Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0006616

Physical Location & Seq

Genomic Coordinates Reverse (-)

13329350 .. 13331773

Gene Structure 2424 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G213500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGCTTGGTGTGCGGCGAGGAGCTTACACTTGCCGACAATCGACTTGGGCGCGTTGCGCACCCGGGCTCCGTTAGCCGTGGGCGTGGGCTTTGCTTCGGCGGCTGGCTCCACTCTTTGGCGATCCTCGGCTTCATCGAAGCCCTCTTCGCGCTTCGCTTGCTTAGCCATTTCCACTGACGCTCGAATCAAGGAAGCTGTTCACACAGACAAGGCCCCGGCTGCATTGGGACCCTATTCTCAGGCCATCAAAGCCAACAACTTTGTCCATGTGTCTGGGGTTCTTGGTCTGATTCCCGAGACTGGGAAGTTCATATCTGAGAATGTTGAAGATCAGACAGAGCAGGTTCTAAAAAATATGGGGGAAATACTGAAAGCAAGTGGCGCCAACTATTCTTCTGTGGTTAAAACGACAATTCTGTTGGCTGACTTGAAAGACTTCAAGAAAGTCAATGAGATCTATGCTAAATATTTTCCGTCACCAGCCCCAGCTCGTTCAACATTTCAGGTAGCGGCATTGCCATTGGATGCCAAGATTGAAATTGAGTGCATTGCAGCACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0006082 GO:0006520 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009081 GO:0009082 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0009987 GO:0010035 GO:0010038 GO:0016053 GO:0016787 GO:0019239 GO:0019752 GO:0031967 GO:0031975 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046686 GO:0050896 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribonuc_L-PSP

Protein Analysis

188

Amino Acids

19.82

Weight (kDa)

8.99

Isoelectric Point (pI)

