Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0006616

Physical Location & Seq

Genomic Coordinates Forward (+)

27431712 .. 27434266

Gene Structure 2555 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1200800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGCGTGGTGTGCGGCAAGGACCTTCCACATGCCGGCGGTTGACATGGGGGCATTGCGCACCCGAGCTCCGTTAGCCGCCGGCGCGGGCTTTGCCTCGGTCGCTGGCTCCACTTTCTGGCGATCCTTGGCTTCATCGAAGCCCTCCTCTCGCTTCGCTTGCTTAGCCATTTCCACCGACGCTCGAATTAAGGAAGCTGTCCACACAGAAAAGGCTCCCGCTGCATTGGGACCGTATTCTCAGGCAATCAAAGCCAACAACTTTGTCTATGTGTCGGGTTGTCTTGGTCTGATTCCAGAGACCGGAAAGTTCGTATCCGATGATGTTGAAGATCAGACAGAGCAGGTTCTAAAAAATATGGGGGAAATACTGAAAGCAAGCGGGGCCAGCTATTCCTCTGTGGTTAAAACGACTATACTGTTGGCTGATTTGAAAGACTTCAAGAAAGTCAATGAAATCTATGCTAAATATTTTCCATCTCCAGCCCCAGCGCGTTCAACATTTCAGGTAGCGGCACTGCCACTGGATGCCAAGATTGAAATTGAGTGCATTGCAGCGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0006082 GO:0006520 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009081 GO:0009082 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0009987 GO:0010035 GO:0010038 GO:0016053 GO:0016787 GO:0019239 GO:0019752 GO:0031967 GO:0031975 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046686 GO:0050896 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribonuc_L-PSP

Protein Analysis

188

Amino Acids

19.88

Weight (kDa)

8.66

Isoelectric Point (pI)

