Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0006616

Physical Location & Seq

Genomic Coordinates Forward (+)

16542410 .. 16544182

Gene Structure 1773 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g15230.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGCGTGGTGTGCGGCAAGGACCTACCACATGCCGGGGGTTGACATGGGGGCATTGCGCACCCGAGCTCCGTTAGCCGCCGGCGCGGGCTTTGCCTCGGTCGCTGGCTCCACTTTCTGGCGATCCTTGGCTTCATCGAAGCCCTCCTCTCGCTTCGCTTGCTTAGCCATTTCCACCGACGCTCGAATTAAGGAAGCTGTCCACACTGAAAAGGCTCCCGCTGCATTGGGACCGTATTCTCAGGCAATCAAAGCCAACAACTTTGTCTATGTGTCGGGTTGTCTTGGTCTGATTCCCGAGACCGGAAAGTTTGTGTCCGATGATGTTGAAGATCAGACAGAGCAGGTTCTAAAAAATATGGGGGAAATACTGAAAGCAAGCGGGGCCAGCTATTCCTCTGTGGTTAAAACGACTATTCTGTTGGCTGATTTGAAAGACTTCAAGAAAGTCAATGAAATCTATGCTAAATATTTTCCATCTCCAGCCCCAGCGCGTTCAACATTTCAGGTAGCGGCACTGCCACTGGATGCCAAGATTGAAATTGAGTGCATTGCAGCGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0006082 GO:0006520 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009081 GO:0009082 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0009987 GO:0010035 GO:0010038 GO:0016053 GO:0016787 GO:0019239 GO:0019752 GO:0031967 GO:0031975 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046686 GO:0050896 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribonuc_L-PSP

Protein Analysis

188

Amino Acids

19.88

Weight (kDa)

8.64

Isoelectric Point (pI)

