Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0006616

Physical Location & Seq

Genomic Coordinates Reverse (-)

33974700 .. 33976889

Gene Structure 2190 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG271300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGCGTGGTCTGCGGCGAGGAGCTTCCACATGCCGACGATCGACATGGGCGCACTGCGCACCGGGGCTCCCTTAGCCGTCGCCGGCGTCGGCTGTGCCTCGGTAGCCGGGTGGCGATCCTTGGTTTCATCGAAGCCCTCTTCCCGCTTCGCTTGCTTAGCAATTTCCACTGACGCTCGAATCAAGGAGGCTGTGAAAACAGATAAGGCTCCGGCTGCATTGGGACCCTATTCTCAGGCAATCAAAGCTAACAATGTTCTCTATGTGTCTGGTTGTCTTGGTCTGATTCCGGAGACCGGAAAGTTCATCTCTGATGATGTTGAAGGTCAGACGGAGCAGGTTCTCAAAAATATGGGAGAAATACTGAAAGCAAGTGGTGCCGATTATTCGTCTGTAGTTAAAACAACTATTTTGTTGGCCGACTTGAAAGACTTCAAGGCAGTCAATGAGATCTATGCCAAATACTTTCCATCACCAGCTCCAGCACGCACAACATTTCAGGTAGCAGCATTGCCATTGGATGCCAAGATTGAAATTGAGTGCATTGCAGCACTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0006082 GO:0006520 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009081 GO:0009082 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0009987 GO:0010035 GO:0010038 GO:0016053 GO:0016787 GO:0019239 GO:0019752 GO:0031967 GO:0031975 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046686 GO:0050896 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribonuc_L-PSP

Protein Analysis

185

Amino Acids

19.45

Weight (kDa)

8.32

Isoelectric Point (pI)