50.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonuc_L-PSP	PF01042	69 - 186	2.3e-43	Endoribonuclease L-PSP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006616)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20390 AT3G20390
fragaria_vesca	FvH4_3g22680
malus_domestica	MD03G1200800.v1.1 MD11G1217800.v1.1 MD11G1218500.v1.1
prunus_persica	Prupe.4G213500_v2.0.a1 Prupe.4G213500_v2.0.a1
pyrus_communis	pycom03g15230 pycom11g19160 pycom11g19180 pycom11g19200
rosa_chinensis	RchiOBHm_Chr5g0039491
rosa_laevigata	RLG00000033922
rosa_multiflora	Rmu_sc0001204.1_g000001 Rmu_ssc0000400.1_g000035
rosa_roxburghii	Rroxscaffold_1G00040710 Rroxscaffold_1G00041660
rosa_rugosa	Rorug05G0179900 Rorug05G0180000
rosa_samantha	Rh5AG267100 Rh5BG271300 Rh5CG303900 Rh5DG278800
rosa_wichuraiana	Rw0G005700 Rw5G024960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	59
Acc36I	ACCTGC	1 cut(s)	334
AccB7I	CCANNNNNTGG	1 cut(s)	117
AccII	CGCG	2 cut(s)	86, 493
AciI	CCGC	7 cut(s)	14, 38, 78, 86, 219, 381, 512
AclWI	GGATC	1 cut(s)	117
AfeI	AGCGCT	1 cut(s)	558
AfiI	CCNNNNNNNGG	3 cut(s)	34, 117, 302
AgsI	TTSAA	5 cut(s)	329, 433, 442, 498, 539
AluBI	AGCT	3 cut(s)	68, 197, 390
AluI	AGCT	3 cut(s)	68, 197, 390
Alw21I	GWGCWC	1 cut(s)	70
Alw26I	GTCTC	1 cut(s)	293
AlwI	GGATC	1 cut(s)	117
Ama87I	CYCGRG	1 cut(s)	63
Aor51HI	AGCGCT	1 cut(s)	558
AoxI	GGCC	1 cut(s)	384
ApeKI	GCWGC	2 cut(s)	221, 554
Asp700I	GAANNNNTTC	1 cut(s)	437
AspLEI	GCGC	4 cut(s)	60, 86, 493, 559
AspS9I	GGNCC	3 cut(s)	21, 230, 384
AvaI	CYCGRG	1 cut(s)	63
AvaII	GGWCC	2 cut(s)	21, 230
BanII	GRGCYC	1 cut(s)	70
Bbv12I	GWGCWC	1 cut(s)	70
BbvI	GCAGC	1 cut(s)	208
BccI	CCATC	1 cut(s)	484
BciVI	GTATCC	1 cut(s)	325
BcoDI	GTCTC	1 cut(s)	293
BfoI	RGCGCY	1 cut(s)	560
BfuAI	ACCTGC	1 cut(s)	334
BfuI	GTATCC	1 cut(s)	325
BisI	GCNGC	5 cut(s)	15, 78, 222, 513, 555
BlpI	GCTNAGC	1 cut(s)	163
BlsI	GCNGC	5 cut(s)	16, 79, 223, 514, 556
Bme18I	GGWCC	2 cut(s)	21, 230
BmeT110I	CYCGRG	1 cut(s)	63
BmgT120I	GGNCC	3 cut(s)	21, 230, 384
BmiI	GGNNCC	4 cut(s)	109, 216, 231, 385
BmsI	GCATC	1 cut(s)	517
BpmI	CTGGAG	1 cut(s)	465
Bpu1102I	GCTNAGC	1 cut(s)	163
BsaI	GGTCTC	1 cut(s)	293
BsaJI	CCNNGG	2 cut(s)	96, 126
BsaWI	WCCGGW	1 cut(s)	302
BsaXI	ACNNNNNCTCC	2 cut(s)	52, 82
Bsc4I	CCNNNNNNNGG	3 cut(s)	34, 117, 302
Bse118I	RCCGGY	2 cut(s)	34, 80
Bse1I	ACTGG	1 cut(s)	528
Bse3DI	GCAATG	2 cut(s)	53, 549
BseDI	CCNNGG	2 cut(s)	96, 126
BseGI	GGATG	1 cut(s)	532
BseLI	CCNNNNNNNGG	3 cut(s)	34, 117, 302
BseMI	GCAATG	2 cut(s)	53, 549
BseMII	CTCAG	1 cut(s)	254
BseNI	ACTGG	1 cut(s)	528
BseRI	GAGGAG	1 cut(s)	136
BseXI	GCAGC	1 cut(s)	208
BseYI	CCCAGC	1 cut(s)	487
Bsh1236I	CGCG	2 cut(s)	86, 493
Bsh1285I	CGRYCG	1 cut(s)	102
BshFI	GGCC	1 cut(s)	386