49.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006616)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20390 AT3G20390
fragaria_vesca	FvH4_3g22680
malus_domestica	MD03G1200800.v1.1 MD11G1217800.v1.1 MD11G1218500.v1.1
prunus_persica	Prupe.4G213500_v2.0.a1 Prupe.4G213500_v2.0.a1
pyrus_communis	pycom03g15230 pycom11g19160 pycom11g19180 pycom11g19200
rosa_chinensis	RchiOBHm_Chr5g0039491
rosa_laevigata	RLG00000033922
rosa_multiflora	Rmu_sc0001204.1_g000001 Rmu_ssc0000400.1_g000035
rosa_roxburghii	Rroxscaffold_1G00040710 Rroxscaffold_1G00041660
rosa_rugosa	Rorug05G0179900 Rorug05G0180000
rosa_samantha	Rh5AG267100 Rh5BG271300 Rh5CG303900 Rh5DG278800
rosa_wichuraiana	Rw0G005700 Rw5G024960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	59
Acc36I	ACCTGC	1 cut(s)	334
AccB7I	CCANNNNNTGG	1 cut(s)	117
AccII	CGCG	2 cut(s)	86, 493
AciI	CCGC	6 cut(s)	14, 78, 86, 219, 381, 512
AclWI	GGATC	1 cut(s)	117
AfeI	AGCGCT	1 cut(s)	558
AfiI	CCNNNNNNNGG	3 cut(s)	34, 117, 302
AgsI	TTSAA	5 cut(s)	329, 433, 442, 498, 539
AluBI	AGCT	3 cut(s)	68, 197, 390
AluI	AGCT	3 cut(s)	68, 197, 390
Alw21I	GWGCWC	1 cut(s)	70
Alw26I	GTCTC	1 cut(s)	293
AlwI	GGATC	1 cut(s)	117
Ama87I	CYCGRG	2 cut(s)	63, 296
Aor51HI	AGCGCT	1 cut(s)	558
AoxI	GGCC	1 cut(s)	384
ApeKI	GCWGC	2 cut(s)	221, 554
Asp700I	GAANNNNTTC	1 cut(s)	437
AspLEI	GCGC	4 cut(s)	60, 86, 493, 559
AspS9I	GGNCC	3 cut(s)	21, 230, 384
AsuC2I	CCSGG	1 cut(s)	36
AvaI	CYCGRG	2 cut(s)	63, 296
AvaII	GGWCC	2 cut(s)	21, 230
BanII	GRGCYC	1 cut(s)	70
Bbv12I	GWGCWC	1 cut(s)	70
BbvI	GCAGC	1 cut(s)	208
BccI	CCATC	1 cut(s)	484
BcnI	CCSGG	1 cut(s)	36
BcoDI	GTCTC	1 cut(s)	293
BfoI	RGCGCY	1 cut(s)	560
BfuAI	ACCTGC	1 cut(s)	334
BisI	GCNGC	5 cut(s)	15, 78, 222, 513, 555
BlpI	GCTNAGC	1 cut(s)	163
BlsI	GCNGC	5 cut(s)	16, 79, 223, 514, 556
Bme1390I	CCNGG	1 cut(s)	36
Bme18I	GGWCC	2 cut(s)	21, 230
BmeT110I	CYCGRG	2 cut(s)	63, 296
BmgT120I	GGNCC	3 cut(s)	21, 230, 384
BmiI	GGNNCC	4 cut(s)	109, 216, 231, 385
BmrFI	CCNGG	1 cut(s)	36
BmsI	GCATC	1 cut(s)	517
BpmI	CTGGAG	1 cut(s)	465
Bpu1102I	GCTNAGC	1 cut(s)	163
BpuMI	CCSGG	1 cut(s)	36
BsaI	GGTCTC	1 cut(s)	293
BsaJI	CCNNGG	3 cut(s)	35, 96, 126
BsaWI	WCCGGW	1 cut(s)	302
BsaXI	ACNNNNNCTCC	2 cut(s)	52, 82
Bsc4I	CCNNNNNNNGG	3 cut(s)	34, 117, 302
Bse118I	RCCGGY	1 cut(s)	80
Bse1I	ACTGG	1 cut(s)	528
Bse3DI	GCAATG	2 cut(s)	53, 549
BseDI	CCNNGG	3 cut(s)	35, 96, 126
BseGI	GGATG	1 cut(s)	532
BseLI	CCNNNNNNNGG	3 cut(s)	34, 117, 302
BseMI	GCAATG	2 cut(s)	53, 549
BseMII	CTCAG	1 cut(s)	254
BseNI	ACTGG	1 cut(s)	528
BseRI	GAGGAG	1 cut(s)	136
BseXI	GCAGC	1 cut(s)	208
BseYI	CCCAGC	1 cut(s)	487
Bsh1236I	CGCG	2 cut(s)	86, 493
Bsh1285I	CGRYCG	1 cut(s)	102
BshFI	GGCC	1 cut(s)	386
BsiEI	CGRYCG	1 cut(s)	102
