BspMAI	CTGCAG	1 cut(s)	622
BspPI	GGATC	3 cut(s)	44, 1109, 1122
BspTI	CTTAAG	1 cut(s)	389
BsrI	ACTGG	1 cut(s)	789
BssECI	CCNNGG	1 cut(s)	31
BssMI	GATC	4 cut(s)	36, 754, 819, 1114
BssNI	GRCGYC	1 cut(s)	878
BssT1I	CCWWGG	1 cut(s)	31
Bst2UI	CCWGG	1 cut(s)	663
Bst4CI	ACNGT	8 cut(s)	21, 144, 468, 556, 775, 972, 1099, 1173
BstACI	GRCGYC	1 cut(s)	878
BstAFI	CTTAAG	1 cut(s)	389
BstAPI	GCANNNNNTGC	3 cut(s)	626, 629, 1075
BstBAI	YACGTR	1 cut(s)	344
BstC8I	GCNNGC	3 cut(s)	681, 798, 1056
BstDEI	CTNAG	3 cut(s)	136, 320, 568
BstF5I	GGATG	6 cut(s)	26, 670, 862, 1045, 1108, 1170
BstHHI	GCGC	3 cut(s)	605, 745, 780
BstKTI	GATC	4 cut(s)	39, 757, 822, 1117
BstMAI	GTCTC	1 cut(s)	158
BstMBI	GATC	4 cut(s)	36, 754, 819, 1114
BstMWI	GCNNNNNNNGC	4 cut(s)	614, 626, 629, 1075
BstNI	CCWGG	1 cut(s)	663
BstNSI	RCATGY	1 cut(s)	1058
BstSCI	CCNGG	1 cut(s)	661
BstSFI	CTRYAG	1 cut(s)	618
BstV1I	GCAGC	7 cut(s)	530, 604, 616, 617, 632, 1062, 1111
BstX2I	RGATCY	2 cut(s)	819, 1114
BstYI	RGATCY	2 cut(s)	819, 1114
BsuRI	GGCC	1 cut(s)	1152
BtsCI	GGATG	6 cut(s)	26, 670, 862, 1045, 1108, 1170
BtsIMutI	CAGTG	3 cut(s)	328, 782, 1169
Cac8I	GCNNGC	3 cut(s)	681, 798, 1056
CaiI	CAGNNNCTG	1 cut(s)	626
CfoI	GCGC	3 cut(s)	605, 745, 780
Cfr13I	GGNCC	2 cut(s)	659, 1024
CseI	GACGC	1 cut(s)	575
Csp6I	GTAC	1 cut(s)	1015
CviAII	CATG	5 cut(s)	40, 460, 1031, 1055, 1066
CviQI	GTAC	1 cut(s)	1015
DdeI	CTNAG	3 cut(s)	136, 320, 568
DpnI	GATC	4 cut(s)	38, 756, 821, 1116
DpnII	GATC	4 cut(s)	36, 754, 819, 1114
Eco130I	CCWWGG	1 cut(s)	31
Eco47I	GGWCC	2 cut(s)	659, 1024
Eco57I	CTGAAG	2 cut(s)	61, 498
Eco72I	CACGTG	1 cut(s)	344
Eco88I	CYCGRG	1 cut(s)	1005
EcoRI	GAATTC	1 cut(s)	367
EcoRII	CCWGG	1 cut(s)	661
EcoT14I	CCWWGG	1 cut(s)	31
ErhI	CCWWGG	1 cut(s)	31
FaeI	CATG	5 cut(s)	43, 463, 1034, 1058, 1069
FalI	AAGNNNNNCTT	2 cut(s)	197, 229
FatI	CATG	5 cut(s)	39, 459, 1030, 1054, 1065
FauI	CCCGC	2 cut(s)	467, 1080
FblI	GTMKAC	1 cut(s)	696
Fnu4HI	GCNGC	8 cut(s)	6, 519, 606, 618, 621, 630, 1076, 1125
FokI	GGATG	6 cut(s)	13, 657, 869, 1052, 1115, 1177
Fsp4HI	GCNGC	8 cut(s)	6, 519, 606, 618, 621, 630, 1076, 1125
FspBI	CTAG	6 cut(s)	92, 432, 438, 725, 801, 1080
GlaI	GCGC	3 cut(s)	604, 744, 779
