Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0006616

Physical Location & Seq

Genomic Coordinates Forward (+)

21426678 .. 21428732

Gene Structure 2055 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g19160.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGCATGGTGTGCGGCGAGGAGCTTTCACATGCCGGCGCTCGACATGGCCGCATTGCGCACCCGGGCTCCGTTAGCCGCCGGCGCGGGCTTTGCCTCGGTTGCCGGTTCCACTCTCTGGCGATCCTTGGCTTCATCGAAGCCCTCGTCTCGCTTTGCTTGCTTAGCCATTTCCACCGATGCTCGAATTAAGGAAGCTGTTCACACAGACAAGGCTCCGGCTGCATTGGGACCGTATTCTCAGGCAATCAAGGCCAACAACTTTCTCCATGTGTCGGGTTGTCTTGGTCTGATTCCTGAGACAGGGAAGTTTGTGTCGGATAATGTTGAAGATCAGACAGAGCAGGTTCTAAAAAATATGGGGGAAATACTGAAAGCAAGCGGGGCCAGCTATTCTTCTGTGGTTAAAACGACTATTCTGTTGGCTGATTTGAAAGACTTCAAGAAAGTCAATGAAATCTATGCTAAATATTTTCCATCTCCAGCCCCAGCACGTTCAACATTTCAGGTAGCGGCGCTGCCATTGGATGCCAAGATTGAAATTGAGTGCATTGCAGCACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0006082 GO:0006520 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009081 GO:0009082 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0009987 GO:0010035 GO:0010038 GO:0016053 GO:0016787 GO:0019239 GO:0019752 GO:0031967 GO:0031975 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046686 GO:0050896 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribonuc_L-PSP

Protein Analysis

188

Amino Acids

19.83

Weight (kDa)

8.9

Isoelectric Point (pI)

