Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0006616

Physical Location & Seq

Genomic Coordinates Forward (+)

31832411 .. 31834763

Gene Structure 2353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1218500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGTTTGGTGTGCGGTGAGGAGCTTTCACATTCCGGCGGTCGACATGGGCGCATTGCGCACCCGTGCTCCGTTAGCTGCCGTCGCGGGCTTTTCCTCGGTAGCTGGCTCCACTTTCTTTCGATCTTTGGCTTCATCGAAGCCCTCCTCTCGCTTCGCTTGCTCAGCCATTTCCACCGACGCTCGAATTAAGGAAGCTGTTCACACAGACAAGGCTCCGGCTGCATTGGGACCGTATTCTCAGGCAATCAAAGTCGACAACTTTGTCCATGTGTCCGGTTGTCTTGGTCTGATTCCAGAGACAGGGAAGTTTGTGTCGGATAATGTTGTAGATCAGACAGAGCAGGTTCTGAAAAATATGGGGGAAATACTGAAAGCAAGCGGGGCCAGCTATTCCTCTGTGGTTGAAACAACTATTCTGTTGGCGGATTGGAATGACTTCAAGAAAATCAATGAAATCTATGCTAAATATTTGCCATCTCCGGCCCCAGCACGTTCAATATTTCAGATAGCAGCTCTGCCATTGGATGCTAAGATTGAAACTGGGTGCATTGCGGCATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0006082 GO:0006520 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009081 GO:0009082 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0009987 GO:0010035 GO:0010038 GO:0016053 GO:0016787 GO:0019239 GO:0019752 GO:0031967 GO:0031975 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046686 GO:0050896 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribonuc_L-PSP

Protein Analysis

188

Amino Acids

19.84

Weight (kDa)

8.35

Isoelectric Point (pI)