GluI	GCNGC	8 cut(s)	6, 519, 606, 618, 621, 630, 1076, 1125
HaeIII	GGCC	1 cut(s)	1152
HgaI	GACGC	1 cut(s)	575
HhaI	GCGC	3 cut(s)	605, 745, 780
Hin1I	GRCGYC	1 cut(s)	878
Hin1II	CATG	5 cut(s)	43, 463, 1034, 1058, 1069
Hin6I	GCGC	3 cut(s)	603, 743, 778
HinP1I	GCGC	3 cut(s)	603, 743, 778
HinfI	GANTC	2 cut(s)	452, 542
HphI	GGTGA	2 cut(s)	764, 920
Hpy166II	GTNNAC	4 cut(s)	182, 697, 968, 1024
Hpy188I	TCNGA	3 cut(s)	571, 1119, 1136
Hpy188III	TCNNGA	4 cut(s)	79, 92, 536, 836
Hpy8I	GTNNAC	4 cut(s)	182, 697, 968, 1024
Hpy99I	CGWCG	1 cut(s)	13
HpyAV	CCTTC	3 cut(s)	554, 762, 847
HpyCH4III	ACNGT	8 cut(s)	21, 144, 468, 556, 775, 972, 1099, 1173
HpyCH4IV	ACGT	3 cut(s)	343, 878, 964
HpyCH4V	TGCA	8 cut(s)	105, 227, 341, 500, 620, 650, 1048, 1069
HpyF10VI	GCNNNNNNNGC	4 cut(s)	614, 626, 629, 1075
HpyF3I	CTNAG	3 cut(s)	136, 320, 568
HpySE526I	ACGT	3 cut(s)	343, 878, 964
Hsp92I	GRCGYC	1 cut(s)	878
Hsp92II	CATG	5 cut(s)	43, 463, 1034, 1058, 1069
HspAI	GCGC	3 cut(s)	603, 743, 778
Kzo9I	GATC	4 cut(s)	36, 754, 819, 1114
LmnI	GCTCC	2 cut(s)	81, 125
Lsp1109I	GCAGC	7 cut(s)	530, 604, 616, 617, 632, 1062, 1111
LweI	GCATC	2 cut(s)	829, 1035
MaeI	CTAG	6 cut(s)	92, 432, 438, 725, 801, 1080
MaeII	ACGT	3 cut(s)	343, 878, 964
MaeIII	GTNAC	4 cut(s)	12, 153, 563, 587
MalI	GATC	4 cut(s)	38, 756, 821, 1116
MboI	GATC	4 cut(s)	36, 754, 819, 1114
MflI	RGATCY	2 cut(s)	819, 1114
MluCI	AATT	9 cut(s)	194, 241, 302, 367, 384, 576, 642, 732, 984
MlyI	GAGTC	1 cut(s)	461
MmeI	TCCRAC	3 cut(s)	147, 698, 1017
MnlI	CCTC	3 cut(s)	436, 1001, 1001
MseI	TTAA	3 cut(s)	390, 645, 846
MslI	CAYNNNNRTG	1 cut(s)	1163
MspA1I	CMGCKG	1 cut(s)	1075
MspCI	CTTAAG	1 cut(s)	389
MspR9I	CCNGG	1 cut(s)	663
Mva1269I	GAATGC	1 cut(s)	957
MvaI	CCWGG	1 cut(s)	663
MwoI	GCNNNNNNNGC	4 cut(s)	614, 626, 629, 1075
NdeII	GATC	4 cut(s)	36, 754, 819, 1114
NlaIII	CATG	5 cut(s)	43, 463, 1034, 1058, 1069
NlaIV	GGNNCC	1 cut(s)	1116
NmuCI	GTSAC	2 cut(s)	12, 587
NspI	RCATGY	1 cut(s)	1058
PaeI	GCATGC	1 cut(s)	1058
PaeR7I	CTCGAG	1 cut(s)	1005
PcsI	WCGNNNNNNNCGW	1 cut(s)	961
PctI	GAATGC	1 cut(s)	957
PfeI	GAWTC	1 cut(s)	542
PfoI	TCCNGGA	1 cut(s)	661
PkrI	GCNGC	8 cut(s)	7, 520, 607, 619, 622, 631, 1077, 1126