48.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonuc_L-PSP	PF01042	68 - 184	6.4e-42	Endoribonuclease L-PSP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006616)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20390 AT3G20390
fragaria_vesca	FvH4_3g22680
malus_domestica	MD03G1200800.v1.1 MD11G1217800.v1.1 MD11G1218500.v1.1
prunus_persica	Prupe.4G213500_v2.0.a1 Prupe.4G213500_v2.0.a1
pyrus_communis	pycom03g15230 pycom11g19160 pycom11g19180 pycom11g19200
rosa_chinensis	RchiOBHm_Chr5g0039491
rosa_laevigata	RLG00000033922
rosa_multiflora	Rmu_sc0001204.1_g000001 Rmu_ssc0000400.1_g000035
rosa_roxburghii	Rroxscaffold_1G00040710 Rroxscaffold_1G00041660
rosa_rugosa	Rorug05G0179900 Rorug05G0180000
rosa_samantha	Rh5AG267100 Rh5BG271300 Rh5CG303900 Rh5DG278800
rosa_wichuraiana	Rw0G005700 Rw5G024960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	59
Acc36I	ACCTGC	1 cut(s)	328
AccB1I	GGYRCC	1 cut(s)	377
AccIII	TCCGGA	1 cut(s)	289
AciI	CCGC	2 cut(s)	14, 145
AclWI	GGATC	1 cut(s)	111
AcoI	YGGCCR	1 cut(s)	417
AcyI	GRCGYC	1 cut(s)	87
AfiI	CCNNNNNNNGG	1 cut(s)	296
AgsI	TTSAA	4 cut(s)	323, 427, 436, 533
AluBI	AGCT	3 cut(s)	24, 248, 479
AluI	AGCT	3 cut(s)	24, 248, 479
Alw26I	GTCTC	1 cut(s)	287
AlwI	GGATC	1 cut(s)	111
Aor13HI	TCCGGA	1 cut(s)	289
AoxI	GGCC	1 cut(s)	417
ApeKI	GCWGC	3 cut(s)	215, 506, 548
Asp700I	GAANNNNTTC	1 cut(s)	431
AspLEI	GCGC	2 cut(s)	53, 60
AspS9I	GGNCC	1 cut(s)	224
AsuC2I	CCSGG	2 cut(s)	64, 109
AsuHPI	GGTGA	1 cut(s)	465
AvaII	GGWCC	1 cut(s)	224
BanI	GGYRCC	1 cut(s)	377
BanII	GRGCYC	1 cut(s)	70
BbvI	GCAGC	2 cut(s)	202, 518
BccI	CCATC	1 cut(s)	478
BceAI	ACGGC	1 cut(s)	62
BcnI	CCSGG	2 cut(s)	64, 109
BcoDI	GTCTC	1 cut(s)	287
BfmI	CTRYAG	2 cut(s)	393, 554
BfuAI	ACCTGC	1 cut(s)	328
BglII	AGATCT	1 cut(s)	450
BisI	GCNGC	4 cut(s)	15, 216, 507, 549
BlpI	GCTNAGC	1 cut(s)	157
BlsI	GCNGC	4 cut(s)	16, 217, 508, 550
Bme1390I	CCNGG	2 cut(s)	64, 109
Bme18I	GGWCC	1 cut(s)	224
BmgT120I	GGNCC	1 cut(s)	224
BmiI	GGNNCC	5 cut(s)	69, 210, 225, 226, 379
BmrFI	CCNGG	2 cut(s)	64, 109
BmsI	GCATC	1 cut(s)	511
BpmI	CTGGAG	1 cut(s)	465
Bpu10I	CCTNAGC	1 cut(s)	73
Bpu1102I	GCTNAGC	1 cut(s)	157
BpuMI	CCSGG	2 cut(s)	64, 109
BsaHI	GRCGYC	1 cut(s)	87
BsaI	GGTCTC	1 cut(s)	287
BsaJI	CCNNGG	3 cut(s)	63, 99, 120
BsaWI	WCCGGW	2 cut(s)	289, 296
BsaXI	ACNNNNNCTCC	2 cut(s)	52, 82
Bsc4I	CCNNNNNNNGG	1 cut(s)	296
Bse118I	RCCGGY	1 cut(s)	83
Bse3DI	GCAATG	2 cut(s)	509, 543
BseAI	TCCGGA	1 cut(s)	289
BseDI	CCNNGG	3 cut(s)	63, 99, 120
BseGI	GGATG	1 cut(s)	526
BseLI	CCNNNNNNNGG	1 cut(s)	296
BseMI	GCAATG	2 cut(s)	509, 543
BseMII	CTCAG	1 cut(s)	248
BseRI	GAGGAG	1 cut(s)	34
BseXI	GCAGC	2 cut(s)	202, 518
Bsh1285I	CGRYCG	1 cut(s)	42
BshFI	GGCC	1 cut(s)	419
BshNI	GGYRCC	1 cut(s)	377