54.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006616)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20390 AT3G20390
fragaria_vesca	FvH4_3g22680
malus_domestica	MD03G1200800.v1.1 MD11G1217800.v1.1 MD11G1218500.v1.1
prunus_persica	Prupe.4G213500_v2.0.a1 Prupe.4G213500_v2.0.a1
pyrus_communis	pycom03g15230 pycom11g19160 pycom11g19180 pycom11g19200
rosa_chinensis	RchiOBHm_Chr5g0039491
rosa_laevigata	RLG00000033922
rosa_multiflora	Rmu_sc0001204.1_g000001 Rmu_ssc0000400.1_g000035
rosa_roxburghii	Rroxscaffold_1G00040710 Rroxscaffold_1G00041660
rosa_rugosa	Rorug05G0179900 Rorug05G0180000
rosa_samantha	Rh5AG267100 Rh5BG271300 Rh5CG303900 Rh5DG278800
rosa_wichuraiana	Rw0G005700 Rw5G024960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	59
Acc36I	ACCTGC	1 cut(s)	334
AccB7I	CCANNNNNTGG	1 cut(s)	117
AccII	CGCG	1 cut(s)	86
AciI	CCGC	6 cut(s)	14, 51, 78, 86, 381, 512
AclWI	GGATC	1 cut(s)	117
AcoI	YGGCCR	1 cut(s)	48
AfiI	CCNNNNNNNGG	3 cut(s)	117, 274, 302
AgsI	TTSAA	5 cut(s)	329, 433, 442, 498, 539
AluBI	AGCT	3 cut(s)	24, 197, 390
AluI	AGCT	3 cut(s)	24, 197, 390
Alw26I	GTCTC	2 cut(s)	153, 293
AlwI	GGATC	1 cut(s)	117
Ama87I	CYCGRG	1 cut(s)	63
AoxI	GGCC	3 cut(s)	48, 252, 384
ApeKI	GCWGC	3 cut(s)	221, 517, 554
ArsI	GACNNNNNNTTYG	2 cut(s)	131, 163
Asp700I	GAANNNNTTC	2 cut(s)	198, 437
AspLEI	GCGC	4 cut(s)	40, 60, 86, 517
AspS9I	GGNCC	2 cut(s)	230, 384
AsuC2I	CCSGG	2 cut(s)	64, 65
AvaI	CYCGRG	1 cut(s)	63
AvaII	GGWCC	1 cut(s)	230
BanII	GRGCYC	1 cut(s)	70
BbvI	GCAGC	2 cut(s)	208, 504
BccI	CCATC	1 cut(s)	484
BcnI	CCSGG	2 cut(s)	64, 65
BcoDI	GTCTC	2 cut(s)	153, 293
BfoI	RGCGCY	2 cut(s)	41, 518
BfuAI	ACCTGC	1 cut(s)	334
BisI	GCNGC	7 cut(s)	15, 51, 78, 222, 513, 518, 555
BlpI	GCTNAGC	1 cut(s)	163
BlsI	GCNGC	7 cut(s)	16, 52, 79, 223, 514, 519, 556
Bme1390I	CCNGG	2 cut(s)	64, 65
Bme18I	GGWCC	1 cut(s)	230
BmeT110I	CYCGRG	1 cut(s)	63
BmgT120I	GGNCC	2 cut(s)	230, 384
BmiI	GGNNCC	5 cut(s)	69, 109, 216, 231, 385
BmrFI	CCNGG	2 cut(s)	64, 65
BmsI	GCATC	2 cut(s)	169, 517
BpmI	CTGGAG	1 cut(s)	465
Bpu1102I	GCTNAGC	1 cut(s)	163
BpuMI	CCSGG	2 cut(s)	64, 65
BsaJI	CCNNGG	3 cut(s)	63, 96, 126
BsaXI	ACNNNNNCTCC	2 cut(s)	52, 82
Bsc4I	CCNNNNNNNGG	3 cut(s)	117, 274, 302
Bse118I	RCCGGY	3 cut(s)	34, 80, 104
Bse3DI	GCAATG	2 cut(s)	53, 549
BseDI	CCNNGG	3 cut(s)	63, 96, 126
BseGI	GGATG	1 cut(s)	532
BseLI	CCNNNNNNNGG	3 cut(s)	117, 274, 302
BseMI	GCAATG	2 cut(s)	53, 549
BseMII	CTCAG	2 cut(s)	254, 288
BseRI	GAGGAG	1 cut(s)	34
BseXI	GCAGC	2 cut(s)	208, 504
BseYI	CCCAGC	1 cut(s)	487
Bsh1236I	CGCG	1 cut(s)	86
BshFI	GGCC	3 cut(s)	50, 254, 386
BsiHKCI	CYCGRG	1 cut(s)	63
BsiSI	CCGG	5 cut(s)	35, 64, 81, 105, 218
BslFI	GGGAC	1 cut(s)	243
