Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0006616

Physical Location & Seq

Genomic Coordinates Forward (+)

21477005 .. 21479575

Gene Structure 2571 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g19200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGTTAGAGCCAACCAGATTTGGCCCAAAATAAAATGGCAACGAGTCCAACAGAGACAGACTCCCAGAGAGAGAGAGATGGCGTGGTGTGCGGCGAGGAGCTTTCACATGCCGGCGGTCGACATGGGCGCATTGCGCACCCGTGCTCCGTTAGCCGCCGTCGCGGGCTTTGCCTCGGTAGCTGGCTCCAGTGTCTGGCGATCTTTGGCTTCATCGAAGCCCTCCTCTCGCTTCGCTTGCTCAGCCATTTCCACCGACGCTCGAATTAAGGAAGCTGTTCACACAGACAAGGCTCCGGCTGCATTGGGCCAGTATTCTCAGGCAATCAAAGTCGACAACTTTGTCCATGTGTCGGGTTGTCTTGGTCTGATTCCTGAGGGAAGTTTGTGTCGGATAATGTTGCCGCTGATAGATCAGACAGAGCAGGTTCTGAAAAATATGGGGGAAATACTGAAAGCAAGGGGGGCCAGCTATTCCTCTGTGGTTGAAACGACTATTCTGTTGGCTGATTGGAACAACTTCAAGAAAGTCAATGAAATCTATGCTAAATATTTTCCATCTCCAGCCCCAGCACGTTCAATATTTCAGATAGCAGCACTGCCATTGGATGCCAAGATTGAAACTGGGTGCATTGCCGCACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0006082 GO:0006520 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009081 GO:0009082 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0009987 GO:0010035 GO:0010038 GO:0016053 GO:0016787 GO:0019239 GO:0019752 GO:0031967 GO:0031975 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046686 GO:0050896 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribonuc_L-PSP

Protein Analysis

215

Amino Acids

23.37

Weight (kDa)

9.64

Isoelectric Point (pI)