BsiEI	CGRYCG	1 cut(s)	102
BsiHKAI	GWGCWC	1 cut(s)	70
BsiHKCI	CYCGRG	1 cut(s)	63
BsiSI	CCGG	3 cut(s)	35, 81, 303
BslFI	GGGAC	1 cut(s)	243
BslI	CCNNNNNNNGG	3 cut(s)	34, 117, 302
BsmAI	GTCTC	1 cut(s)	293
BsmFI	GGGAC	1 cut(s)	243
BsnI	GGCC	1 cut(s)	386
Bso31I	GGTCTC	1 cut(s)	293
BsoBI	CYCGRG	1 cut(s)	63
Bsp1286I	GDGCHC	1 cut(s)	70
Bsp143I	GATC	2 cut(s)	122, 331
Bsp1720I	GCTNAGC	1 cut(s)	163
BspACI	CCGC	7 cut(s)	14, 38, 78, 86, 219, 381, 512
BspANI	GGCC	1 cut(s)	386
BspCNI	CTCAG	1 cut(s)	253
BspFNI	CGCG	2 cut(s)	86, 493
BspLI	GGNNCC	4 cut(s)	109, 216, 231, 385
BspMI	ACCTGC	1 cut(s)	334
BspPI	GGATC	1 cut(s)	117
BspTNI	GGTCTC	1 cut(s)	293
BsrDI	GCAATG	2 cut(s)	53, 549
BsrFI	RCCGGY	2 cut(s)	34, 80
BsrI	ACTGG	1 cut(s)	528
BssAI	RCCGGY	2 cut(s)	34, 80
BssECI	CCNNGG	2 cut(s)	96, 126
BssMI	GATC	2 cut(s)	122, 331
BssT1I	CCWWGG	1 cut(s)	126
Bst4CI	ACNGT	2 cut(s)	234, 420
BstC8I	GCNNGC	7 cut(s)	36, 82, 88, 106, 160, 379, 388
BstDEI	CTNAG	2 cut(s)	163, 240
BstF5I	GGATG	1 cut(s)	532
BstFNI	CGCG	2 cut(s)	86, 493
BstH2I	RGCGCY	1 cut(s)	560
BstHHI	GCGC	4 cut(s)	60, 86, 493, 559
BstKTI	GATC	2 cut(s)	125, 334
BstMAI	GTCTC	1 cut(s)	293
BstMBI	GATC	2 cut(s)	122, 331
BstMCI	CGRYCG	1 cut(s)	102
BstNSI	RCATGY	1 cut(s)	34
BstUI	CGCG	2 cut(s)	86, 493
BstV1I	GCAGC	1 cut(s)	208
BsuI	GTATCC	1 cut(s)	325
BsuRI	GGCC	1 cut(s)	386
BtsCI	GGATG	1 cut(s)	532
BtsI	GCAGTG	1 cut(s)	515
BtsIMutI	CAGTG	2 cut(s)	515, 521
BveI	ACCTGC	1 cut(s)	334
Cac8I	GCNNGC	7 cut(s)	36, 82, 88, 106, 160, 379, 388
CfoI	GCGC	4 cut(s)	60, 86, 493, 559
Cfr10I	RCCGGY	2 cut(s)	34, 80
Cfr13I	GGNCC	3 cut(s)	21, 230, 384
CseI	GACGC	1 cut(s)	188
CviAII	CATG	2 cut(s)	31, 46
DdeI	CTNAG	2 cut(s)	163, 240
DpnI	GATC	2 cut(s)	124, 333
DpnII	GATC	2 cut(s)	122, 331
Ecl136II	GAGCTC	1 cut(s)	68
Eco130I	CCWWGG	1 cut(s)	126
Eco24I	GRGCYC	1 cut(s)	70
Eco31I	GGTCTC	1 cut(s)	293
Eco47I	GGWCC	2 cut(s)	21, 230
Eco47III	AGCGCT	1 cut(s)	558
Eco53kI	GAGCTC	1 cut(s)	68
Eco88I	CYCGRG	1 cut(s)	63
EcoICRI	GAGCTC	1 cut(s)	68
EcoO109I	RGGNCCY	1 cut(s)	21
EcoT14I	CCWWGG	1 cut(s)	126
EcoT38I	GRGCYC	1 cut(s)	70
ErhI	CCWWGG	1 cut(s)	126
FaeI	CATG	2 cut(s)	34, 49
FaiI	YATR	6 cut(s)	32, 47, 270, 359, 416, 462
FaqI	GGGAC	1 cut(s)	243
FatI	CATG	2 cut(s)	30, 45
FauI	CCCGC	3 cut(s)	79, 226, 374
Fnu4HI	GCNGC	5 cut(s)	15, 78, 222, 513, 555
FokI	GGATG	1 cut(s)	539
FriOI	GRGCYC	1 cut(s)	70
Fsp4HI	GCNGC	5 cut(s)	15, 78, 222, 513, 555
FspI	TGCGCA	1 cut(s)	59
GlaI	GCGC	4 cut(s)	59, 85, 492, 558
GluI	GCNGC	5 cut(s)	15, 78, 222, 513, 555
GsaI	CCCAGC	1 cut(s)	491
GsuI	CTGGAG	1 cut(s)	465
HaeII	RGCGCY	1 cut(s)	560
HaeIII	GGCC	1 cut(s)	386
HapII	CCGG	3 cut(s)	35, 81, 303
HgaI	GACGC	1 cut(s)	188
HhaI	GCGC	4 cut(s)	60, 86, 493, 559