BsiHKAI	GWGCWC	1 cut(s)	70
BsiHKCI	CYCGRG	2 cut(s)	63, 296
BsiSI	CCGG	3 cut(s)	35, 81, 303
BslFI	GGGAC	1 cut(s)	243
BslI	CCNNNNNNNGG	3 cut(s)	34, 117, 302
BsmAI	GTCTC	1 cut(s)	293
BsmFI	GGGAC	1 cut(s)	243
BsnI	GGCC	1 cut(s)	386
Bso31I	GGTCTC	1 cut(s)	293
BsoBI	CYCGRG	2 cut(s)	63, 296
Bsp1286I	GDGCHC	1 cut(s)	70
Bsp143I	GATC	2 cut(s)	122, 331
Bsp1720I	GCTNAGC	1 cut(s)	163
BspACI	CCGC	6 cut(s)	14, 78, 86, 219, 381, 512
BspANI	GGCC	1 cut(s)	386
BspCNI	CTCAG	1 cut(s)	253
BspFNI	CGCG	2 cut(s)	86, 493
BspLI	GGNNCC	4 cut(s)	109, 216, 231, 385
BspMI	ACCTGC	1 cut(s)	334
BspPI	GGATC	1 cut(s)	117
BspTNI	GGTCTC	1 cut(s)	293
BsrDI	GCAATG	2 cut(s)	53, 549
BsrFI	RCCGGY	1 cut(s)	80
BsrI	ACTGG	1 cut(s)	528
BssAI	RCCGGY	1 cut(s)	80
BssECI	CCNNGG	3 cut(s)	35, 96, 126
BssMI	GATC	2 cut(s)	122, 331
BssT1I	CCWWGG	1 cut(s)	126
Bst4CI	ACNGT	1 cut(s)	234
BstC8I	GCNNGC	6 cut(s)	82, 88, 106, 160, 379, 388
BstDEI	CTNAG	2 cut(s)	163, 240
BstF5I	GGATG	1 cut(s)	532
BstFNI	CGCG	2 cut(s)	86, 493
BstH2I	RGCGCY	1 cut(s)	560
BstHHI	GCGC	4 cut(s)	60, 86, 493, 559
BstKTI	GATC	2 cut(s)	125, 334
BstMAI	GTCTC	1 cut(s)	293
BstMBI	GATC	2 cut(s)	122, 331
BstMCI	CGRYCG	1 cut(s)	102
BstNSI	RCATGY	1 cut(s)	34
BstSCI	CCNGG	1 cut(s)	34
BstUI	CGCG	2 cut(s)	86, 493
BstV1I	GCAGC	1 cut(s)	208
BsuRI	GGCC	1 cut(s)	386
BtsCI	GGATG	1 cut(s)	532
BtsI	GCAGTG	1 cut(s)	515
BtsIMutI	CAGTG	3 cut(s)	204, 515, 521
BveI	ACCTGC	1 cut(s)	334
Cac8I	GCNNGC	6 cut(s)	82, 88, 106, 160, 379, 388
CfoI	GCGC	4 cut(s)	60, 86, 493, 559
Cfr10I	RCCGGY	1 cut(s)	80
Cfr13I	GGNCC	3 cut(s)	21, 230, 384
CseI	GACGC	1 cut(s)	188
CviAII	CATG	2 cut(s)	31, 46
DdeI	CTNAG	2 cut(s)	163, 240
DpnI	GATC	2 cut(s)	124, 333
DpnII	GATC	2 cut(s)	122, 331
Ecl136II	GAGCTC	1 cut(s)	68
Eco130I	CCWWGG	1 cut(s)	126
Eco24I	GRGCYC	1 cut(s)	70
Eco31I	GGTCTC	1 cut(s)	293
Eco47I	GGWCC	2 cut(s)	21, 230
Eco47III	AGCGCT	1 cut(s)	558
Eco53kI	GAGCTC	1 cut(s)	68
Eco88I	CYCGRG	2 cut(s)	63, 296
EcoICRI	GAGCTC	1 cut(s)	68
EcoO109I	RGGNCCY	1 cut(s)	21
EcoT14I	CCWWGG	1 cut(s)	126
EcoT38I	GRGCYC	1 cut(s)	70
ErhI	CCWWGG	1 cut(s)	126
FaeI	CATG	2 cut(s)	34, 49
FaiI	YATR	5 cut(s)	32, 47, 270, 359, 462
FaqI	GGGAC	1 cut(s)	243
FatI	CATG	2 cut(s)	30, 45
FauI	CCCGC	3 cut(s)	79, 226, 374
Fnu4HI	GCNGC	5 cut(s)	15, 78, 222, 513, 555
FokI	GGATG	1 cut(s)	539
FriOI	GRGCYC	1 cut(s)	70
Fsp4HI	GCNGC	5 cut(s)	15, 78, 222, 513, 555
FspI	TGCGCA	1 cut(s)	59
GlaI	GCGC	4 cut(s)	59, 85, 492, 558
GluI	GCNGC	5 cut(s)	15, 78, 222, 513, 555
GsaI	CCCAGC	1 cut(s)	491
GsuI	CTGGAG	1 cut(s)	465
HaeII	RGCGCY	1 cut(s)	560
HaeIII	GGCC	1 cut(s)	386
HapII	CCGG	3 cut(s)	35, 81, 303
HgaI	GACGC	1 cut(s)	188
HhaI	GCGC	4 cut(s)	60, 86, 493, 559
Hin1II	CATG	2 cut(s)	34, 49
Hin6I	GCGC	4 cut(s)	58, 84, 491, 557
