Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0006616

Physical Location & Seq

Genomic Coordinates Forward (+)

15707248 .. 15709547

Gene Structure 2300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g22680.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGCGTGGACTGCGGCGAGGAGCTTCCACATGCCGACGATCGATATGGCCGCACTGCGGACTCGGGCTCCATTAGCCGTCGGCGTCGGCTGTGCCTCGGTGGCCGGCTCCGGCTTGTGGCGATCCTCGATTTCATCCAAACCCTCTTCCCGCTTTGCTTGCTTGGCTACTTCCACCGACACTCGAATCAAGGAGGCTGTGAAAACAGATAAGGCGCCGGCTGCATTGGGACCCTATTCTCAGGCAATCAAAGCTAACAATGTCCTCTATGTGTCTGGTTGTCTTGGTCTGATTCCCGAGACGGGAAAGTTCGTCTCTGATGATGTTGAAGGTCAGACAGAGCAGGTTCTGAAGAATATGGGAGAAATACTGAAAGCAAGTGGTGCCGATTATTCCTCTGTGGTTAAAACAACTATTTTGTTAGCTGACTTGAAAGACTTCAAGGCAGTCAATGAGATCTATGCTAAATACTTTCCGTCCCCAGCTCCTGCACGCTCAACATTTCAGGTAGCGGCATTGCCATTGGACGCCAAGATTGAAATTGAGTGCATCGCAGCACTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0006082 GO:0006520 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009081 GO:0009082 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0009987 GO:0010035 GO:0010038 GO:0016053 GO:0016787 GO:0019239 GO:0019752 GO:0031967 GO:0031975 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046686 GO:0050896 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribonuc_L-PSP

Protein Analysis

188

Amino Acids

19.75

Weight (kDa)

8.65

Isoelectric Point (pI)

