Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006616

Physical Location & Seq

Genomic Coordinates Forward (+)

17222848 .. 17223615

Gene Structure 768 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0179900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGCTAGCAGTAGCCGTCTGGCCTTAGTTCTTGTCTTTACTATCTCATGCTTCCACATTTGTCATGCTGCAAGAAGAAATACACTGAAACCAGGTGATACGCTCAATTCATCGAGCTCCTTAGTCTCCAAAACAGGGAAGTTCACTTTGGGGTTCTTTGAAAATGGAAACTCGAAAACCAGCTATCTAGCAATCTATTATATCAATGCTGGAAATTCTATAAATTATGCATGGATTGCCAACCGGAAAACACCCATTTTATACCCAACAGGAGTTCTTACCTTGGACAAGAACAACACATTGAAAGTTACCCAAAATGGTGGTGATCCTCTGCTTCTTTACTCTGCTTCGGAAAGTAGTACCAATAATACCAGTGTTGTTGCTACCCTTTTGGATTCTGGCAATTTCATCCTACAACAAGTGAACTCCGACGGATCAACAAAGAGGGTGTTGTGGCAAAGTTTTGATCATCCTGGAAACACCCTTTTTCCAGGTATGAAGTTAGATGTTGACCATAAAAATGGTCACATTTGGTCACTTGCATCATGGTTTCTGTACAACACAGAACCGGGGGCTTTCACTCTCGATTGGGACCCCAGTGAACACCAGTTGAAGATCAGGCAGCGCGGGAAGGTTTGTTGGAGTAGCGGTGTCTTTACCAATGGAAGATACAAGTTTGTACTACCTGATGATGATTCCAAGAAGATGAGGTACAACTTTACAATTGTTTCAAATGAGAATGAAGATTACTTATACTGCAGTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0006082 GO:0006520 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009081 GO:0009082 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0009987 GO:0010035 GO:0010038 GO:0016053 GO:0016787 GO:0019239 GO:0019752 GO:0031967 GO:0031975 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046686 GO:0050896 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribonuc_L-PSP

Protein Analysis

255

Amino Acids

28.55

Weight (kDa)

8.95

Isoelectric Point (pI)