HinP1I	GCGC	4 cut(s)	58, 84, 491, 557
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
HinfI	GANTC	1 cut(s)	292
HpaII	CCGG	3 cut(s)	35, 81, 303
Hpy166II	GTNNAC	2 cut(s)	43, 202
Hpy188I	TCNGA	3 cut(s)	291, 319, 336
Hpy188III	TCNNGA	2 cut(s)	296, 442
Hpy8I	GTNNAC	2 cut(s)	43, 202
Hpy99I	CGWCG	1 cut(s)	182
HpyCH4III	ACNGT	1 cut(s)	234
HpyCH4V	TGCA	3 cut(s)	224, 549, 554
HpyF3I	CTNAG	2 cut(s)	163, 240
Hsp92II	CATG	2 cut(s)	34, 49
HspAI	GCGC	4 cut(s)	58, 84, 491, 557
KroI	GCCGGC	1 cut(s)	80
KroNI	GCCGGC	1 cut(s)	82
Kzo9I	GATC	2 cut(s)	122, 331
LmnI	GCTCC	3 cut(s)	73, 113, 220
Lsp1109I	GCAGC	1 cut(s)	208
LweI	GCATC	1 cut(s)	517
MalI	GATC	2 cut(s)	124, 333
MboI	GATC	2 cut(s)	122, 331
MboII	GAAGA	1 cut(s)	341
MhlI	GDGCHC	1 cut(s)	70
MluCI	AATT	2 cut(s)	186, 540
MnlI	CCTC	4 cut(s)	106, 154, 157, 406
MreI	CGCCGGCG	1 cut(s)	80
MroNI	GCCGGC	1 cut(s)	80
MroXI	GAANNNNTTC	1 cut(s)	437
MseI	TTAA	2 cut(s)	189, 405
MspA1I	CMGCKG	1 cut(s)	221
MspI	CCGG	3 cut(s)	35, 81, 303
MspR9I	CCNGG	1 cut(s)	36
MvnI	CGCG	2 cut(s)	86, 493
NaeI	GCCGGC	1 cut(s)	82
NciI	CCSGG	1 cut(s)	36
NdeII	GATC	2 cut(s)	122, 331
NgoMIV	GCCGGC	1 cut(s)	80
NlaIII	CATG	2 cut(s)	34, 49
NlaIV	GGNNCC	4 cut(s)	109, 216, 231, 385
NsbI	TGCGCA	1 cut(s)	59
NspI	RCATGY	1 cut(s)	34
PdiI	GCCGGC	1 cut(s)	82
PdmI	GAANNNNTTC	1 cut(s)	437
PfeI	GAWTC	1 cut(s)	292
PflMI	CCANNNNNTGG	1 cut(s)	117
PkrI	GCNGC	5 cut(s)	16, 79, 223, 514, 556
PpuMI	RGGWCCY	1 cut(s)	21
Psp124BI	GAGCTC	1 cut(s)	70
Psp5II	RGGWCCY	1 cut(s)	21
PspFI	CCCAGC	1 cut(s)	487
PspN4I	GGNNCC	4 cut(s)	109, 216, 231, 385
PspPI	GGNCC	3 cut(s)	21, 230, 384
PspPPI	RGGWCCY	1 cut(s)	21
SacI	GAGCTC	1 cut(s)	70
SaqAI	TTAA	2 cut(s)	189, 405
SatI	GCNGC	5 cut(s)	15, 78, 222, 513, 555
Sau3AI	GATC	2 cut(s)	122, 331
Sau96I	GGNCC	3 cut(s)	21, 230, 384
ScrFI	CCNGG	1 cut(s)	36
SduI	GDGCHC	1 cut(s)	70
SetI	ASST	6 cut(s)	26, 70, 199, 348, 392, 510
SfaNI	GCATC	1 cut(s)	517
SgrAI	CRCCGGYG	1 cut(s)	80
SinI	GGWCC	2 cut(s)	21, 230
Sse9I	AATT	2 cut(s)	186, 540
SsiI	CCGC	6 cut(s)	14, 78, 86, 219, 381, 512
SspI	AATATT	1 cut(s)	470
SstI	GAGCTC	1 cut(s)	70
StyD4I	CCNGG	1 cut(s)	34
StyI	CCWWGG	1 cut(s)	126
TaaI	ACNGT	1 cut(s)	234
TaqI	TCGA	2 cut(s)	137, 184
TaqII	GACCGA	1 cut(s)	88
TasI	AATT	2 cut(s)	186, 540
TauI	GCSGC	3 cut(s)	17, 80, 515
TfiI	GAWTC	1 cut(s)	292
Tru1I	TTAA	2 cut(s)	189, 405
Tru9I	TTAA	2 cut(s)	189, 405
TscAI	CASTG	3 cut(s)	211, 522, 528
TseI	GCWGC	2 cut(s)	221, 554
TspDTI	ATGAA	2 cut(s)	123, 468
TspGWI	ACGGA	1 cut(s)	60
TspRI	CASTG	3 cut(s)	211, 522, 528
Van91I	CCANNNNNTGG	1 cut(s)	117
VpaK11BI	GGWCC	2 cut(s)	21, 230
XceI	RCATGY	1 cut(s)	34
XmnI	GAANNNNTTC	1 cut(s)	437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.