52.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonuc_L-PSP	PF01042	70 - 186	2.2e-42	Endoribonuclease L-PSP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006616)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20390 AT3G20390
fragaria_vesca	FvH4_3g22680
malus_domestica	MD03G1200800.v1.1 MD11G1217800.v1.1 MD11G1218500.v1.1
prunus_persica	Prupe.4G213500_v2.0.a1 Prupe.4G213500_v2.0.a1
pyrus_communis	pycom03g15230 pycom11g19160 pycom11g19180 pycom11g19200
rosa_chinensis	RchiOBHm_Chr5g0039491
rosa_laevigata	RLG00000033922
rosa_multiflora	Rmu_sc0001204.1_g000001 Rmu_ssc0000400.1_g000035
rosa_roxburghii	Rroxscaffold_1G00040710 Rroxscaffold_1G00041660
rosa_rugosa	Rorug05G0179900 Rorug05G0180000
rosa_samantha	Rh5AG267100 Rh5BG271300 Rh5CG303900 Rh5DG278800
rosa_wichuraiana	Rw0G005700 Rw5G024960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	334
AccB1I	GGYRCC	2 cut(s)	214, 383
AciI	CCGC	5 cut(s)	14, 51, 58, 151, 512
AclWI	GGATC	1 cut(s)	117
AcoI	YGGCCR	2 cut(s)	48, 102
AcuI	CTGAAG	1 cut(s)	371
AcyI	GRCGYC	3 cut(s)	84, 215, 528
AfiI	CCNNNNNNNGG	3 cut(s)	57, 117, 302
AgsI	TTSAA	4 cut(s)	329, 433, 442, 539
AluBI	AGCT	4 cut(s)	24, 254, 425, 485
AluI	AGCT	4 cut(s)	24, 254, 425, 485
Alw26I	GTCTC	2 cut(s)	293, 319
AlwI	GGATC	1 cut(s)	117
AlwNI	CAGNNNCTG	2 cut(s)	349, 488
Ama87I	CYCGRG	2 cut(s)	63, 296
AoxI	GGCC	2 cut(s)	48, 102
ApeKI	GCWGC	2 cut(s)	221, 554
Asp700I	GAANNNNTTC	1 cut(s)	437
AspLEI	GCGC	1 cut(s)	217
AspS9I	GGNCC	1 cut(s)	230
AvaI	CYCGRG	2 cut(s)	63, 296
AvaII	GGWCC	1 cut(s)	230
BanI	GGYRCC	2 cut(s)	214, 383
BanII	GRGCYC	1 cut(s)	70
BbvI	GCAGC	1 cut(s)	208
BceAI	ACGGC	1 cut(s)	62
BcoDI	GTCTC	2 cut(s)	293, 319
BfmI	CTRYAG	1 cut(s)	560
BfoI	RGCGCY	1 cut(s)	218
BfuAI	ACCTGC	1 cut(s)	334
BglI	GCCNNNNNGGC	1 cut(s)	101
BglII	AGATCT	1 cut(s)	456
BisI	GCNGC	5 cut(s)	15, 51, 222, 513, 555
BlsI	GCNGC	5 cut(s)	16, 52, 223, 514, 556
Bme18I	GGWCC	1 cut(s)	230
BmeT110I	CYCGRG	2 cut(s)	63, 296
BmgT120I	GGNCC	1 cut(s)	230
BmiI	GGNNCC	6 cut(s)	69, 109, 216, 231, 232, 385
BmsI	GCATC	1 cut(s)	558
Bsa29I	ATCGAT	1 cut(s)	42
BsaHI	GRCGYC	3 cut(s)	84, 215, 528
BsaJI	CCNNGG	1 cut(s)	96
BsaXI	ACNNNNNCTCC	2 cut(s)	52, 82
Bsc4I	CCNNNNNNNGG	3 cut(s)	57, 117, 302
Bse118I	RCCGGY	2 cut(s)	104, 217
Bse3DI	GCAATG	1 cut(s)	515
BseCI	ATCGAT	1 cut(s)	42
BseDI	CCNNGG	1 cut(s)	96
BseGI	GGATG	1 cut(s)	134
BseLI	CCNNNNNNNGG	3 cut(s)	57, 117, 302
BseMI	GCAATG	1 cut(s)	515
BseMII	CTCAG	1 cut(s)	254
BseRI	GAGGAG	1 cut(s)	34
BseXI	GCAGC	1 cut(s)	208
BseYI	CCCAGC	1 cut(s)	481
BsgI	GTGCAG	1 cut(s)	474
Bsh1285I	CGRYCG	1 cut(s)	42
BshFI	GGCC	2 cut(s)	50, 104
BshNI	GGYRCC	2 cut(s)	214, 383
BshVI	ATCGAT	1 cut(s)	42
BsiEI	CGRYCG	1 cut(s)	42
BsiHKCI	CYCGRG	2 cut(s)	63, 296
BsiSI	CCGG	3 cut(s)	105, 111, 218
BslFI	GGGAC	2 cut(s)	243, 463