31.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	77 - 183	4e-26	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006616)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20390 AT3G20390
fragaria_vesca	FvH4_3g22680
malus_domestica	MD03G1200800.v1.1 MD11G1217800.v1.1 MD11G1218500.v1.1
prunus_persica	Prupe.4G213500_v2.0.a1 Prupe.4G213500_v2.0.a1
pyrus_communis	pycom03g15230 pycom11g19160 pycom11g19180 pycom11g19200
rosa_chinensis	RchiOBHm_Chr5g0039491
rosa_laevigata	RLG00000033922
rosa_multiflora	Rmu_sc0001204.1_g000001 Rmu_ssc0000400.1_g000035
rosa_roxburghii	Rroxscaffold_1G00040710 Rroxscaffold_1G00041660
rosa_rugosa	Rorug05G0179900 Rorug05G0180000
rosa_samantha	Rh5AG267100 Rh5BG271300 Rh5CG303900 Rh5DG278800
rosa_wichuraiana	Rw0G005700 Rw5G024960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	627
AciI	CCGC	2 cut(s)	627, 648
AclWI	GGATC	2 cut(s)	320, 442
AcsI	RAATTY	1 cut(s)	214
AfaI	GTAC	4 cut(s)	361, 557, 681, 713
AfiI	CCNNNNNNNGG	1 cut(s)	135
AgsI	TTSAA	4 cut(s)	161, 304, 613, 732
AjnI	CCWGG	3 cut(s)	91, 472, 490
AjuI	GAANNNNNNNTTGG	2 cut(s)	131, 163
AluBI	AGCT	2 cut(s)	117, 183
AluI	AGCT	2 cut(s)	117, 183
Alw21I	GWGCWC	1 cut(s)	119
Alw26I	GTCTC	1 cut(s)	130
AlwI	GGATC	2 cut(s)	320, 442
AoxI	GGCC	1 cut(s)	21
ApeKI	GCWGC	2 cut(s)	68, 622
ApoI	RAATTY	1 cut(s)	214
AspLEI	GCGC	1 cut(s)	627
AspS9I	GGNCC	1 cut(s)	592
AsuC2I	CCSGG	1 cut(s)	570
AsuHPI	GGTGA	2 cut(s)	107, 335
AsuNHI	GCTAGC	1 cut(s)	5
AvaII	GGWCC	1 cut(s)	592
BanII	GRGCYC	1 cut(s)	119
BarI	GAAGNNNNNNTAC	2 cut(s)	695, 727
Bbv12I	GWGCWC	1 cut(s)	119
BbvI	GCAGC	2 cut(s)	55, 634
BciT130I	CCWGG	3 cut(s)	93, 474, 492
BclI	TGATCA	1 cut(s)	466
BcnI	CCSGG	1 cut(s)	570
BcoDI	GTCTC	1 cut(s)	130
BfaI	CTAG	2 cut(s)	6, 188
BfmI	CTRYAG	1 cut(s)	757
BisI	GCNGC	2 cut(s)	69, 623
BlsI	GCNGC	2 cut(s)	70, 624
Bme1390I	CCNGG	4 cut(s)	93, 474, 492, 570
Bme18I	GGWCC	1 cut(s)	592
BmgT120I	GGNCC	1 cut(s)	592
BmiI	GGNNCC	2 cut(s)	593, 594
BmrFI	CCNGG	4 cut(s)	93, 474, 492, 570
BmrI	ACTGGG	1 cut(s)	591
BmsI	GCATC	1 cut(s)	551
BmtI	GCTAGC	1 cut(s)	9
BmuI	ACTGGG	1 cut(s)	591
BpuMI	CCSGG	1 cut(s)	570
BsaJI	CCNNGG	2 cut(s)	282, 569
BsaWI	WCCGGW	1 cut(s)	243
BsaXI	ACNNNNNCTCC	2 cut(s)	634, 664
Bsc4I	CCNNNNNNNGG	1 cut(s)	135
Bse1I	ACTGG	3 cut(s)	372, 597, 607
BseBI	CCWGG	3 cut(s)	93, 474, 492
BseDI	CCNNGG	2 cut(s)	282, 569
BseGI	GGATG	2 cut(s)	408, 469
BseLI	CCNNNNNNNGG	1 cut(s)	135
BseNI	ACTGG	3 cut(s)	372, 597, 607
BseXI	GCAGC	2 cut(s)	55, 634
Bsh1236I	CGCG	1 cut(s)	627
BshFI	GGCC	1 cut(s)	23
BsiHKAI	GWGCWC	1 cut(s)	119
BsiSI	CCGG	2 cut(s)	244, 569
BslFI	GGGAC	1 cut(s)	605
BslI	CCNNNNNNNGG	1 cut(s)	135
BsmAI	GTCTC	1 cut(s)	130
BsmFI	GGGAC	1 cut(s)	605
BsnI	GGCC	1 cut(s)	23
