Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006616

Physical Location & Seq

Genomic Coordinates Reverse (-)

7109862 .. 7111929

Gene Structure 2068 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G20390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGACTTGGTCGGTTTTCAGATCCATAAATACTCCAACACTCGACCTCTCCACCGCACTTCGCTCCACTCGTACCCCATTGGTCGCTGCTGGTGTCGGCTGCGCAACATTCGCTGGTGTTTCTCTCTTCAGAATGTCTTCTAGATCTCCTCCTTTCGCTTCCCTCTCTGTCTCTGCTTCTTCTGTGAAGAAGGAAGTTGTGTCTACTGAGAAAGCACCAGCTGCTTTGGGACCTTACTCTCAGGCCATTAAAGCCAATAATCTGGTTTTTCTTTCAGGTGTTCTTGGACTTATACCTGAGACTGGAAAGTTTGTTTCGGAGAGCGTCGAAGATCAGACTGAGCAGGTACTCAAAAACATGGGGGAGATATTGAAAGCTAGTGGTGCTGATTATTCCTCGGTGGTGAAGACAACAATCATGTTGGCTGATTTGGCTGACTTCAAGACAGTGAACGAGATATATGCCAAATACTTCCCAGCTCCTTCTCCAGCACGATCGACGTATCAAGTTGCAGCTTTGCCTCTAAACGCCAAGATCGAGATTGAATGTATTGCAACACTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0006082 GO:0006520 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009081 GO:0009082 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0009987 GO:0010035 GO:0010038 GO:0016053 GO:0016787 GO:0019239 GO:0019752 GO:0031967 GO:0031975 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046686 GO:0050896 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribonuc_L-PSP

Protein Analysis

187

Amino Acids

19.82

Weight (kDa)

8.53

Isoelectric Point (pI)