42.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonuc_L-PSP	PF01042	70 - 186	8.8e-37	Endoribonuclease L-PSP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006616)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20390 AT3G20390
fragaria_vesca	FvH4_3g22680
malus_domestica	MD03G1200800.v1.1 MD11G1217800.v1.1 MD11G1218500.v1.1
prunus_persica	Prupe.4G213500_v2.0.a1 Prupe.4G213500_v2.0.a1
pyrus_communis	pycom03g15230 pycom11g19160 pycom11g19180 pycom11g19200
rosa_chinensis	RchiOBHm_Chr5g0039491
rosa_laevigata	RLG00000033922
rosa_multiflora	Rmu_sc0001204.1_g000001 Rmu_ssc0000400.1_g000035
rosa_roxburghii	Rroxscaffold_1G00040710 Rroxscaffold_1G00041660
rosa_rugosa	Rorug05G0179900 Rorug05G0180000
rosa_samantha	Rh5AG267100 Rh5BG271300 Rh5CG303900 Rh5DG278800
rosa_wichuraiana	Rw0G005700 Rw5G024960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	263
Acc16I	TGCGCA	1 cut(s)	59
Acc36I	ACCTGC	1 cut(s)	334
AccI	GTMKAC	2 cut(s)	42, 255
AccII	CGCG	1 cut(s)	86
AciI	CCGC	6 cut(s)	14, 38, 86, 381, 425, 554
AfiI	CCNNNNNNNGG	1 cut(s)	302
AgsI	TTSAA	4 cut(s)	407, 442, 498, 539
AluBI	AGCT	6 cut(s)	24, 77, 104, 197, 390, 515
AluI	AGCT	6 cut(s)	24, 77, 104, 197, 390, 515
Alw21I	GWGCWC	1 cut(s)	70
Alw26I	GTCTC	1 cut(s)	293
AlwNI	CAGNNNCTG	1 cut(s)	349
AoxI	GGCC	2 cut(s)	384, 483
ApeKI	GCWGC	3 cut(s)	77, 221, 512
Asp700I	GAANNNNTTC	2 cut(s)	198, 437
AspLEI	GCGC	2 cut(s)	53, 60
AspS9I	GGNCC	3 cut(s)	230, 384, 484
AsuHPI	GGTGA	1 cut(s)	28
AvaII	GGWCC	1 cut(s)	230
Bbv12I	GWGCWC	1 cut(s)	70
BbvI	GCAGC	3 cut(s)	64, 208, 524
BccI	CCATC	1 cut(s)	484
BceAI	ACGGC	1 cut(s)	65
BcoDI	GTCTC	1 cut(s)	293
BfuAI	ACCTGC	1 cut(s)	334
BisI	GCNGC	4 cut(s)	78, 222, 513, 555
BlpI	GCTNAGC	1 cut(s)	163
BlsI	GCNGC	4 cut(s)	79, 223, 514, 556
Bme18I	GGWCC	1 cut(s)	230
BmgT120I	GGNCC	3 cut(s)	230, 384, 484
BmiI	GGNNCC	5 cut(s)	109, 216, 231, 385, 486
BmrI	ACTGGG	1 cut(s)	552
BmsI	GCATC	1 cut(s)	517
BmuI	ACTGGG	1 cut(s)	552
Bpu1102I	GCTNAGC	1 cut(s)	163
BsaJI	CCNNGG	1 cut(s)	96
BsaWI	WCCGGW	1 cut(s)	275
BsaXI	ACNNNNNCTCC	2 cut(s)	52, 82
Bsc4I	CCNNNNNNNGG	1 cut(s)	302
Bse1I	ACTGG	1 cut(s)	547
Bse3DI	GCAATG	2 cut(s)	53, 549
BseDI	CCNNGG	1 cut(s)	96
BseGI	GGATG	1 cut(s)	532
BseLI	CCNNNNNNNGG	1 cut(s)	302
BseMI	GCAATG	2 cut(s)	53, 549
BseMII	CTCAG	2 cut(s)	177, 254
BseNI	ACTGG	1 cut(s)	547
BseRI	GAGGAG	2 cut(s)	34, 136
BseXI	GCAGC	3 cut(s)	64, 208, 524
BseYI	CCCAGC	1 cut(s)	487
Bsh1236I	CGCG	1 cut(s)	86
Bsh1285I	CGRYCG	1 cut(s)	42
BshFI	GGCC	2 cut(s)	386, 485
BsiEI	CGRYCG	1 cut(s)	42
BsiHKAI	GWGCWC	1 cut(s)	70
BsiSI	CCGG	4 cut(s)	35, 218, 276, 482
BslFI	GGGAC	1 cut(s)	243
BslI	CCNNNNNNNGG	1 cut(s)	302
BsmAI	GTCTC	1 cut(s)	293
BsmFI	GGGAC	1 cut(s)	243
BsnI	GGCC	2 cut(s)	386, 485
Bsp1286I	GDGCHC	1 cut(s)	70
Bsp143I	GATC	2 cut(s)	122, 331
Bsp1720I	GCTNAGC	1 cut(s)	163
BspACI	CCGC	6 cut(s)	14, 38, 86, 381, 425, 554
BspANI	GGCC	2 cut(s)	386, 485
BspCNI	CTCAG	2 cut(s)	176, 253
BspFNI	CGCG	1 cut(s)	86
BspLI	GGNNCC	5 cut(s)	109, 216, 231, 385, 486
BspMI	ACCTGC	1 cut(s)	334
BsrDI	GCAATG	2 cut(s)	53, 549
BsrI	ACTGG	1 cut(s)	547
BssECI	CCNNGG	1 cut(s)	96
BssMI	GATC	2 cut(s)	122, 331
Bst4CI	ACNGT	1 cut(s)	234
BstC8I	GCNNGC	5 cut(s)	88, 106, 160, 379, 388
BstDEI	CTNAG	3 cut(s)	163, 240, 531
BstF5I	GGATG	1 cut(s)	532
BstFNI	CGCG	1 cut(s)	86
BstHHI	GCGC	2 cut(s)	53, 60
BstKTI	GATC	2 cut(s)	125, 334
BstMAI	GTCTC	1 cut(s)	293
BstMBI	GATC	2 cut(s)	122, 331
BstMCI	CGRYCG	1 cut(s)	42
BstMWI	GCNNNNNNNGC	8 cut(s)	57, 74, 83, 159, 164, 221, 383, 387