Bsp1286I	GDGCHC	1 cut(s)	119
Bsp1407I	TGTACA	1 cut(s)	555
Bsp143I	GATC	4 cut(s)	325, 434, 466, 615
BspACI	CCGC	2 cut(s)	627, 648
BspANI	GGCC	1 cut(s)	23
BspFNI	CGCG	1 cut(s)	627
BspLI	GGNNCC	2 cut(s)	593, 594
BspMAI	CTGCAG	1 cut(s)	761
BspOI	GCTAGC	1 cut(s)	9
BspPI	GGATC	2 cut(s)	320, 442
BsrGI	TGTACA	1 cut(s)	555
BsrI	ACTGG	3 cut(s)	372, 597, 607
BssECI	CCNNGG	2 cut(s)	282, 569
BssMI	GATC	4 cut(s)	325, 434, 466, 615
BssT1I	CCWWGG	1 cut(s)	282
Bst2UI	CCWGG	3 cut(s)	93, 474, 492
BstAPI	GCANNNNNTGC	1 cut(s)	236
BstAUI	TGTACA	1 cut(s)	555
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	2 cut(s)	25, 121
BstF5I	GGATG	2 cut(s)	408, 469
BstFNI	CGCG	1 cut(s)	627
BstHHI	GCGC	1 cut(s)	627
BstKTI	GATC	4 cut(s)	328, 437, 469, 618
BstMAI	GTCTC	1 cut(s)	130
BstMBI	GATC	4 cut(s)	325, 434, 466, 615
BstMWI	GCNNNNNNNGC	1 cut(s)	236
BstNI	CCWGG	3 cut(s)	93, 474, 492
BstSCI	CCNGG	4 cut(s)	91, 472, 490, 568
BstSFI	CTRYAG	1 cut(s)	757
BstUI	CGCG	1 cut(s)	627
BstV1I	GCAGC	2 cut(s)	55, 634
BstXI	CCANNNNNNTGG	2 cut(s)	320, 521
BsuRI	GGCC	1 cut(s)	23
BtsCI	GGATG	2 cut(s)	408, 469
BtsIMutI	CAGTG	3 cut(s)	83, 379, 604
Cac8I	GCNNGC	1 cut(s)	7
CfoI	GCGC	1 cut(s)	627
Cfr13I	GGNCC	1 cut(s)	592
CsiI	ACCWGGT	1 cut(s)	91
Csp6I	GTAC	4 cut(s)	360, 556, 680, 712
CviAII	CATG	4 cut(s)	48, 65, 231, 546
CviJI	RGCY	6 cut(s)	5, 15, 23, 117, 183, 575
CviKI_1	RGCY	6 cut(s)	5, 15, 23, 117, 183, 575
CviQI	GTAC	4 cut(s)	360, 556, 680, 712
DdeI	CTNAG	2 cut(s)	25, 121
DpnI	GATC	4 cut(s)	327, 436, 468, 617
DpnII	GATC	4 cut(s)	325, 434, 466, 615
Ecl136II	GAGCTC	1 cut(s)	117
Eco130I	CCWWGG	1 cut(s)	282
Eco24I	GRGCYC	1 cut(s)	119
Eco47I	GGWCC	1 cut(s)	592
Eco53kI	GAGCTC	1 cut(s)	117
EcoICRI	GAGCTC	1 cut(s)	117
EcoO109I	RGGNCCY	1 cut(s)	592
EcoRII	CCWGG	3 cut(s)	91, 472, 490
EcoT14I	CCWWGG	1 cut(s)	282
EcoT22I	ATGCAT	1 cut(s)	232
EcoT38I	GRGCYC	1 cut(s)	119
ErhI	CCWWGG	1 cut(s)	282
FaeI	CATG	4 cut(s)	51, 68, 234, 549
FaqI	GGGAC	1 cut(s)	605
FatI	CATG	4 cut(s)	47, 64, 230, 545
FauI	CCCGC	1 cut(s)	620
FbaI	TGATCA	1 cut(s)	466
Fnu4HI	GCNGC	2 cut(s)	69, 623
FokI	GGATG	2 cut(s)	395, 456
FriOI	GRGCYC	1 cut(s)	119
Fsp4HI	GCNGC	2 cut(s)	69, 623
FspBI	CTAG	2 cut(s)	6, 188
GlaI	GCGC	1 cut(s)	626
GluI	GCNGC	2 cut(s)	69, 623
HaeIII	GGCC	1 cut(s)	23
HapII	CCGG	2 cut(s)	244, 569
HhaI	GCGC	1 cut(s)	627
Hin1II	CATG	4 cut(s)	51, 68, 234, 549
Hin6I	GCGC	1 cut(s)	625
HinP1I	GCGC	1 cut(s)	625
HincII	GTYRAC	1 cut(s)	511
HindII	GTYRAC	1 cut(s)	511
HinfI	GANTC	2 cut(s)	395, 695
HpaII	CCGG	2 cut(s)	244, 569
HphI	GGTGA	2 cut(s)	107, 335
Hpy166II	GTNNAC	4 cut(s)	144, 424, 511, 602
Hpy188I	TCNGA	2 cut(s)	352, 430
Hpy188III	TCNNGA	1 cut(s)	584
Hpy8I	GTNNAC	4 cut(s)	144, 424, 511, 602
Hpy99I	CGWCG	1 cut(s)	434