BslI	CCNNNNNNNGG	3 cut(s)	117, 274, 302
BsmAI	GTCTC	2 cut(s)	153, 293
BsmBI	CGTCTC	1 cut(s)	153
BsmFI	GGGAC	1 cut(s)	243
BsnI	GGCC	3 cut(s)	50, 254, 386
BsoBI	CYCGRG	1 cut(s)	63
Bsp1286I	GDGCHC	1 cut(s)	70
Bsp143I	GATC	2 cut(s)	122, 331
Bsp1720I	GCTNAGC	1 cut(s)	163
BspACI	CCGC	6 cut(s)	14, 51, 78, 86, 381, 512
BspANI	GGCC	3 cut(s)	50, 254, 386
BspCNI	CTCAG	2 cut(s)	253, 289
BspFNI	CGCG	1 cut(s)	86
BspLI	GGNNCC	5 cut(s)	69, 109, 216, 231, 385
BspMI	ACCTGC	1 cut(s)	334
BspPI	GGATC	1 cut(s)	117
BsrDI	GCAATG	2 cut(s)	53, 549
BsrFI	RCCGGY	3 cut(s)	34, 80, 104
BssAI	RCCGGY	3 cut(s)	34, 80, 104
BssECI	CCNNGG	3 cut(s)	63, 96, 126
BssMI	GATC	2 cut(s)	122, 331
BssT1I	CCWWGG	1 cut(s)	126
Bst4CI	ACNGT	2 cut(s)	234, 561
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstC8I	GCNNGC	6 cut(s)	36, 82, 88, 160, 379, 388
BstDEI	CTNAG	3 cut(s)	163, 240, 297
BstENI	CCTNNNNNAGG	1 cut(s)	300
BstF5I	GGATG	1 cut(s)	532
BstFNI	CGCG	1 cut(s)	86
BstH2I	RGCGCY	2 cut(s)	41, 518
BstHHI	GCGC	4 cut(s)	40, 60, 86, 517
BstKTI	GATC	2 cut(s)	125, 334
BstMAI	GTCTC	2 cut(s)	153, 293
BstMBI	GATC	2 cut(s)	122, 331
BstNSI	RCATGY	1 cut(s)	34
BstSCI	CCNGG	2 cut(s)	62, 63
BstUI	CGCG	1 cut(s)	86
BstV1I	GCAGC	2 cut(s)	208, 504
BsuRI	GGCC	3 cut(s)	50, 254, 386
BtsCI	GGATG	1 cut(s)	532
BtsIMutI	CAGTG	1 cut(s)	557
BveI	ACCTGC	1 cut(s)	334
Cac8I	GCNNGC	6 cut(s)	36, 82, 88, 160, 379, 388
CfoI	GCGC	4 cut(s)	40, 60, 86, 517
Cfr10I	RCCGGY	3 cut(s)	34, 80, 104
Cfr13I	GGNCC	2 cut(s)	230, 384
Cfr9I	CCCGGG	1 cut(s)	63
CviAII	CATG	4 cut(s)	6, 31, 46, 269
DdeI	CTNAG	3 cut(s)	163, 240, 297
DpnI	GATC	2 cut(s)	124, 333
DpnII	GATC	2 cut(s)	122, 331
EaeI	YGGCCR	1 cut(s)	48
Eco130I	CCWWGG	1 cut(s)	126
Eco24I	GRGCYC	1 cut(s)	70
Eco47I	GGWCC	1 cut(s)	230
Eco88I	CYCGRG	1 cut(s)	63
EcoNI	CCTNNNNNAGG	1 cut(s)	300
EcoT14I	CCWWGG	1 cut(s)	126
EcoT38I	GRGCYC	1 cut(s)	70
ErhI	CCWWGG	1 cut(s)	126
Esp3I	CGTCTC	1 cut(s)	153
FaeI	CATG	4 cut(s)	9, 34, 49, 272
FaiI	YATR	6 cut(s)	7, 32, 47, 270, 359, 462
FaqI	GGGAC	1 cut(s)	243
FatI	CATG	4 cut(s)	5, 30, 45, 268
FauI	CCCGC	2 cut(s)	79, 374
Fnu4HI	GCNGC	7 cut(s)	15, 51, 78, 222, 513, 518, 555
FokI	GGATG	1 cut(s)	539
FriOI	GRGCYC	1 cut(s)	70
Fsp4HI	GCNGC	7 cut(s)	15, 51, 78, 222, 513, 518, 555
FspI	TGCGCA	1 cut(s)	59
GlaI	GCGC	4 cut(s)	39, 59, 85, 516
GluI	GCNGC	7 cut(s)	15, 51, 78, 222, 513, 518, 555
GsaI	CCCAGC	1 cut(s)	491
GsuI	CTGGAG	1 cut(s)	465
HaeII	RGCGCY	2 cut(s)	41, 518
HaeIII	GGCC	3 cut(s)	50, 254, 386
HapII	CCGG	5 cut(s)	35, 64, 81, 105, 218
HhaI	GCGC	4 cut(s)	40, 60, 86, 517
Hin1II	CATG	4 cut(s)	9, 34, 49, 272
Hin6I	GCGC	4 cut(s)	38, 58, 84, 515
HinP1I	GCGC	4 cut(s)	38, 58, 84, 515
HinfI	GANTC	1 cut(s)	292
HpaII	CCGG	5 cut(s)	35, 64, 81, 105, 218