BsiEI	CGRYCG	1 cut(s)	42
BsiSI	CCGG	6 cut(s)	63, 84, 108, 212, 290, 297
BslFI	GGGAC	1 cut(s)	237
BslI	CCNNNNNNNGG	1 cut(s)	296
BsmAI	GTCTC	1 cut(s)	287
BsmFI	GGGAC	1 cut(s)	237
BsnI	GGCC	1 cut(s)	419
Bso31I	GGTCTC	1 cut(s)	287
Bsp1286I	GDGCHC	1 cut(s)	70
Bsp13I	TCCGGA	1 cut(s)	289
Bsp143I	GATC	3 cut(s)	39, 116, 450
Bsp1720I	GCTNAGC	1 cut(s)	157
BspACI	CCGC	2 cut(s)	14, 145
BspANI	GGCC	1 cut(s)	419
BspCNI	CTCAG	1 cut(s)	247
BspEI	TCCGGA	1 cut(s)	289
BspLI	GGNNCC	5 cut(s)	69, 210, 225, 226, 379
BspMI	ACCTGC	1 cut(s)	328
BspPI	GGATC	1 cut(s)	111
BspT107I	GGYRCC	1 cut(s)	377
BspTNI	GGTCTC	1 cut(s)	287
BsrDI	GCAATG	2 cut(s)	509, 543
BsrFI	RCCGGY	1 cut(s)	83
BssAI	RCCGGY	1 cut(s)	83
BssECI	CCNNGG	3 cut(s)	63, 99, 120
BssMI	GATC	3 cut(s)	39, 116, 450
BssNI	GRCGYC	1 cut(s)	87
BssT1I	CCWWGG	1 cut(s)	120
Bst4CI	ACNGT	1 cut(s)	555
Bst6I	CTCTTC	1 cut(s)	145
BstACI	GRCGYC	1 cut(s)	87
BstAPI	GCANNNNNTGC	1 cut(s)	377
BstC8I	GCNNGC	3 cut(s)	85, 154, 487
BstDEI	CTNAG	3 cut(s)	73, 157, 234
BstF5I	GGATG	1 cut(s)	526
BstHHI	GCGC	2 cut(s)	53, 60
BstKTI	GATC	3 cut(s)	42, 119, 453
BstMAI	GTCTC	1 cut(s)	287
BstMBI	GATC	3 cut(s)	39, 116, 450
BstMCI	CGRYCG	1 cut(s)	42
BstMWI	GCNNNNNNNGC	9 cut(s)	11, 57, 74, 104, 153, 158, 215, 245, 377
BstNSI	RCATGY	1 cut(s)	34
BstSCI	CCNGG	2 cut(s)	62, 107
BstSFI	CTRYAG	2 cut(s)	393, 554
BstV1I	GCAGC	2 cut(s)	202, 518
BstX2I	RGATCY	1 cut(s)	450
BstYI	RGATCY	1 cut(s)	450
BsuRI	GGCC	1 cut(s)	419
BtsCI	GGATG	1 cut(s)	526
BtsI	GCAGTG	1 cut(s)	53
BtsIMutI	CAGTG	3 cut(s)	53, 168, 551
BveI	ACCTGC	1 cut(s)	328
Cac8I	GCNNGC	3 cut(s)	85, 154, 487
CfoI	GCGC	2 cut(s)	53, 60
Cfr10I	RCCGGY	1 cut(s)	83
Cfr13I	GGNCC	1 cut(s)	224
CseI	GACGC	2 cut(s)	76, 182
CviAII	CATG	2 cut(s)	31, 46
DdeI	CTNAG	3 cut(s)	73, 157, 234
DpnI	GATC	3 cut(s)	41, 118, 452
DpnII	GATC	3 cut(s)	39, 116, 450
EaeI	YGGCCR	1 cut(s)	417
Eam1104I	CTCTTC	1 cut(s)	145
EarI	CTCTTC	1 cut(s)	145
Eco130I	CCWWGG	1 cut(s)	120
Eco24I	GRGCYC	1 cut(s)	70
Eco31I	GGTCTC	1 cut(s)	287
Eco47I	GGWCC	1 cut(s)	224
EcoO109I	RGGNCCY	1 cut(s)	224
EcoT14I	CCWWGG	1 cut(s)	120
EcoT38I	GRGCYC	1 cut(s)	70
ErhI	CCWWGG	1 cut(s)	120
FaeI	CATG	2 cut(s)	34, 49
FaiI	YATR	5 cut(s)	32, 47, 264, 353, 456
FaqI	GGGAC	1 cut(s)	237
FatI	CATG	2 cut(s)	30, 45
FauI	CCCGC	1 cut(s)	152
Fnu4HI	GCNGC	4 cut(s)	15, 216, 507, 549
FokI	GGATG	1 cut(s)	533
FriOI	GRGCYC	1 cut(s)	70
Fsp4HI	GCNGC	4 cut(s)	15, 216, 507, 549
FspI	TGCGCA	1 cut(s)	59
GlaI	GCGC	2 cut(s)	52, 59
GluI	GCNGC	4 cut(s)	15, 216, 507, 549
GsuI	CTGGAG	1 cut(s)	465
HaeIII	GGCC	1 cut(s)	419
HapII	CCGG	6 cut(s)	63, 84, 108, 212, 290, 297
HgaI	GACGC	2 cut(s)	76, 182
HhaI	GCGC	2 cut(s)	53, 60
Hin1I	GRCGYC	1 cut(s)	87
Hin1II	CATG	2 cut(s)	34, 49
Hin6I	GCGC	2 cut(s)	51, 58
HinP1I	GCGC	2 cut(s)	51, 58