51.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006616)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20390 AT3G20390
fragaria_vesca	FvH4_3g22680
malus_domestica	MD03G1200800.v1.1 MD11G1217800.v1.1 MD11G1218500.v1.1
prunus_persica	Prupe.4G213500_v2.0.a1 Prupe.4G213500_v2.0.a1
pyrus_communis	pycom03g15230 pycom11g19160 pycom11g19180 pycom11g19200
rosa_chinensis	RchiOBHm_Chr5g0039491
rosa_laevigata	RLG00000033922
rosa_multiflora	Rmu_sc0001204.1_g000001 Rmu_ssc0000400.1_g000035
rosa_roxburghii	Rroxscaffold_1G00040710 Rroxscaffold_1G00041660
rosa_rugosa	Rorug05G0179900 Rorug05G0180000
rosa_samantha	Rh5AG267100 Rh5BG271300 Rh5CG303900 Rh5DG278800
rosa_wichuraiana	Rw0G005700 Rw5G024960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	59
Acc36I	ACCTGC	1 cut(s)	334
AccB1I	GGYRCC	1 cut(s)	383
AccB7I	CCANNNNNTGG	1 cut(s)	117
AccII	CGCG	2 cut(s)	53, 151
AciI	CCGC	3 cut(s)	14, 101, 512
AclWI	GGATC	1 cut(s)	117
AcyI	GRCGYC	1 cut(s)	384
AfiI	CCNNNNNNNGG	3 cut(s)	117, 302, 303
AgsI	TTSAA	5 cut(s)	329, 433, 442, 498, 539
AluBI	AGCT	3 cut(s)	24, 197, 491
AluI	AGCT	3 cut(s)	24, 197, 491
Alw26I	GTCTC	1 cut(s)	293
AlwI	GGATC	1 cut(s)	117
Ama87I	CYCGRG	2 cut(s)	63, 296
AoxI	GGCC	2 cut(s)	213, 243
ApeKI	GCWGC	2 cut(s)	221, 554
Asp700I	GAANNNNTTC	2 cut(s)	198, 437
AspLEI	GCGC	4 cut(s)	53, 60, 153, 386
AspS9I	GGNCC	2 cut(s)	214, 230
AsuC2I	CCSGG	3 cut(s)	64, 65, 218
AsuHPI	GGTGA	1 cut(s)	471
AvaI	CYCGRG	2 cut(s)	63, 296
AvaII	GGWCC	1 cut(s)	230
BanI	GGYRCC	1 cut(s)	383
BanII	GRGCYC	1 cut(s)	70
BbvI	GCAGC	1 cut(s)	208
BccI	CCATC	1 cut(s)	254
BceAI	ACGGC	1 cut(s)	62
BcnI	CCSGG	3 cut(s)	64, 65, 218
BcoDI	GTCTC	1 cut(s)	293
BfoI	RGCGCY	1 cut(s)	387
BfuAI	ACCTGC	1 cut(s)	334
BglII	AGATCT	1 cut(s)	456
BisI	GCNGC	5 cut(s)	15, 102, 222, 513, 555
BlpI	GCTNAGC	1 cut(s)	163
BlsI	GCNGC	5 cut(s)	16, 103, 223, 514, 556
Bme1390I	CCNGG	3 cut(s)	64, 65, 218
Bme18I	GGWCC	1 cut(s)	230
BmeT110I	CYCGRG	2 cut(s)	63, 296
BmgT120I	GGNCC	2 cut(s)	214, 230
BmiI	GGNNCC	6 cut(s)	69, 109, 216, 231, 232, 385
BmrFI	CCNGG	3 cut(s)	64, 65, 218
BmrI	ACTGGG	1 cut(s)	312
BmsI	GCATC	1 cut(s)	517
BmuI	ACTGGG	1 cut(s)	312
Bpu1102I	GCTNAGC	1 cut(s)	163
BpuMI	CCSGG	3 cut(s)	64, 65, 218
BsaHI	GRCGYC	1 cut(s)	384
BsaJI	CCNNGG	4 cut(s)	63, 78, 126, 216
BsaXI	ACNNNNNCTCC	2 cut(s)	52, 82
Bsc4I	CCNNNNNNNGG	3 cut(s)	117, 302, 303
Bse1I	ACTGG	1 cut(s)	307
Bse3DI	GCAATG	2 cut(s)	515, 549
BseDI	CCNNGG	4 cut(s)	63, 78, 126, 216
BseGI	GGATG	1 cut(s)	532
BseLI	CCNNNNNNNGG	3 cut(s)	117, 302, 303
BseMI	GCAATG	2 cut(s)	515, 549
BseMII	CTCAG	2 cut(s)	254, 309
BseNI	ACTGG	1 cut(s)	307
BseRI	GAGGAG	1 cut(s)	34
BseXI	GCAGC	1 cut(s)	208
BseYI	CCCAGC	1 cut(s)	487
Bsh1236I	CGCG	2 cut(s)	53, 151