PleI	GAGTC	1 cut(s)	460
PmaCI	CACGTG	1 cut(s)	344
PmlI	CACGTG	1 cut(s)	344
PpsI	GAGTC	1 cut(s)	460
Ppu21I	YACGTR	1 cut(s)	344
PshBI	ATTAAT	1 cut(s)	645
Psp6I	CCWGG	1 cut(s)	661
PspCI	CACGTG	1 cut(s)	344
PspGI	CCWGG	1 cut(s)	661
PspN4I	GGNNCC	1 cut(s)	1116
PspPI	GGNCC	2 cut(s)	659, 1024
PspXI	VCTCGAGB	1 cut(s)	1005
PsrI	GAACNNNNNNTAC	2 cut(s)	1139, 1171
PstI	CTGCAG	1 cut(s)	622
PstNI	CAGNNNCTG	1 cut(s)	626
PsuI	RGATCY	2 cut(s)	819, 1114
RsaI	GTAC	1 cut(s)	1016
RsaNI	GTAC	1 cut(s)	1015
RseI	CAYNNNNRTG	1 cut(s)	1163
SaqAI	TTAA	3 cut(s)	390, 645, 846
SatI	GCNGC	8 cut(s)	6, 519, 606, 618, 621, 630, 1076, 1125
Sau3AI	GATC	4 cut(s)	36, 754, 819, 1114
Sau96I	GGNCC	2 cut(s)	659, 1024
SchI	GAGTC	1 cut(s)	461
ScrFI	CCNGG	1 cut(s)	663
SfaNI	GCATC	2 cut(s)	829, 1035
SfcI	CTRYAG	1 cut(s)	618
Sfr274I	CTCGAG	1 cut(s)	1005
SinI	GGWCC	2 cut(s)	659, 1024
SlaI	CTCGAG	1 cut(s)	1005
SmiMI	CAYNNNNRTG	1 cut(s)	1163
SmlI	CTYRAG	2 cut(s)	389, 1005
SmoI	CTYRAG	2 cut(s)	389, 1005
SphI	GCATGC	1 cut(s)	1058
Sse9I	AATT	9 cut(s)	194, 241, 302, 367, 384, 576, 642, 732, 984
SsiI	CCGC	3 cut(s)	474, 842, 1073
SspMI	CTAG	6 cut(s)	92, 432, 438, 725, 801, 1080
StyD4I	CCNGG	1 cut(s)	661
StyI	CCWWGG	1 cut(s)	31
TaaI	ACNGT	8 cut(s)	21, 144, 468, 556, 775, 972, 1099, 1173
TaiI	ACGT	3 cut(s)	346, 881, 967
TaqI	TCGA	2 cut(s)	257, 1006
TasI	AATT	9 cut(s)	194, 241, 302, 367, 384, 576, 642, 732, 984
TatI	WGTACW	1 cut(s)	1014
TfiI	GAWTC	1 cut(s)	542
Tru1I	TTAA	3 cut(s)	390, 645, 846
Tru9I	TTAA	3 cut(s)	390, 645, 846
TscAI	CASTG	3 cut(s)	328, 789, 1176
TseFI	GTSAC	2 cut(s)	12, 587
TseI	GCWGC	8 cut(s)	5, 518, 605, 617, 620, 629, 1075, 1124
Tsp45I	GTSAC	2 cut(s)	12, 587
TspDTI	ATGAA	7 cut(s)	15, 234, 435, 435, 476, 866, 1011
TspGWI	ACGGA	1 cut(s)	780
TspRI	CASTG	3 cut(s)	328, 789, 1176
Vha464I	CTTAAG	1 cut(s)	389
VpaK11BI	GGWCC	2 cut(s)	659, 1024
VspI	ATTAAT	1 cut(s)	645
XapI	RAATTY	4 cut(s)	194, 241, 367, 384
XbaI	TCTAGA	1 cut(s)	91
XceI	RCATGY	1 cut(s)	1058
XcmI	CCANNNNNNNNNTGG	1 cut(s)	466
XhoI	CTCGAG	1 cut(s)	1005
XmiI	GTMKAC	1 cut(s)	696
XspI	CTAG	6 cut(s)	92, 432, 438, 725, 801, 1080
ZraI	GACGTC	1 cut(s)	879

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.