HpyAV	CCTTC	1 cut(s)	625
HpyCH4V	TGCA	4 cut(s)	71, 230, 542, 759
HpyF10VI	GCNNNNNNNGC	1 cut(s)	236
HpyF3I	CTNAG	2 cut(s)	25, 121
Hsp92II	CATG	4 cut(s)	51, 68, 234, 549
HspAI	GCGC	1 cut(s)	625
KflI	GGGWCCC	1 cut(s)	592
Ksp22I	TGATCA	1 cut(s)	466
Kzo9I	GATC	4 cut(s)	325, 434, 466, 615
LmnI	GCTCC	1 cut(s)	122
Lsp1109I	GCAGC	2 cut(s)	55, 634
LweI	GCATC	1 cut(s)	551
MabI	ACCWGGT	1 cut(s)	91
MaeI	CTAG	2 cut(s)	6, 188
MaeIII	GTNAC	3 cut(s)	307, 524, 534
MalI	GATC	4 cut(s)	327, 436, 468, 617
MboI	GATC	4 cut(s)	325, 434, 466, 615
MboII	GAAGA	5 cut(s)	87, 625, 678, 715, 755
MfeI	CAATTG	1 cut(s)	723
MhlI	GDGCHC	1 cut(s)	119
MluCI	AATT	5 cut(s)	106, 214, 223, 403, 723
MmeI	TCCRAC	2 cut(s)	453, 620
MnlI	CCTC	3 cut(s)	339, 438, 702
Mph1103I	ATGCAT	1 cut(s)	232
MslI	CAYNNNNRTG	1 cut(s)	519
MspI	CCGG	2 cut(s)	244, 569
MspR9I	CCNGG	4 cut(s)	93, 474, 492, 570
MunI	CAATTG	1 cut(s)	723
MvaI	CCWGG	3 cut(s)	93, 474, 492
MvnI	CGCG	1 cut(s)	627
MwoI	GCNNNNNNNGC	1 cut(s)	236
NciI	CCSGG	1 cut(s)	570
NdeII	GATC	4 cut(s)	325, 434, 466, 615
NheI	GCTAGC	1 cut(s)	5
NlaIII	CATG	4 cut(s)	51, 68, 234, 549
NlaIV	GGNNCC	2 cut(s)	593, 594
NmuCI	GTSAC	2 cut(s)	524, 534
NsiI	ATGCAT	1 cut(s)	232
PfeI	GAWTC	2 cut(s)	395, 695
PfoI	TCCNGGA	1 cut(s)	472
PkrI	GCNGC	2 cut(s)	70, 624
PpuMI	RGGWCCY	1 cut(s)	592
Psp124BI	GAGCTC	1 cut(s)	119
Psp5II	RGGWCCY	1 cut(s)	592
Psp6I	CCWGG	3 cut(s)	91, 472, 490
PspGI	CCWGG	3 cut(s)	91, 472, 490
PspN4I	GGNNCC	2 cut(s)	593, 594
PspPI	GGNCC	1 cut(s)	592
PspPPI	RGGWCCY	1 cut(s)	592
PstI	CTGCAG	1 cut(s)	761
RsaI	GTAC	4 cut(s)	361, 557, 681, 713
RsaNI	GTAC	4 cut(s)	360, 556, 680, 712
RseI	CAYNNNNRTG	1 cut(s)	519
SacI	GAGCTC	1 cut(s)	119
SatI	GCNGC	2 cut(s)	69, 623
Sau3AI	GATC	4 cut(s)	325, 434, 466, 615
Sau96I	GGNCC	1 cut(s)	592
ScrFI	CCNGG	4 cut(s)	93, 474, 492, 570
SduI	GDGCHC	1 cut(s)	119
SetI	ASST	8 cut(s)	97, 119, 185, 284, 496, 636, 688, 713
SexAI	ACCWGGT	1 cut(s)	91
SfaNI	GCATC	1 cut(s)	551
SfcI	CTRYAG	1 cut(s)	757
SinI	GGWCC	1 cut(s)	592
SmiMI	CAYNNNNRTG	1 cut(s)	519
Sse9I	AATT	5 cut(s)	106, 214, 223, 403, 723
SsiI	CCGC	2 cut(s)	627, 648
SspMI	CTAG	2 cut(s)	6, 188
SstI	GAGCTC	1 cut(s)	119
StyD4I	CCNGG	4 cut(s)	91, 472, 490, 568
StyI	CCWWGG	1 cut(s)	282
TaqI	TCGA	3 cut(s)	113, 173, 585
TasI	AATT	5 cut(s)	106, 214, 223, 403, 723
TatI	WGTACW	2 cut(s)	555, 679
TfiI	GAWTC	2 cut(s)	395, 695
TscAI	CASTG	3 cut(s)	90, 379, 604
TseFI	GTSAC	2 cut(s)	524, 534
TseI	GCWGC	2 cut(s)	68, 622
Tsp45I	GTSAC	2 cut(s)	524, 534
TspDTI	ATGAA	4 cut(s)	99, 397, 512, 756
TspGWI	ACGGA	1 cut(s)	447
TspRI	CASTG	3 cut(s)	90, 379, 604
VpaK11BI	GGWCC	1 cut(s)	592
XapI	RAATTY	1 cut(s)	214
XspI	CTAG	2 cut(s)	6, 188
Zsp2I	ATGCAT	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.