BshFI	GGCC	2 cut(s)	215, 245
BshNI	GGYRCC	1 cut(s)	383
BsiHKCI	CYCGRG	2 cut(s)	63, 296
BsiSI	CCGG	2 cut(s)	64, 218
BslFI	GGGAC	1 cut(s)	243
BslI	CCNNNNNNNGG	3 cut(s)	117, 302, 303
BsmAI	GTCTC	1 cut(s)	293
BsmFI	GGGAC	1 cut(s)	243
BsnI	GGCC	2 cut(s)	215, 245
BsoBI	CYCGRG	2 cut(s)	63, 296
Bsp1286I	GDGCHC	1 cut(s)	70
Bsp143I	GATC	3 cut(s)	122, 331, 456
Bsp1720I	GCTNAGC	1 cut(s)	163
BspACI	CCGC	3 cut(s)	14, 101, 512
BspANI	GGCC	2 cut(s)	215, 245
BspCNI	CTCAG	2 cut(s)	253, 310
BspFNI	CGCG	2 cut(s)	53, 151
BspLI	GGNNCC	6 cut(s)	69, 109, 216, 231, 232, 385
BspMI	ACCTGC	1 cut(s)	334
BspPI	GGATC	1 cut(s)	117
BspT107I	GGYRCC	1 cut(s)	383
BsrDI	GCAATG	2 cut(s)	515, 549
BsrI	ACTGG	1 cut(s)	307
BssECI	CCNNGG	4 cut(s)	63, 78, 126, 216
BssMI	GATC	3 cut(s)	122, 331, 456
BssNI	GRCGYC	1 cut(s)	384
Bst4CI	ACNGT	1 cut(s)	561
Bst6I	CTCTTC	1 cut(s)	151
BstACI	GRCGYC	1 cut(s)	384
BstC8I	GCNNGC	2 cut(s)	106, 160
BstDEI	CTNAG	3 cut(s)	163, 240, 318
BstDSI	CCRYGG	1 cut(s)	78
BstF5I	GGATG	1 cut(s)	532
BstFNI	CGCG	2 cut(s)	53, 151
BstH2I	RGCGCY	1 cut(s)	387
BstHHI	GCGC	4 cut(s)	53, 60, 153, 386
BstKTI	GATC	3 cut(s)	125, 334, 459
BstMAI	GTCTC	1 cut(s)	293
BstMBI	GATC	3 cut(s)	122, 331, 456
BstSCI	CCNGG	3 cut(s)	62, 63, 216
BstUI	CGCG	2 cut(s)	53, 151
BstV1I	GCAGC	1 cut(s)	208
BstX2I	RGATCY	1 cut(s)	456
BstXI	CCANNNNNNTGG	1 cut(s)	275
BstYI	RGATCY	1 cut(s)	456
BsuRI	GGCC	2 cut(s)	215, 245
BtgI	CCRYGG	1 cut(s)	78
BtsCI	GGATG	1 cut(s)	532
BtsIMutI	CAGTG	2 cut(s)	174, 557
BveI	ACCTGC	1 cut(s)	334
Cac8I	GCNNGC	2 cut(s)	106, 160
CfoI	GCGC	4 cut(s)	53, 60, 153, 386
Cfr13I	GGNCC	2 cut(s)	214, 230
Cfr9I	CCCGGG	1 cut(s)	63
CseI	GACGC	1 cut(s)	188
CviAII	CATG	1 cut(s)	269
DdeI	CTNAG	3 cut(s)	163, 240, 318
DinI	GGCGCC	1 cut(s)	385
DpnI	GATC	3 cut(s)	124, 333, 458
DpnII	GATC	3 cut(s)	122, 331, 456
Eam1104I	CTCTTC	1 cut(s)	151
EarI	CTCTTC	1 cut(s)	151
Eco24I	GRGCYC	1 cut(s)	70
Eco47I	GGWCC	1 cut(s)	230
Eco88I	CYCGRG	2 cut(s)	63, 296
EcoO109I	RGGNCCY	2 cut(s)	214, 230
EcoT38I	GRGCYC	1 cut(s)	70
EgeI	GGCGCC	1 cut(s)	385
EheI	GGCGCC	1 cut(s)	385
FaeI	CATG	1 cut(s)	272
FaiI	YATR	4 cut(s)	270, 314, 359, 462
FaqI	GGGAC	1 cut(s)	243
FatI	CATG	1 cut(s)	268
Fnu4HI	GCNGC	5 cut(s)	15, 102, 222, 513, 555
FokI	GGATG	1 cut(s)	539
FriOI	GRGCYC	1 cut(s)	70
Fsp4HI	GCNGC	5 cut(s)	15, 102, 222, 513, 555
FspI	TGCGCA	1 cut(s)	59
GlaI	GCGC	4 cut(s)	52, 59, 152, 385
GluI	GCNGC	5 cut(s)	15, 102, 222, 513, 555
GsaI	CCCAGC	1 cut(s)	491
HaeII	RGCGCY	1 cut(s)	387
HaeIII	GGCC	2 cut(s)	215, 245
HapII	CCGG	2 cut(s)	64, 218
HgaI	GACGC	1 cut(s)	188
HhaI	GCGC	4 cut(s)	53, 60, 153, 386
Hin1I	GRCGYC	1 cut(s)	384
Hin1II	CATG	1 cut(s)	272
Hin6I	GCGC	4 cut(s)	51, 58, 151, 384
HinP1I	GCGC	4 cut(s)	51, 58, 151, 384
