Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006616

Physical Location & Seq

Genomic Coordinates Forward (+)

17223708 .. 17225403

Gene Structure 1696 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0180000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGCTATAACAATGATGGACGGTGTGAGAGATGGGAGCAGCCTGGTTGCAGACATGTTGGTGATCGATTTGAGCTACAACAAGGTTACTTTCAAGCAATTACCAGCTCTGCTTCAACATTCACGAACTGGATGCCAGTTTTGGACCGGAAACTGGAAGTTCATTGAAGACCTCACTGATGATGATTCAAGGATATTTTTTTATACAACAAAGCCAACTCCTACTATTAACGCCAAGTGTAAATACGCAGAATATGAGTGGAGATGGATTGGCACTGGTATCGCAGTTGCTTTACTTGGAAAATTGGTGACAGGAAAAGATATAGCTGTGAAGAGGCTTTCAGAATGTTCAGGGCAAGGAACATTAGAGTTTAAGAATGAACTGATACTTATATATGAGCTCCAACATACGAACCTTGTTCAGCTTTTTAAATTTTGTATTCATGGTGATGAGAGGATGTTGATATATGAGTACATGCCAAACAAAAGCTTGGACTACTTTTTATTTGATTCAACCAGAGCGCTGCTGCTAGATTGGAAGACGCGATTCAGTATAATAGAAGGAATCACTCAAGGAGTGCTGTACTTGCACAAGTACTCAAGAATGCAAGTGATTCATAGAGATTTGAAAGCTAGTAACATTCTACTTGATGAAAATATGAATCCCAAAATTTCTGATTTTGGTATGGCAAGAATCTTTACTCATAATGAACGGGGAAGCAAAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0006082 GO:0006520 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009081 GO:0009082 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0009987 GO:0010035 GO:0010038 GO:0016053 GO:0016787 GO:0019239 GO:0019752 GO:0031967 GO:0031975 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046686 GO:0050896 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribonuc_L-PSP

Protein Analysis

242

Amino Acids

28.01

Weight (kDa)

7.01

Isoelectric Point (pI)