HinfI	GANTC	2 cut(s)	180, 286
HpaII	CCGG	6 cut(s)	63, 84, 108, 212, 290, 297
HphI	GGTGA	1 cut(s)	465
Hpy188I	TCNGA	3 cut(s)	285, 313, 330
Hpy188III	TCNNGA	1 cut(s)	290
Hpy99I	CGWCG	3 cut(s)	40, 83, 92
HpyAV	CCTTC	1 cut(s)	317
HpyCH4III	ACNGT	1 cut(s)	555
HpyCH4V	TGCA	3 cut(s)	218, 543, 548
HpyF10VI	GCNNNNNNNGC	9 cut(s)	11, 57, 74, 104, 153, 158, 215, 245, 377
HpyF3I	CTNAG	3 cut(s)	73, 157, 234
Hsp92I	GRCGYC	1 cut(s)	87
Hsp92II	CATG	2 cut(s)	34, 49
HspAI	GCGC	2 cut(s)	51, 58
KflI	GGGWCCC	1 cut(s)	224
Kpn2I	TCCGGA	1 cut(s)	289
KroI	GCCGGC	1 cut(s)	83
KroNI	GCCGGC	1 cut(s)	85
Kzo9I	GATC	3 cut(s)	39, 116, 450
LmnI	GCTCC	5 cut(s)	21, 73, 214, 334, 484
Lsp1109I	GCAGC	2 cut(s)	202, 518
LweI	GCATC	1 cut(s)	511
MalI	GATC	3 cut(s)	41, 118, 452
MboI	GATC	3 cut(s)	39, 116, 450
MboII	GAAGA	1 cut(s)	132
MflI	RGATCY	1 cut(s)	450
MhlI	GDGCHC	1 cut(s)	70
MluCI	AATT	2 cut(s)	162, 534
MnlI	CCTC	4 cut(s)	12, 109, 148, 181
MreI	CGCCGGCG	1 cut(s)	83
MroI	TCCGGA	1 cut(s)	289
MroNI	GCCGGC	1 cut(s)	83
MroXI	GAANNNNTTC	1 cut(s)	431
MseI	TTAA	1 cut(s)	399
MspI	CCGG	6 cut(s)	63, 84, 108, 212, 290, 297
MspR9I	CCNGG	2 cut(s)	64, 109
MwoI	GCNNNNNNNGC	9 cut(s)	11, 57, 74, 104, 153, 158, 215, 245, 377
NaeI	GCCGGC	1 cut(s)	85
NciI	CCSGG	2 cut(s)	64, 109
NdeII	GATC	3 cut(s)	39, 116, 450
NgoMIV	GCCGGC	1 cut(s)	83
NlaIII	CATG	2 cut(s)	34, 49
NlaIV	GGNNCC	5 cut(s)	69, 210, 225, 226, 379
NsbI	TGCGCA	1 cut(s)	59
NspI	RCATGY	1 cut(s)	34
PdiI	GCCGGC	1 cut(s)	85
PdmI	GAANNNNTTC	1 cut(s)	431
PfeI	GAWTC	2 cut(s)	180, 286
PkrI	GCNGC	4 cut(s)	16, 217, 508, 550
Ple19I	CGATCG	1 cut(s)	42
PpuMI	RGGWCCY	1 cut(s)	224
Psp5II	RGGWCCY	1 cut(s)	224
PspN4I	GGNNCC	5 cut(s)	69, 210, 225, 226, 379
PspPI	GGNCC	1 cut(s)	224
PspPPI	RGGWCCY	1 cut(s)	224
PsuI	RGATCY	1 cut(s)	450
PvuI	CGATCG	1 cut(s)	42
SaqAI	TTAA	1 cut(s)	399
SatI	GCNGC	4 cut(s)	15, 216, 507, 549
Sau3AI	GATC	3 cut(s)	39, 116, 450
Sau96I	GGNCC	1 cut(s)	224
ScrFI	CCNGG	2 cut(s)	64, 109
SduI	GDGCHC	1 cut(s)	70
SetI	ASST	6 cut(s)	26, 250, 328, 342, 481, 504
SfaNI	GCATC	1 cut(s)	511
SfcI	CTRYAG	2 cut(s)	393, 554
SgrAI	CRCCGGYG	1 cut(s)	83
SinI	GGWCC	1 cut(s)	224
Sse9I	AATT	2 cut(s)	162, 534
SsiI	CCGC	2 cut(s)	14, 145
StyD4I	CCNGG	2 cut(s)	62, 107
StyI	CCWWGG	1 cut(s)	120
TaaI	ACNGT	1 cut(s)	555
TaqI	TCGA	3 cut(s)	42, 131, 178
TasI	AATT	2 cut(s)	162, 534
TauI	GCSGC	1 cut(s)	17
TfiI	GAWTC	2 cut(s)	180, 286
Tru1I	TTAA	1 cut(s)	399
Tru9I	TTAA	1 cut(s)	399
TscAI	CASTG	3 cut(s)	60, 175, 558
TseI	GCWGC	3 cut(s)	215, 506, 548
TspDTI	ATGAA	2 cut(s)	117, 295
TspGWI	ACGGA	1 cut(s)	347
TspRI	CASTG	3 cut(s)	60, 175, 558
VpaK11BI	GGWCC	1 cut(s)	224
XceI	RCATGY	1 cut(s)	34
XmnI	GAANNNNTTC	1 cut(s)	431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.