BslI	CCNNNNNNNGG	3 cut(s)	57, 117, 302
BsmAI	GTCTC	2 cut(s)	293, 319
BsmBI	CGTCTC	2 cut(s)	293, 319
BsmFI	GGGAC	2 cut(s)	243, 463
BsnI	GGCC	2 cut(s)	50, 104
BsoBI	CYCGRG	2 cut(s)	63, 296
Bsp1286I	GDGCHC	1 cut(s)	70
Bsp143I	GATC	3 cut(s)	39, 122, 456
BspACI	CCGC	5 cut(s)	14, 51, 58, 151, 512
BspANI	GGCC	2 cut(s)	50, 104
BspCNI	CTCAG	1 cut(s)	253
BspDI	ATCGAT	1 cut(s)	42
BspLI	GGNNCC	6 cut(s)	69, 109, 216, 231, 232, 385
BspMI	ACCTGC	1 cut(s)	334
BspPI	GGATC	1 cut(s)	117
BspT107I	GGYRCC	2 cut(s)	214, 383
BsrDI	GCAATG	1 cut(s)	515
BsrFI	RCCGGY	2 cut(s)	104, 217
BssAI	RCCGGY	2 cut(s)	104, 217
BssECI	CCNNGG	1 cut(s)	96
BssMI	GATC	3 cut(s)	39, 122, 456
BssNI	GRCGYC	3 cut(s)	84, 215, 528
Bst6I	CTCTTC	1 cut(s)	151
BstACI	GRCGYC	3 cut(s)	84, 215, 528
BstAPI	GCANNNNNTGC	1 cut(s)	383
BstC8I	GCNNGC	4 cut(s)	106, 160, 219, 493
BstDEI	CTNAG	1 cut(s)	240
BstF5I	GGATG	1 cut(s)	134
BstH2I	RGCGCY	1 cut(s)	218
BstHHI	GCGC	1 cut(s)	217
BstKTI	GATC	3 cut(s)	42, 125, 459
BstMAI	GTCTC	2 cut(s)	293, 319
BstMBI	GATC	3 cut(s)	39, 122, 456
BstMCI	CGRYCG	1 cut(s)	42
BstMWI	GCNNNNNNNGC	8 cut(s)	11, 74, 101, 159, 164, 221, 251, 383
BstNSI	RCATGY	1 cut(s)	34
BstSFI	CTRYAG	1 cut(s)	560
BstV1I	GCAGC	1 cut(s)	208
BstX2I	RGATCY	1 cut(s)	456
BstYI	RGATCY	1 cut(s)	456
Bsu15I	ATCGAT	1 cut(s)	42
BsuRI	GGCC	2 cut(s)	50, 104
BsuTUI	ATCGAT	1 cut(s)	42
BtgZI	GCGATG	1 cut(s)	535
BtsCI	GGATG	1 cut(s)	134
BtsI	GCAGTG	1 cut(s)	53
BtsIMutI	CAGTG	1 cut(s)	53
BveI	ACCTGC	1 cut(s)	334
Cac8I	GCNNGC	4 cut(s)	106, 160, 219, 493
CaiI	CAGNNNCTG	2 cut(s)	349, 488
CfoI	GCGC	1 cut(s)	217
Cfr10I	RCCGGY	2 cut(s)	104, 217
Cfr13I	GGNCC	1 cut(s)	230
ClaI	ATCGAT	1 cut(s)	42
CseI	GACGC	2 cut(s)	73, 536
CviAII	CATG	1 cut(s)	31
DdeI	CTNAG	1 cut(s)	240
DinI	GGCGCC	1 cut(s)	216
DpnI	GATC	3 cut(s)	41, 124, 458
DpnII	GATC	3 cut(s)	39, 122, 456
EaeI	YGGCCR	2 cut(s)	48, 102
Eam1104I	CTCTTC	1 cut(s)	151
EarI	CTCTTC	1 cut(s)	151
Eco24I	GRGCYC	1 cut(s)	70
Eco47I	GGWCC	1 cut(s)	230
Eco57I	CTGAAG	1 cut(s)	371
Eco88I	CYCGRG	2 cut(s)	63, 296
EcoO109I	RGGNCCY	1 cut(s)	230
EcoT38I	GRGCYC	1 cut(s)	70
EgeI	GGCGCC	1 cut(s)	216
EheI	GGCGCC	1 cut(s)	216
Esp3I	CGTCTC	2 cut(s)	293, 319
FaeI	CATG	1 cut(s)	34
FaiI	YATR	6 cut(s)	32, 47, 270, 359, 462, 562
FaqI	GGGAC	2 cut(s)	243, 463
FatI	CATG	1 cut(s)	30
FauI	CCCGC	1 cut(s)	158
Fnu4HI	GCNGC	5 cut(s)	15, 51, 222, 513, 555
FokI	GGATG	1 cut(s)	121
FriOI	GRGCYC	1 cut(s)	70
Fsp4HI	GCNGC	5 cut(s)	15, 51, 222, 513, 555
GlaI	GCGC	1 cut(s)	216
GluI	GCNGC	5 cut(s)	15, 51, 222, 513, 555
GsaI	CCCAGC	1 cut(s)	485
HaeII	RGCGCY	1 cut(s)	218
HaeIII	GGCC	2 cut(s)	50, 104
HapII	CCGG	3 cut(s)	105, 111, 218
HgaI	GACGC	2 cut(s)	73, 536
HhaI	GCGC	1 cut(s)	217
Hin1I	GRCGYC	3 cut(s)	84, 215, 528
Hin1II	CATG	1 cut(s)	34
Hin6I	GCGC	1 cut(s)	215
HinP1I	GCGC	1 cut(s)	215