53.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonuc_L-PSP	PF01042	69 - 186	3.8e-41	Endoribonuclease L-PSP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006616)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20390 AT3G20390
fragaria_vesca	FvH4_3g22680
malus_domestica	MD03G1200800.v1.1 MD11G1217800.v1.1 MD11G1218500.v1.1
prunus_persica	Prupe.4G213500_v2.0.a1 Prupe.4G213500_v2.0.a1
pyrus_communis	pycom03g15230 pycom11g19160 pycom11g19180 pycom11g19200
rosa_chinensis	RchiOBHm_Chr5g0039491
rosa_laevigata	RLG00000033922
rosa_multiflora	Rmu_sc0001204.1_g000001 Rmu_ssc0000400.1_g000035
rosa_roxburghii	Rroxscaffold_1G00040710 Rroxscaffold_1G00041660
rosa_rugosa	Rorug05G0179900 Rorug05G0180000
rosa_samantha	Rh5AG267100 Rh5BG271300 Rh5CG303900 Rh5DG278800
rosa_wichuraiana	Rw0G005700 Rw5G024960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	103
Acc36I	ACCTGC	1 cut(s)	334
AccI	GTMKAC	1 cut(s)	203
AciI	CCGC	1 cut(s)	54
AclWI	GGATC	1 cut(s)	15
AcuI	CTGAAG	1 cut(s)	112
AfaI	GTAC	2 cut(s)	73, 348
AfiI	CCNNNNNNNGG	1 cut(s)	302
AgsI	TTSAA	3 cut(s)	373, 442, 545
AluBI	AGCT	4 cut(s)	221, 377, 479, 515
AluI	AGCT	4 cut(s)	221, 377, 479, 515
Alw26I	GTCTC	2 cut(s)	175, 293
AlwI	GGATC	1 cut(s)	15
AoxI	GGCC	1 cut(s)	243
ApeKI	GCWGC	4 cut(s)	86, 99, 221, 512
Asp700I	GAANNNNTTC	1 cut(s)	136
AspLEI	GCGC	1 cut(s)	104
AspS9I	GGNCC	1 cut(s)	230
AsuHPI	GGTGA	1 cut(s)	415
AvaII	GGWCC	1 cut(s)	230
BbsI	GAAGAC	2 cut(s)	129, 413
BbvI	GCAGC	4 cut(s)	73, 86, 208, 524
BcgI	CGANNNNNNTGC	2 cut(s)	443, 477
BcoDI	GTCTC	2 cut(s)	175, 293
BfaI	CTAG	3 cut(s)	141, 378, 562
BfuAI	ACCTGC	1 cut(s)	334
BglII	AGATCT	1 cut(s)	143
BisI	GCNGC	4 cut(s)	87, 100, 222, 513
BlsI	GCNGC	4 cut(s)	88, 101, 223, 514
Bme18I	GGWCC	1 cut(s)	230
BmgT120I	GGNCC	1 cut(s)	230
BmiI	GGNNCC	1 cut(s)	231
BpiI	GAAGAC	2 cut(s)	129, 413
BpmI	CTGGAG	1 cut(s)	471
BsaJI	CCNNGG	1 cut(s)	396
Bsc4I	CCNNNNNNNGG	1 cut(s)	302
Bse1I	ACTGG	1 cut(s)	307
BseDI	CCNNGG	1 cut(s)	396
BseLI	CCNNNNNNNGG	1 cut(s)	302
BseMII	CTCAG	4 cut(s)	198, 254, 288, 330
BseNI	ACTGG	1 cut(s)	307
BseRI	GAGGAG	1 cut(s)	138
BseXI	GCAGC	4 cut(s)	73, 86, 208, 524
BseYI	CCCAGC	1 cut(s)	475
Bsh1285I	CGRYCG	1 cut(s)	497
BshFI	GGCC	1 cut(s)	245
BsiEI	CGRYCG	1 cut(s)	497
BslFI	GGGAC	1 cut(s)	243
BslI	CCNNNNNNNGG	1 cut(s)	302
BsmAI	GTCTC	2 cut(s)	175, 293
BsmFI	GGGAC	1 cut(s)	243
BsnI	GGCC	1 cut(s)	245
Bsp143I	GATC	5 cut(s)	20, 143, 331, 494, 534
BspACI	CCGC	1 cut(s)	54
BspANI	GGCC	1 cut(s)	245
BspCNI	CTCAG	4 cut(s)	199, 253, 289, 331
BspLI	GGNNCC	1 cut(s)	231
BspMI	ACCTGC	1 cut(s)	334
BspPI	GGATC	1 cut(s)	15
BsrI	ACTGG	1 cut(s)	307
BssECI	CCNNGG	1 cut(s)	396
BssMI	GATC	5 cut(s)	20, 143, 331, 494, 534
Bst4CI	ACNGT	1 cut(s)	448
Bst6I	CTCTTC	1 cut(s)	131
BstAPI	GCANNNNNTGC	1 cut(s)	221
BstDEI	CTNAG	4 cut(s)	207, 240, 297, 339
BstHHI	GCGC	1 cut(s)	104
BstKTI	GATC	5 cut(s)	23, 146, 334, 497, 537
BstMAI	GTCTC	2 cut(s)	175, 293
BstMBI	GATC	5 cut(s)	20, 143, 331, 494, 534
BstMCI	CGRYCG	1 cut(s)	497
BstMWI	GCNNNNNNNGC	5 cut(s)	110, 221, 251, 383, 431
BstV1I	GCAGC	4 cut(s)	73, 86, 208, 524
BstV2I	GAAGAC	2 cut(s)	129, 413
BstX2I	RGATCY	2 cut(s)	20, 143
BstXI	CCANNNNNNTGG	1 cut(s)	262
BstYI	RGATCY	2 cut(s)	20, 143
BsuRI	GGCC	1 cut(s)	245
BtsIMutI	CAGTG	1 cut(s)	453
BveI	ACCTGC	1 cut(s)	334
CfoI	GCGC	1 cut(s)	104
Cfr13I	GGNCC	1 cut(s)	230
CseI	GACGC	1 cut(s)	313