31.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	98 - 237	2e-25	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	104 - 237	2.5e-26	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006616)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20390 AT3G20390
fragaria_vesca	FvH4_3g22680
malus_domestica	MD03G1200800.v1.1 MD11G1217800.v1.1 MD11G1218500.v1.1
prunus_persica	Prupe.4G213500_v2.0.a1 Prupe.4G213500_v2.0.a1
pyrus_communis	pycom03g15230 pycom11g19160 pycom11g19180 pycom11g19200
rosa_chinensis	RchiOBHm_Chr5g0039491
rosa_laevigata	RLG00000033922
rosa_multiflora	Rmu_sc0001204.1_g000001 Rmu_ssc0000400.1_g000035
rosa_roxburghii	Rroxscaffold_1G00040710 Rroxscaffold_1G00041660
rosa_rugosa	Rorug05G0179900 Rorug05G0180000
rosa_samantha	Rh5AG267100 Rh5BG271300 Rh5CG303900 Rh5DG278800
rosa_wichuraiana	Rw0G005700 Rw5G024960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	544
AcsI	RAATTY	2 cut(s)	431, 669
AfaI	GTAC	3 cut(s)	473, 584, 596
AfeI	AGCGCT	1 cut(s)	522
AfiI	CCNNNNNNNGG	1 cut(s)	153
AflIII	ACRYGT	1 cut(s)	54
AgsI	TTSAA	6 cut(s)	94, 116, 167, 189, 513, 628
AjnI	CCWGG	1 cut(s)	42
AluBI	AGCT	7 cut(s)	75, 107, 326, 400, 424, 489, 632
AluI	AGCT	7 cut(s)	75, 107, 326, 400, 424, 489, 632
Alw21I	GWGCWC	1 cut(s)	402
Aor51HI	AGCGCT	1 cut(s)	522
ApeKI	GCWGC	3 cut(s)	39, 523, 526
ApoI	RAATTY	2 cut(s)	431, 669
AspLEI	GCGC	1 cut(s)	523
AspS9I	GGNCC	1 cut(s)	144
AsuHPI	GGTGA	3 cut(s)	73, 319, 458
AvaII	GGWCC	1 cut(s)	144
BanII	GRGCYC	1 cut(s)	402
BbsI	GAAGAC	2 cut(s)	174, 545
Bbv12I	GWGCWC	1 cut(s)	402
BbvI	GCAGC	3 cut(s)	51, 510, 513
BccI	CCATC	3 cut(s)	10, 26, 258
BcgI	CGANNNNNNTGC	4 cut(s)	114, 148, 262, 296
BciT130I	CCWGG	1 cut(s)	44
BfaI	CTAG	2 cut(s)	530, 633
BfoI	RGCGCY	1 cut(s)	524
BisI	GCNGC	3 cut(s)	40, 524, 527
BlsI	GCNGC	3 cut(s)	41, 525, 528
BmcAI	AGTACT	1 cut(s)	596
Bme1390I	CCNGG	1 cut(s)	44
Bme18I	GGWCC	1 cut(s)	144
BmgT120I	GGNCC	1 cut(s)	144
BmrFI	CCNGG	1 cut(s)	44
BmsI	GCATC	1 cut(s)	122
BpiI	GAAGAC	2 cut(s)	174, 545
BpuEI	CTTGAG	2 cut(s)	555, 583
Bsa29I	ATCGAT	1 cut(s)	66
BsaWI	WCCGGW	1 cut(s)	146
Bsc4I	CCNNNNNNNGG	1 cut(s)	153
Bse1I	ACTGG	4 cut(s)	133, 136, 158, 280
BseBI	CCWGG	1 cut(s)	44
BseCI	ATCGAT	1 cut(s)	66
BseGI	GGATG	2 cut(s)	137, 462
BseLI	CCNNNNNNNGG	1 cut(s)	153
BseNI	ACTGG	4 cut(s)	133, 136, 158, 280
BseXI	GCAGC	3 cut(s)	51, 510, 513
Bsh1236I	CGCG	1 cut(s)	544
BshVI	ATCGAT	1 cut(s)	66
BsiHKAI	GWGCWC	1 cut(s)	402
BsiSI	CCGG	1 cut(s)	147
BslI	CCNNNNNNNGG	1 cut(s)	153
BsmI	GAATGC	1 cut(s)	609
Bsp1286I	GDGCHC	1 cut(s)	402
Bsp143I	GATC	1 cut(s)	63
BspDI	ATCGAT	1 cut(s)	66
BspFNI	CGCG	1 cut(s)	544
BsrI	ACTGG	4 cut(s)	133, 136, 158, 280
BssMI	GATC	1 cut(s)	63
Bst2UI	CCWGG	1 cut(s)	44
Bst4CI	ACNGT	1 cut(s)	23
Bst6I	CTCTTC	1 cut(s)	326
BstF5I	GGATG	2 cut(s)	137, 462
BstFNI	CGCG	1 cut(s)	544
BstH2I	RGCGCY	1 cut(s)	524
BstHHI	GCGC	1 cut(s)	523
BstKTI	GATC	1 cut(s)	66
BstMBI	GATC	1 cut(s)	63
BstMWI	GCNNNNNNNGC	1 cut(s)	586
BstNI	CCWGG	1 cut(s)	44
BstNSI	RCATGY	2 cut(s)	58, 478
BstSCI	CCNGG	1 cut(s)	42
BstUI	CGCG	1 cut(s)	544
BstV1I	GCAGC	3 cut(s)	51, 510, 513
BstV2I	GAAGAC	2 cut(s)	174, 545
Bsu15I	ATCGAT	1 cut(s)	66
BsuTUI	ATCGAT	1 cut(s)	66
BtsCI	GGATG	2 cut(s)	137, 462
BtsIMutI	CAGTG	2 cut(s)	174, 273
CfoI	GCGC	1 cut(s)	523
Cfr13I	GGNCC	1 cut(s)	144
ClaI	ATCGAT	1 cut(s)	66
CseI	GACGC	1 cut(s)	550
Csp6I	GTAC	3 cut(s)	472, 583, 595
CviAII	CATG	3 cut(s)	55, 443, 475
CviQI	GTAC	3 cut(s)	472, 583, 595