Hin1II	CATG	2 cut(s)	34, 49
Hin6I	GCGC	4 cut(s)	58, 84, 491, 557
HinP1I	GCGC	4 cut(s)	58, 84, 491, 557
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
HinfI	GANTC	1 cut(s)	292
HpaII	CCGG	3 cut(s)	35, 81, 303
Hpy166II	GTNNAC	2 cut(s)	43, 202
Hpy188I	TCNGA	3 cut(s)	291, 319, 336
Hpy188III	TCNNGA	2 cut(s)	296, 442
Hpy8I	GTNNAC	2 cut(s)	43, 202
Hpy99I	CGWCG	1 cut(s)	182
HpyAV	CCTTC	1 cut(s)	34
HpyCH4III	ACNGT	2 cut(s)	234, 420
HpyCH4V	TGCA	3 cut(s)	224, 549, 554
HpyF3I	CTNAG	2 cut(s)	163, 240
Hsp92II	CATG	2 cut(s)	34, 49
HspAI	GCGC	4 cut(s)	58, 84, 491, 557
KroI	GCCGGC	2 cut(s)	34, 80
KroNI	GCCGGC	2 cut(s)	36, 82
Kzo9I	GATC	2 cut(s)	122, 331
LmnI	GCTCC	3 cut(s)	73, 113, 220
Lsp1109I	GCAGC	1 cut(s)	208
LweI	GCATC	1 cut(s)	517
MalI	GATC	2 cut(s)	124, 333
MboI	GATC	2 cut(s)	122, 331
MboII	GAAGA	1 cut(s)	341
MhlI	GDGCHC	1 cut(s)	70
MluCI	AATT	2 cut(s)	186, 540
MnlI	CCTC	4 cut(s)	106, 154, 157, 406
MreI	CGCCGGCG	1 cut(s)	80
MroNI	GCCGGC	2 cut(s)	34, 80
MroXI	GAANNNNTTC	1 cut(s)	437
MseI	TTAA	2 cut(s)	189, 405
MspA1I	CMGCKG	1 cut(s)	221
MspI	CCGG	3 cut(s)	35, 81, 303
MvnI	CGCG	2 cut(s)	86, 493
NaeI	GCCGGC	2 cut(s)	36, 82
NdeII	GATC	2 cut(s)	122, 331
NgoMIV	GCCGGC	2 cut(s)	34, 80
NlaIII	CATG	2 cut(s)	34, 49
NlaIV	GGNNCC	4 cut(s)	109, 216, 231, 385
NsbI	TGCGCA	1 cut(s)	59
NspI	RCATGY	1 cut(s)	34
PdiI	GCCGGC	2 cut(s)	36, 82
PdmI	GAANNNNTTC	1 cut(s)	437
PfeI	GAWTC	1 cut(s)	292
PflMI	CCANNNNNTGG	1 cut(s)	117
PkrI	GCNGC	5 cut(s)	16, 79, 223, 514, 556
PpuMI	RGGWCCY	1 cut(s)	21
Psp124BI	GAGCTC	1 cut(s)	70
Psp5II	RGGWCCY	1 cut(s)	21
PspFI	CCCAGC	1 cut(s)	487
PspN4I	GGNNCC	4 cut(s)	109, 216, 231, 385
PspPI	GGNCC	3 cut(s)	21, 230, 384
PspPPI	RGGWCCY	1 cut(s)	21
SacI	GAGCTC	1 cut(s)	70
SaqAI	TTAA	2 cut(s)	189, 405
SatI	GCNGC	5 cut(s)	15, 78, 222, 513, 555
Sau3AI	GATC	2 cut(s)	122, 331
Sau96I	GGNCC	3 cut(s)	21, 230, 384
SduI	GDGCHC	1 cut(s)	70
SetI	ASST	6 cut(s)	26, 70, 199, 348, 392, 510
SfaNI	GCATC	1 cut(s)	517
SgrAI	CRCCGGYG	1 cut(s)	80
SinI	GGWCC	2 cut(s)	21, 230
Sse9I	AATT	2 cut(s)	186, 540
SsiI	CCGC	7 cut(s)	14, 38, 78, 86, 219, 381, 512
SspI	AATATT	1 cut(s)	470
SstI	GAGCTC	1 cut(s)	70
StyI	CCWWGG	1 cut(s)	126
TaaI	ACNGT	2 cut(s)	234, 420
TaqI	TCGA	2 cut(s)	137, 184
TaqII	GACCGA	1 cut(s)	88
TasI	AATT	2 cut(s)	186, 540
TauI	GCSGC	3 cut(s)	17, 80, 515
TfiI	GAWTC	1 cut(s)	292
Tru1I	TTAA	2 cut(s)	189, 405
Tru9I	TTAA	2 cut(s)	189, 405
TscAI	CASTG	2 cut(s)	522, 528
TseI	GCWGC	2 cut(s)	221, 554
TspDTI	ATGAA	2 cut(s)	123, 468
TspGWI	ACGGA	1 cut(s)	60
TspRI	CASTG	2 cut(s)	522, 528
Van91I	CCANNNNNTGG	1 cut(s)	117
VpaK11BI	GGWCC	2 cut(s)	21, 230
XceI	RCATGY	1 cut(s)	34
XmnI	GAANNNNTTC	1 cut(s)	437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.