Csp6I	GTAC	2 cut(s)	72, 347
CviAII	CATG	2 cut(s)	358, 418
CviJI	RGCY	9 cut(s)	99, 221, 245, 254, 377, 425, 434, 479, 515
CviKI_1	RGCY	9 cut(s)	99, 221, 245, 254, 377, 425, 434, 479, 515
CviQI	GTAC	2 cut(s)	72, 347
DdeI	CTNAG	4 cut(s)	207, 240, 297, 339
DpnI	GATC	5 cut(s)	22, 145, 333, 496, 536
DpnII	GATC	5 cut(s)	20, 143, 331, 494, 534
Eam1104I	CTCTTC	1 cut(s)	131
EarI	CTCTTC	1 cut(s)	131
Eco47I	GGWCC	1 cut(s)	230
Eco57I	CTGAAG	1 cut(s)	112
EcoO109I	RGGNCCY	1 cut(s)	230
FaeI	CATG	2 cut(s)	361, 421
FaiI	YATR	6 cut(s)	26, 293, 359, 419, 460, 462
FaqI	GGGAC	1 cut(s)	243
FatI	CATG	2 cut(s)	357, 417
FblI	GTMKAC	1 cut(s)	203
Fnu4HI	GCNGC	4 cut(s)	87, 100, 222, 513
Fsp4HI	GCNGC	4 cut(s)	87, 100, 222, 513
FspBI	CTAG	3 cut(s)	141, 378, 562
FspI	TGCGCA	1 cut(s)	103
GlaI	GCGC	1 cut(s)	103
GluI	GCNGC	4 cut(s)	87, 100, 222, 513
GsaI	CCCAGC	1 cut(s)	479
GsuI	CTGGAG	1 cut(s)	471
HaeIII	GGCC	1 cut(s)	245
HgaI	GACGC	1 cut(s)	313
HhaI	GCGC	1 cut(s)	104
Hin1II	CATG	2 cut(s)	361, 421
Hin6I	GCGC	1 cut(s)	102
HinP1I	GCGC	1 cut(s)	102
HphI	GGTGA	1 cut(s)	415
Hpy166II	GTNNAC	2 cut(s)	204, 451
Hpy188I	TCNGA	4 cut(s)	20, 131, 319, 336
Hpy188III	TCNNGA	3 cut(s)	141, 442, 538
Hpy8I	GTNNAC	2 cut(s)	204, 451
Hpy99I	CGWCG	2 cut(s)	329, 502
HpyAV	CCTTC	2 cut(s)	184, 492
HpyCH4III	ACNGT	1 cut(s)	448
HpyCH4IV	ACGT	1 cut(s)	500
HpyCH4V	TGCA	2 cut(s)	512, 554
HpyF10VI	GCNNNNNNNGC	5 cut(s)	110, 221, 251, 383, 431
HpyF3I	CTNAG	4 cut(s)	207, 240, 297, 339
HpySE526I	ACGT	1 cut(s)	500
Hsp92II	CATG	2 cut(s)	361, 421
HspAI	GCGC	1 cut(s)	102
Kzo9I	GATC	5 cut(s)	20, 143, 331, 494, 534
LmnI	GCTCC	2 cut(s)	68, 484
Lsp1109I	GCAGC	4 cut(s)	73, 86, 208, 524
MaeI	CTAG	3 cut(s)	141, 378, 562
MaeII	ACGT	1 cut(s)	500
MalI	GATC	5 cut(s)	22, 145, 333, 496, 536
MboI	GATC	5 cut(s)	20, 143, 331, 494, 534
MboII	GAAGA	6 cut(s)	118, 129, 171, 199, 341, 418
MflI	RGATCY	2 cut(s)	20, 143
MmeI	TCCRAC	1 cut(s)	59
MnlI	CCTC	5 cut(s)	56, 159, 173, 406, 531
MroXI	GAANNNNTTC	1 cut(s)	136
MseI	TTAA	1 cut(s)	249
MspA1I	CMGCKG	1 cut(s)	221
MwoI	GCNNNNNNNGC	5 cut(s)	110, 221, 251, 383, 431
NdeII	GATC	5 cut(s)	20, 143, 331, 494, 534
NlaIII	CATG	2 cut(s)	361, 421
NlaIV	GGNNCC	1 cut(s)	231
NsbI	TGCGCA	1 cut(s)	103
PcsI	WCGNNNNNNNCGW	2 cut(s)	67, 534
PdmI	GAANNNNTTC	1 cut(s)	136
PflFI	GACNNNGTC	1 cut(s)	7
PkrI	GCNGC	4 cut(s)	88, 101, 223, 514
Ple19I	CGATCG	1 cut(s)	497
PpuMI	RGGWCCY	1 cut(s)	230
Psp5II	RGGWCCY	1 cut(s)	230
PspFI	CCCAGC	1 cut(s)	475
PspN4I	GGNNCC	1 cut(s)	231
PspPI	GGNCC	1 cut(s)	230
PspPPI	RGGWCCY	1 cut(s)	230
PsuI	RGATCY	2 cut(s)	20, 143
PsyI	GACNNNGTC	1 cut(s)	7
PvuI	CGATCG	1 cut(s)	497
PvuII	CAGCTG	1 cut(s)	221
RsaI	GTAC	2 cut(s)	73, 348
RsaNI	GTAC	2 cut(s)	72, 347
SaqAI	TTAA	1 cut(s)	249
SatI	GCNGC	4 cut(s)	87, 100, 222, 513
Sau3AI	GATC	5 cut(s)	20, 143, 331, 494, 534
Sau96I	GGNCC	1 cut(s)	230
SinI	GGWCC	1 cut(s)	230
SsiI	CCGC	1 cut(s)	54
SspMI	CTAG	3 cut(s)	141, 378, 562
TaaI	ACNGT	1 cut(s)	448
TaiI	ACGT	1 cut(s)	503
TaqI	TCGA	4 cut(s)	42, 327, 497, 537
Tru1I	TTAA	1 cut(s)	249
Tru9I	TTAA	1 cut(s)	249
TscAI	CASTG	1 cut(s)	453
TseI	GCWGC	4 cut(s)	86, 99, 221, 512
TspRI	CASTG	1 cut(s)	453
Tth111I	GACNNNGTC	1 cut(s)	7
VpaK11BI	GGWCC	1 cut(s)	230
XbaI	TCTAGA	1 cut(s)	140
XmiI	GTMKAC	1 cut(s)	203
XmnI	GAANNNNTTC	1 cut(s)	136
XspI	CTAG	3 cut(s)	141, 378, 562

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.