HinfI	GANTC	3 cut(s)	61, 186, 292
HpaII	CCGG	3 cut(s)	105, 111, 218
Hpy166II	GTNNAC	1 cut(s)	9
Hpy188I	TCNGA	4 cut(s)	291, 319, 336, 351
Hpy188III	TCNNGA	1 cut(s)	296
Hpy8I	GTNNAC	1 cut(s)	9
Hpy99I	CGWCG	3 cut(s)	40, 83, 89
HpyAV	CCTTC	1 cut(s)	323
HpyCH4V	TGCA	3 cut(s)	224, 491, 549
HpyF10VI	GCNNNNNNNGC	8 cut(s)	11, 74, 101, 159, 164, 221, 251, 383
HpyF3I	CTNAG	1 cut(s)	240
Hsp92I	GRCGYC	3 cut(s)	84, 215, 528
Hsp92II	CATG	1 cut(s)	34
HspAI	GCGC	1 cut(s)	215
KasI	GGCGCC	1 cut(s)	214
KflI	GGGWCCC	1 cut(s)	230
KroI	GCCGGC	2 cut(s)	104, 217
KroNI	GCCGGC	2 cut(s)	106, 219
Kzo9I	GATC	3 cut(s)	39, 122, 456
LmnI	GCTCC	4 cut(s)	21, 73, 113, 490
LpnPI	CCDG	9 cut(s)	118, 124, 227, 231, 261, 329, 491, 495, 501
Lsp1109I	GCAGC	1 cut(s)	208
LweI	GCATC	1 cut(s)	558
MalI	GATC	3 cut(s)	41, 124, 458
MboI	GATC	3 cut(s)	39, 122, 456
MboII	GAAGA	2 cut(s)	138, 364
MflI	RGATCY	1 cut(s)	456
MhlI	GDGCHC	1 cut(s)	70
MluCI	AATT	1 cut(s)	540
Mly113I	GGCGCC	1 cut(s)	215
MlyI	GAGTC	1 cut(s)	55
MnlI	CCTC	7 cut(s)	12, 106, 136, 154, 187, 275, 406
MroNI	GCCGGC	2 cut(s)	104, 217
MroXI	GAANNNNTTC	1 cut(s)	437
MseI	TTAA	1 cut(s)	405
MspI	CCGG	3 cut(s)	105, 111, 218
MwoI	GCNNNNNNNGC	8 cut(s)	11, 74, 101, 159, 164, 221, 251, 383
NaeI	GCCGGC	2 cut(s)	106, 219
NarI	GGCGCC	1 cut(s)	215
NdeII	GATC	3 cut(s)	39, 122, 456
NgoMIV	GCCGGC	2 cut(s)	104, 217
NlaIII	CATG	1 cut(s)	34
NlaIV	GGNNCC	6 cut(s)	69, 109, 216, 231, 232, 385
NspI	RCATGY	1 cut(s)	34
PdiI	GCCGGC	2 cut(s)	106, 219
PdmI	GAANNNNTTC	1 cut(s)	437
PfeI	GAWTC	2 cut(s)	186, 292
PkrI	GCNGC	5 cut(s)	16, 52, 223, 514, 556
Ple19I	CGATCG	1 cut(s)	42
PleI	GAGTC	1 cut(s)	55
PluTI	GGCGCC	1 cut(s)	218
PpsI	GAGTC	1 cut(s)	55
PpuMI	RGGWCCY	1 cut(s)	230
Psp5II	RGGWCCY	1 cut(s)	230
PspFI	CCCAGC	1 cut(s)	481
PspN4I	GGNNCC	6 cut(s)	69, 109, 216, 231, 232, 385
PspPI	GGNCC	1 cut(s)	230
PspPPI	RGGWCCY	1 cut(s)	230
PstNI	CAGNNNCTG	2 cut(s)	349, 488
PsuI	RGATCY	1 cut(s)	456
PvuI	CGATCG	1 cut(s)	42
SaqAI	TTAA	1 cut(s)	405
SatI	GCNGC	5 cut(s)	15, 51, 222, 513, 555
Sau3AI	GATC	3 cut(s)	39, 122, 456
Sau96I	GGNCC	1 cut(s)	230
SchI	GAGTC	1 cut(s)	55
SduI	GDGCHC	1 cut(s)	70
SetI	ASST	7 cut(s)	26, 256, 334, 348, 427, 487, 510
SfaNI	GCATC	1 cut(s)	558
SfcI	CTRYAG	1 cut(s)	560
SfoI	GGCGCC	1 cut(s)	216
SinI	GGWCC	1 cut(s)	230
Sse9I	AATT	1 cut(s)	540
SsiI	CCGC	5 cut(s)	14, 51, 58, 151, 512
SspDI	GGCGCC	1 cut(s)	214
TaqI	TCGA	3 cut(s)	42, 128, 184
TasI	AATT	1 cut(s)	540
TauI	GCSGC	3 cut(s)	17, 53, 515
TfiI	GAWTC	2 cut(s)	186, 292
Tru1I	TTAA	1 cut(s)	405
Tru9I	TTAA	1 cut(s)	405
TscAI	CASTG	1 cut(s)	60
TseI	GCWGC	2 cut(s)	221, 554
TspDTI	ATGAA	1 cut(s)	123
TspGWI	ACGGA	1 cut(s)	465
TspRI	CASTG	1 cut(s)	60
VpaK11BI	GGWCC	1 cut(s)	230
XceI	RCATGY	1 cut(s)	34
XmnI	GAANNNNTTC	1 cut(s)	437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.