HinfI	GANTC	2 cut(s)	186, 292
HpaII	CCGG	2 cut(s)	64, 218
HphI	GGTGA	1 cut(s)	471
Hpy166II	GTNNAC	1 cut(s)	202
Hpy188I	TCNGA	3 cut(s)	291, 319, 336
Hpy188III	TCNNGA	2 cut(s)	296, 442
Hpy8I	GTNNAC	1 cut(s)	202
HpyCH4III	ACNGT	1 cut(s)	561
HpyCH4V	TGCA	3 cut(s)	224, 549, 554
HpyF3I	CTNAG	3 cut(s)	163, 240, 318
Hsp92I	GRCGYC	1 cut(s)	384
Hsp92II	CATG	1 cut(s)	272
HspAI	GCGC	4 cut(s)	51, 58, 151, 384
KasI	GGCGCC	1 cut(s)	383
KflI	GGGWCCC	1 cut(s)	230
Kzo9I	GATC	3 cut(s)	122, 331, 456
LmnI	GCTCC	3 cut(s)	21, 73, 113
Lsp1109I	GCAGC	1 cut(s)	208
LweI	GCATC	1 cut(s)	517
MaeIII	GTNAC	1 cut(s)	477
MalI	GATC	3 cut(s)	124, 333, 458
MboI	GATC	3 cut(s)	122, 331, 456
MboII	GAAGA	3 cut(s)	138, 341, 387
MflI	RGATCY	1 cut(s)	456
MhlI	GDGCHC	1 cut(s)	70
MluCI	AATT	2 cut(s)	414, 540
Mly113I	GGCGCC	1 cut(s)	384
MnlI	CCTC	3 cut(s)	12, 136, 154
MroXI	GAANNNNTTC	2 cut(s)	198, 437
MseI	TTAA	1 cut(s)	405
MspI	CCGG	2 cut(s)	64, 218
MspR9I	CCNGG	3 cut(s)	64, 65, 218
MvnI	CGCG	2 cut(s)	53, 151
NarI	GGCGCC	1 cut(s)	384
NciI	CCSGG	3 cut(s)	64, 65, 218
NdeII	GATC	3 cut(s)	122, 331, 456
NlaIII	CATG	1 cut(s)	272
NlaIV	GGNNCC	6 cut(s)	69, 109, 216, 231, 232, 385
NmeAIII	GCCGAG	1 cut(s)	107
NmuCI	GTSAC	1 cut(s)	477
NsbI	TGCGCA	1 cut(s)	59
PcsI	WCGNNNNNNNCGW	1 cut(s)	134
PdmI	GAANNNNTTC	2 cut(s)	198, 437
PfeI	GAWTC	2 cut(s)	186, 292
PflMI	CCANNNNNTGG	1 cut(s)	117
PkrI	GCNGC	5 cut(s)	16, 103, 223, 514, 556
PluTI	GGCGCC	1 cut(s)	387
PpuMI	RGGWCCY	1 cut(s)	230
Psp5II	RGGWCCY	1 cut(s)	230
PspFI	CCCAGC	1 cut(s)	487
PspN4I	GGNNCC	6 cut(s)	69, 109, 216, 231, 232, 385
PspPI	GGNCC	2 cut(s)	214, 230
PspPPI	RGGWCCY	1 cut(s)	230
PsuI	RGATCY	1 cut(s)	456
SaqAI	TTAA	1 cut(s)	405
SatI	GCNGC	5 cut(s)	15, 102, 222, 513, 555
Sau3AI	GATC	3 cut(s)	122, 331, 456
Sau96I	GGNCC	2 cut(s)	214, 230
ScrFI	CCNGG	3 cut(s)	64, 65, 218
SduI	GDGCHC	1 cut(s)	70
SetI	ASST	5 cut(s)	26, 199, 348, 493, 510
SfaNI	GCATC	1 cut(s)	517
SfoI	GGCGCC	1 cut(s)	385
SinI	GGWCC	1 cut(s)	230
SmaI	CCCGGG	1 cut(s)	65
Sse9I	AATT	2 cut(s)	414, 540
SsiI	CCGC	3 cut(s)	14, 101, 512
SspDI	GGCGCC	1 cut(s)	383
SspI	AATATT	1 cut(s)	470
StyD4I	CCNGG	3 cut(s)	62, 63, 216
TaaI	ACNGT	1 cut(s)	561
TaqI	TCGA	3 cut(s)	42, 137, 184
TasI	AATT	2 cut(s)	414, 540
TauI	GCSGC	3 cut(s)	17, 104, 515
TfiI	GAWTC	2 cut(s)	186, 292
Tru1I	TTAA	1 cut(s)	405
Tru9I	TTAA	1 cut(s)	405
TscAI	CASTG	2 cut(s)	181, 564
TseFI	GTSAC	1 cut(s)	477
TseI	GCWGC	2 cut(s)	221, 554
Tsp45I	GTSAC	1 cut(s)	477
TspDTI	ATGAA	2 cut(s)	123, 301
TspGWI	ACGGA	2 cut(s)	60, 465
TspMI	CCCGGG	1 cut(s)	63
TspRI	CASTG	2 cut(s)	181, 564
Van91I	CCANNNNNTGG	1 cut(s)	117
VpaK11BI	GGWCC	1 cut(s)	230
XmaI	CCCGGG	1 cut(s)	63
XmnI	GAANNNNTTC	2 cut(s)	198, 437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.