Hpy166II	GTNNAC	1 cut(s)	202
Hpy188I	TCNGA	3 cut(s)	291, 319, 336
Hpy188III	TCNNGA	2 cut(s)	296, 442
Hpy8I	GTNNAC	1 cut(s)	202
HpyCH4III	ACNGT	2 cut(s)	234, 561
HpyCH4IV	ACGT	1 cut(s)	493
HpyCH4V	TGCA	3 cut(s)	224, 549, 554
HpyF3I	CTNAG	3 cut(s)	163, 240, 297
HpySE526I	ACGT	1 cut(s)	493
Hsp92II	CATG	4 cut(s)	9, 34, 49, 272
HspAI	GCGC	4 cut(s)	38, 58, 84, 515
KroI	GCCGGC	2 cut(s)	34, 80
KroNI	GCCGGC	2 cut(s)	36, 82
Kzo9I	GATC	2 cut(s)	122, 331
LmnI	GCTCC	3 cut(s)	21, 73, 220
Lsp1109I	GCAGC	2 cut(s)	208, 504
LweI	GCATC	2 cut(s)	169, 517
MaeII	ACGT	1 cut(s)	493
MalI	GATC	2 cut(s)	124, 333
MboI	GATC	2 cut(s)	122, 331
MboII	GAAGA	2 cut(s)	341, 387
MhlI	GDGCHC	1 cut(s)	70
MluCI	AATT	2 cut(s)	186, 540
MmeI	TCCRAC	1 cut(s)	297
MnlI	CCTC	3 cut(s)	12, 106, 154
MreI	CGCCGGCG	1 cut(s)	80
MroNI	GCCGGC	2 cut(s)	34, 80
MroXI	GAANNNNTTC	2 cut(s)	198, 437
MseI	TTAA	2 cut(s)	189, 405
MspI	CCGG	5 cut(s)	35, 64, 81, 105, 218
MspR9I	CCNGG	2 cut(s)	64, 65
MvnI	CGCG	1 cut(s)	86
NaeI	GCCGGC	2 cut(s)	36, 82
NciI	CCSGG	2 cut(s)	64, 65
NdeII	GATC	2 cut(s)	122, 331
NgoMIV	GCCGGC	2 cut(s)	34, 80
NlaIII	CATG	4 cut(s)	9, 34, 49, 272
NlaIV	GGNNCC	5 cut(s)	69, 109, 216, 231, 385
NsbI	TGCGCA	1 cut(s)	59
NspI	RCATGY	1 cut(s)	34
PcsI	WCGNNNNNNNCGW	1 cut(s)	143
PdiI	GCCGGC	2 cut(s)	36, 82
PdmI	GAANNNNTTC	2 cut(s)	198, 437
PfeI	GAWTC	1 cut(s)	292
PflMI	CCANNNNNTGG	1 cut(s)	117
PkrI	GCNGC	7 cut(s)	16, 52, 79, 223, 514, 519, 556
PspFI	CCCAGC	1 cut(s)	487
PspN4I	GGNNCC	5 cut(s)	69, 109, 216, 231, 385
PspPI	GGNCC	2 cut(s)	230, 384
SaqAI	TTAA	2 cut(s)	189, 405
SatI	GCNGC	7 cut(s)	15, 51, 78, 222, 513, 518, 555
Sau3AI	GATC	2 cut(s)	122, 331
Sau96I	GGNCC	2 cut(s)	230, 384
ScrFI	CCNGG	2 cut(s)	64, 65
SduI	GDGCHC	1 cut(s)	70
SetI	ASST	6 cut(s)	26, 199, 348, 392, 496, 510
SfaNI	GCATC	2 cut(s)	169, 517
SgrAI	CRCCGGYG	1 cut(s)	80
SinI	GGWCC	1 cut(s)	230
SmaI	CCCGGG	1 cut(s)	65
Sse9I	AATT	2 cut(s)	186, 540
SsiI	CCGC	6 cut(s)	14, 51, 78, 86, 381, 512
SspI	AATATT	1 cut(s)	470
StyD4I	CCNGG	2 cut(s)	62, 63
StyI	CCWWGG	1 cut(s)	126
TaaI	ACNGT	2 cut(s)	234, 561
TaiI	ACGT	1 cut(s)	496
TaqI	TCGA	3 cut(s)	42, 137, 184
TasI	AATT	2 cut(s)	186, 540
TauI	GCSGC	4 cut(s)	17, 53, 80, 515
TfiI	GAWTC	1 cut(s)	292
Tru1I	TTAA	2 cut(s)	189, 405
Tru9I	TTAA	2 cut(s)	189, 405
TscAI	CASTG	1 cut(s)	564
TseI	GCWGC	3 cut(s)	221, 517, 554
TspDTI	ATGAA	2 cut(s)	123, 468
TspGWI	ACGGA	1 cut(s)	60
TspMI	CCCGGG	1 cut(s)	63
TspRI	CASTG	1 cut(s)	564
Van91I	CCANNNNNTGG	1 cut(s)	117
VpaK11BI	GGWCC	1 cut(s)	230
XagI	CCTNNNNNAGG	1 cut(s)	300
XceI	RCATGY	1 cut(s)	34
XmaI	CCCGGG	1 cut(s)	63
XmnI	GAANNNNTTC	2 cut(s)	198, 437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.