BstUI	CGCG	1 cut(s)	86
BstV1I	GCAGC	3 cut(s)	64, 208, 524
BsuRI	GGCC	2 cut(s)	386, 485
BtsCI	GGATG	1 cut(s)	532
BveI	ACCTGC	1 cut(s)	334
Cac8I	GCNNGC	5 cut(s)	88, 106, 160, 379, 388
CaiI	CAGNNNCTG	1 cut(s)	349
CfoI	GCGC	2 cut(s)	53, 60
Cfr13I	GGNCC	3 cut(s)	230, 384, 484
CseI	GACGC	1 cut(s)	188
CviAII	CATG	2 cut(s)	46, 269
DdeI	CTNAG	3 cut(s)	163, 240, 531
DpnI	GATC	2 cut(s)	124, 333
DpnII	GATC	2 cut(s)	122, 331
DrdI	GACNNNNNNGTC	1 cut(s)	263
DseDI	GACNNNNNNGTC	1 cut(s)	263
EciI	GGCGGA	1 cut(s)	440
Eco47I	GGWCC	1 cut(s)	230
FaeI	CATG	2 cut(s)	49, 272
FaiI	YATR	4 cut(s)	47, 270, 359, 462
FaqI	GGGAC	1 cut(s)	243
FatI	CATG	2 cut(s)	45, 268
FauI	CCCGC	2 cut(s)	79, 374
FblI	GTMKAC	2 cut(s)	42, 255
Fnu4HI	GCNGC	4 cut(s)	78, 222, 513, 555
FokI	GGATG	1 cut(s)	539
Fsp4HI	GCNGC	4 cut(s)	78, 222, 513, 555
FspI	TGCGCA	1 cut(s)	59
GlaI	GCGC	2 cut(s)	52, 59
GluI	GCNGC	4 cut(s)	78, 222, 513, 555
GsaI	CCCAGC	1 cut(s)	491
HaeIII	GGCC	2 cut(s)	386, 485
HapII	CCGG	4 cut(s)	35, 218, 276, 482
HgaI	GACGC	1 cut(s)	188
HhaI	GCGC	2 cut(s)	53, 60
Hin1II	CATG	2 cut(s)	49, 272
Hin6I	GCGC	2 cut(s)	51, 58
HinP1I	GCGC	2 cut(s)	51, 58
HincII	GTYRAC	2 cut(s)	43, 256
HindII	GTYRAC	2 cut(s)	43, 256
HinfI	GANTC	1 cut(s)	292
HpaII	CCGG	4 cut(s)	35, 218, 276, 482
HphI	GGTGA	1 cut(s)	28
Hpy166II	GTNNAC	3 cut(s)	43, 202, 256
Hpy188I	TCNGA	5 cut(s)	291, 319, 336, 351, 507
Hpy188III	TCNNGA	2 cut(s)	296, 442
Hpy8I	GTNNAC	3 cut(s)	43, 202, 256
Hpy99I	CGWCG	2 cut(s)	86, 182
HpyCH4III	ACNGT	1 cut(s)	234
HpyCH4IV	ACGT	1 cut(s)	493
HpyCH4V	TGCA	2 cut(s)	224, 549
HpyF10VI	GCNNNNNNNGC	8 cut(s)	57, 74, 83, 159, 164, 221, 383, 387
HpyF3I	CTNAG	3 cut(s)	163, 240, 531
HpySE526I	ACGT	1 cut(s)	493
Hsp92II	CATG	2 cut(s)	49, 272
HspAI	GCGC	2 cut(s)	51, 58
Kzo9I	GATC	2 cut(s)	122, 331
LmnI	GCTCC	4 cut(s)	21, 73, 113, 220
Lsp1109I	GCAGC	3 cut(s)	64, 208, 524
LweI	GCATC	1 cut(s)	517
MaeII	ACGT	1 cut(s)	493
MalI	GATC	2 cut(s)	124, 333
MboI	GATC	2 cut(s)	122, 331
MhlI	GDGCHC	1 cut(s)	70
MluCI	AATT	1 cut(s)	186
MmeI	TCCRAC	1 cut(s)	297
MnlI	CCTC	5 cut(s)	12, 106, 154, 157, 406
MroXI	GAANNNNTTC	2 cut(s)	198, 437
MseI	TTAA	1 cut(s)	189
MspI	CCGG	4 cut(s)	35, 218, 276, 482
MvnI	CGCG	1 cut(s)	86
MwoI	GCNNNNNNNGC	8 cut(s)	57, 74, 83, 159, 164, 221, 383, 387
NdeII	GATC	2 cut(s)	122, 331
NlaIII	CATG	2 cut(s)	49, 272
NlaIV	GGNNCC	5 cut(s)	109, 216, 231, 385, 486
NsbI	TGCGCA	1 cut(s)	59
PdmI	GAANNNNTTC	2 cut(s)	198, 437
PfeI	GAWTC	1 cut(s)	292
PkrI	GCNGC	4 cut(s)	79, 223, 514, 556
PspFI	CCCAGC	1 cut(s)	487
PspN4I	GGNNCC	5 cut(s)	109, 216, 231, 385, 486
PspPI	GGNCC	3 cut(s)	230, 384, 484
PstNI	CAGNNNCTG	1 cut(s)	349
SalI	GTCGAC	2 cut(s)	41, 254
SaqAI	TTAA	1 cut(s)	189
SatI	GCNGC	4 cut(s)	78, 222, 513, 555
Sau3AI	GATC	2 cut(s)	122, 331
Sau96I	GGNCC	3 cut(s)	230, 384, 484
SduI	GDGCHC	1 cut(s)	70
SetI	ASST	8 cut(s)	26, 79, 106, 199, 348, 392, 496, 517
SfaNI	GCATC	1 cut(s)	517
SinI	GGWCC	1 cut(s)	230
Sse9I	AATT	1 cut(s)	186
SsiI	CCGC	6 cut(s)	14, 38, 86, 381, 425, 554
SspI	AATATT	2 cut(s)	470, 501
TaaI	ACNGT	1 cut(s)	234
TaiI	ACGT	1 cut(s)	496
TaqI	TCGA	5 cut(s)	42, 121, 137, 184, 255
TasI	AATT	1 cut(s)	186
TauI	GCSGC	1 cut(s)	557
TfiI	GAWTC	1 cut(s)	292
Tru1I	TTAA	1 cut(s)	189
Tru9I	TTAA	1 cut(s)	189
TseI	GCWGC	3 cut(s)	77, 221, 512
TspDTI	ATGAA	2 cut(s)	123, 468
TspGWI	ACGGA	1 cut(s)	60
VpaK11BI	GGWCC	1 cut(s)	230
XmiI	GTMKAC	2 cut(s)	42, 255
XmnI	GAANNNNTTC	2 cut(s)	198, 437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.