DpnI	GATC	1 cut(s)	65
DpnII	GATC	1 cut(s)	63
DraI	TTTAAA	1 cut(s)	430
Eam1104I	CTCTTC	1 cut(s)	326
EarI	CTCTTC	1 cut(s)	326
Ecl136II	GAGCTC	1 cut(s)	400
Eco24I	GRGCYC	1 cut(s)	402
Eco47I	GGWCC	1 cut(s)	144
Eco47III	AGCGCT	1 cut(s)	522
Eco53kI	GAGCTC	1 cut(s)	400
EcoICRI	GAGCTC	1 cut(s)	400
EcoRII	CCWGG	1 cut(s)	42
EcoT38I	GRGCYC	1 cut(s)	402
FaeI	CATG	3 cut(s)	58, 446, 478
FatI	CATG	3 cut(s)	54, 442, 474
Fnu4HI	GCNGC	3 cut(s)	40, 524, 527
FokI	GGATG	2 cut(s)	144, 469
FriOI	GRGCYC	1 cut(s)	402
Fsp4HI	GCNGC	3 cut(s)	40, 524, 527
FspBI	CTAG	2 cut(s)	530, 633
GlaI	GCGC	1 cut(s)	522
GluI	GCNGC	3 cut(s)	40, 524, 527
HaeII	RGCGCY	1 cut(s)	524
HapII	CCGG	1 cut(s)	147
HgaI	GACGC	1 cut(s)	550
HhaI	GCGC	1 cut(s)	523
Hin1II	CATG	3 cut(s)	58, 446, 478
Hin6I	GCGC	1 cut(s)	521
HinP1I	GCGC	1 cut(s)	521
HindIII	AAGCTT	1 cut(s)	487
HinfI	GANTC	7 cut(s)	185, 509, 546, 564, 613, 661, 693
HpaII	CCGG	1 cut(s)	147
HphI	GGTGA	3 cut(s)	73, 319, 458
Hpy188I	TCNGA	2 cut(s)	343, 676
Hpy188III	TCNNGA	2 cut(s)	123, 600
HpyAV	CCTTC	1 cut(s)	554
HpyCH4III	ACNGT	1 cut(s)	23
HpyCH4V	TGCA	3 cut(s)	50, 589, 607
HpyF10VI	GCNNNNNNNGC	1 cut(s)	586
Hsp92II	CATG	3 cut(s)	58, 446, 478
HspAI	GCGC	1 cut(s)	521
Kzo9I	GATC	1 cut(s)	63
LmnI	GCTCC	2 cut(s)	36, 405
Lsp1109I	GCAGC	3 cut(s)	51, 510, 513
LweI	GCATC	1 cut(s)	122
MaeI	CTAG	2 cut(s)	530, 633
MaeIII	GTNAC	3 cut(s)	85, 307, 635
MalI	GATC	1 cut(s)	65
MboI	GATC	1 cut(s)	63
MboII	GAAGA	3 cut(s)	179, 343, 550
MhlI	GDGCHC	1 cut(s)	402
MluCI	AATT	4 cut(s)	98, 302, 431, 669
MmeI	TCCRAC	1 cut(s)	427
MnlI	CCTC	3 cut(s)	182, 327, 447
MseI	TTAA	3 cut(s)	228, 372, 429
MslI	CAYNNNNRTG	2 cut(s)	59, 447
MspI	CCGG	1 cut(s)	147
MspR9I	CCNGG	1 cut(s)	44
Mva1269I	GAATGC	1 cut(s)	609
MvaI	CCWGG	1 cut(s)	44
MvnI	CGCG	1 cut(s)	544
MwoI	GCNNNNNNNGC	1 cut(s)	586
NdeII	GATC	1 cut(s)	63
NlaIII	CATG	3 cut(s)	58, 446, 478
NmuCI	GTSAC	1 cut(s)	307
NspI	RCATGY	2 cut(s)	58, 478
PciI	ACATGT	1 cut(s)	54
PctI	GAATGC	1 cut(s)	609
PfeI	GAWTC	7 cut(s)	185, 509, 546, 564, 613, 661, 693
PkrI	GCNGC	3 cut(s)	41, 525, 528
PscI	ACATGT	1 cut(s)	54
Psp124BI	GAGCTC	1 cut(s)	402
Psp6I	CCWGG	1 cut(s)	42
PspGI	CCWGG	1 cut(s)	42
PspPI	GGNCC	1 cut(s)	144
RsaI	GTAC	3 cut(s)	473, 584, 596
RsaNI	GTAC	3 cut(s)	472, 583, 595
RseI	CAYNNNNRTG	2 cut(s)	59, 447
SacI	GAGCTC	1 cut(s)	402
SaqAI	TTAA	3 cut(s)	228, 372, 429
SatI	GCNGC	3 cut(s)	40, 524, 527
Sau3AI	GATC	1 cut(s)	63
Sau96I	GGNCC	1 cut(s)	144
ScaI	AGTACT	1 cut(s)	596
ScrFI	CCNGG	1 cut(s)	44
SduI	GDGCHC	1 cut(s)	402
SfaNI	GCATC	1 cut(s)	122
SinI	GGWCC	1 cut(s)	144
SmiMI	CAYNNNNRTG	2 cut(s)	59, 447
SmlI	CTYRAG	2 cut(s)	570, 598
SmoI	CTYRAG	2 cut(s)	570, 598
Sse9I	AATT	4 cut(s)	98, 302, 431, 669
SspMI	CTAG	2 cut(s)	530, 633
SstI	GAGCTC	1 cut(s)	402
StyD4I	CCNGG	1 cut(s)	42
TaaI	ACNGT	1 cut(s)	23
TaqI	TCGA	1 cut(s)	66
TasI	AATT	4 cut(s)	98, 302, 431, 669
TatI	WGTACW	3 cut(s)	471, 582, 594
TfiI	GAWTC	7 cut(s)	185, 509, 546, 564, 613, 661, 693
Tru1I	TTAA	3 cut(s)	228, 372, 429
Tru9I	TTAA	3 cut(s)	228, 372, 429
TscAI	CASTG	2 cut(s)	181, 280
TseFI	GTSAC	1 cut(s)	307
TseI	GCWGC	3 cut(s)	39, 523, 526
Tsp45I	GTSAC	1 cut(s)	307
TspDTI	ATGAA	7 cut(s)	151, 393, 431, 605, 666, 674, 723
TspRI	CASTG	2 cut(s)	181, 280
VpaK11BI	GGWCC	1 cut(s)	144
XapI	RAATTY	2 cut(s)	431, 669
XceI	RCATGY	2 cut(s)	58, 478
XspI	CTAG	2 cut(s)	530, 633
ZrmI	AGTACT	1 cut(s)	596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.