40.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonuc_L-PSP	PF01042	96 - 213	2e-31	Endoribonuclease L-PSP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006616)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20390 AT3G20390
fragaria_vesca	FvH4_3g22680
malus_domestica	MD03G1200800.v1.1 MD11G1217800.v1.1 MD11G1218500.v1.1
prunus_persica	Prupe.4G213500_v2.0.a1 Prupe.4G213500_v2.0.a1
pyrus_communis	pycom03g15230 pycom11g19160 pycom11g19180 pycom11g19200
rosa_chinensis	RchiOBHm_Chr5g0039491
rosa_laevigata	RLG00000033922
rosa_multiflora	Rmu_sc0001204.1_g000001 Rmu_ssc0000400.1_g000035
rosa_roxburghii	Rroxscaffold_1G00040710 Rroxscaffold_1G00041660
rosa_rugosa	Rorug05G0179900 Rorug05G0180000
rosa_samantha	Rh5AG267100 Rh5BG271300 Rh5CG303900 Rh5DG278800
rosa_wichuraiana	Rw0G005700 Rw5G024960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	341
Acc16I	TGCGCA	1 cut(s)	137
Acc36I	ACCTGC	1 cut(s)	415
AccB7I	CCANNNNNTGG	1 cut(s)	195
AccI	GTMKAC	2 cut(s)	120, 333
AccII	CGCG	1 cut(s)	164
AciI	CCGC	6 cut(s)	92, 116, 156, 164, 404, 636
AfiI	CCNNNNNNNGG	2 cut(s)	195, 352
AgsI	TTSAA	4 cut(s)	488, 523, 579, 620
AluBI	AGCT	4 cut(s)	102, 182, 275, 471
AluI	AGCT	4 cut(s)	102, 182, 275, 471
Alw21I	GWGCWC	1 cut(s)	148
Alw26I	GTCTC	1 cut(s)	49
AlwNI	CAGNNNCTG	2 cut(s)	195, 430
AoxI	GGCC	3 cut(s)	23, 307, 465
ApeKI	GCWGC	2 cut(s)	299, 593
Asp700I	GAANNNNTTC	2 cut(s)	276, 518
AspLEI	GCGC	2 cut(s)	131, 138
AspS9I	GGNCC	3 cut(s)	24, 307, 465
AxyI	CCTNAGG	1 cut(s)	375
Bbv12I	GWGCWC	1 cut(s)	148
BbvI	GCAGC	2 cut(s)	286, 605
BccI	CCATC	2 cut(s)	73, 565
BceAI	ACGGC	1 cut(s)	143
BcoDI	GTCTC	1 cut(s)	49
BfuAI	ACCTGC	1 cut(s)	415
BisI	GCNGC	6 cut(s)	93, 156, 300, 404, 594, 636
BlpI	GCTNAGC	1 cut(s)	241
BlsI	GCNGC	6 cut(s)	94, 157, 301, 405, 595, 637
BmgT120I	GGNCC	3 cut(s)	24, 307, 465
BmiI	GGNNCC	3 cut(s)	187, 294, 466
BmrI	ACTGGG	1 cut(s)	633
BmsI	GCATC	1 cut(s)	598
BmuI	ACTGGG	1 cut(s)	633
BplI	GAGNNNNNCTC	2 cut(s)	46, 78
BpmI	CTGGAG	2 cut(s)	172, 546
Bpu1102I	GCTNAGC	1 cut(s)	241
BsaJI	CCNNGG	1 cut(s)	174
BsaXI	ACNNNNNCTCC	2 cut(s)	130, 160
Bsc4I	CCNNNNNNNGG	2 cut(s)	195, 352
Bse118I	RCCGGY	1 cut(s)	112
Bse1I	ACTGG	3 cut(s)	189, 310, 628
Bse21I	CCTNAGG	1 cut(s)	375
Bse3DI	GCAATG	2 cut(s)	131, 630
BseDI	CCNNGG	1 cut(s)	174
BseGI	GGATG	1 cut(s)	613
BseLI	CCNNNNNNNGG	2 cut(s)	195, 352
BseMI	GCAATG	2 cut(s)	131, 630
BseMII	CTCAG	3 cut(s)	255, 332, 366
BseNI	ACTGG	3 cut(s)	189, 310, 628
BseRI	GAGGAG	2 cut(s)	112, 214
BseXI	GCAGC	2 cut(s)	286, 605
BseYI	CCCAGC	1 cut(s)	568
Bsh1236I	CGCG	1 cut(s)	164
Bsh1285I	CGRYCG	1 cut(s)	120
BshFI	GGCC	3 cut(s)	25, 309, 467
BsiEI	CGRYCG	1 cut(s)	120
BsiHKAI	GWGCWC	1 cut(s)	148
BsiSI	CCGG	2 cut(s)	113, 296
BslI	CCNNNNNNNGG	2 cut(s)	195, 352
BsmAI	GTCTC	1 cut(s)	49
BsnI	GGCC	3 cut(s)	25, 309, 467
Bsp1286I	GDGCHC	1 cut(s)	148
Bsp143I	GATC	2 cut(s)	200, 412
Bsp1720I	GCTNAGC	1 cut(s)	241
BspACI	CCGC	6 cut(s)	92, 116, 156, 164, 404, 636
BspANI	GGCC	3 cut(s)	25, 309, 467
BspCNI	CTCAG	3 cut(s)	254, 331, 367
BspFNI	CGCG	1 cut(s)	164
BspLI	GGNNCC	3 cut(s)	187, 294, 466
BspMI	ACCTGC	1 cut(s)	415
BsrDI	GCAATG	2 cut(s)	131, 630
BsrFI	RCCGGY	1 cut(s)	112
BsrI	ACTGG	3 cut(s)	189, 310, 628
BssAI	RCCGGY	1 cut(s)	112
BssECI	CCNNGG	1 cut(s)	174
BssMI	GATC	2 cut(s)	200, 412
Bst4CI	ACNGT	1 cut(s)	642
BstC8I	GCNNGC	5 cut(s)	114, 166, 184, 238, 469
BstDEI	CTNAG	3 cut(s)	241, 318, 375
BstF5I	GGATG	1 cut(s)	613
BstFNI	CGCG	1 cut(s)	164
BstHHI	GCGC	2 cut(s)	131, 138
BstKTI	GATC	2 cut(s)	203, 415
BstMAI	GTCTC	1 cut(s)	49
BstMBI	GATC	2 cut(s)	200, 412
BstMCI	CGRYCG	1 cut(s)	120
BstNSI	RCATGY	1 cut(s)	112
BstUI	CGCG	1 cut(s)	164
BstV1I	GCAGC	2 cut(s)	286, 605
Bsu36I	CCTNAGG	1 cut(s)	375
BsuRI	GGCC	3 cut(s)	25, 309, 467
BtsCI	GGATG	1 cut(s)	613
BtsI	GCAGTG	1 cut(s)	596
BtsIMutI	CAGTG	3 cut(s)	196, 596, 638
BveI	ACCTGC	1 cut(s)	415
Cac8I	GCNNGC	5 cut(s)	114, 166, 184, 238, 469
CaiI	CAGNNNCTG	2 cut(s)	195, 430
CfoI	GCGC	2 cut(s)	131, 138
Cfr10I	RCCGGY	1 cut(s)	112
Cfr13I	GGNCC	3 cut(s)	24, 307, 465
CseI	GACGC	1 cut(s)	266
CviAII	CATG	3 cut(s)	109, 124, 347
DdeI	CTNAG	3 cut(s)	241, 318, 375
DpnI	GATC	2 cut(s)	202, 414
DpnII	GATC	2 cut(s)	200, 412
DrdI	GACNNNNNNGTC	1 cut(s)	341
DseDI	GACNNNNNNGTC	1 cut(s)	341
Eco81I	CCTNAGG	1 cut(s)	375
FaeI	CATG	3 cut(s)	112, 127, 350
FaiI	YATR	5 cut(s)	110, 125, 348, 440, 543
FatI	CATG	3 cut(s)	108, 123, 346
FauI	CCCGC	1 cut(s)	157
FblI	GTMKAC	2 cut(s)	120, 333
Fnu4HI	GCNGC	6 cut(s)	93, 156, 300, 404, 594, 636
FokI	GGATG	1 cut(s)	620
Fsp4HI	GCNGC	6 cut(s)	93, 156, 300, 404, 594, 636
FspI	TGCGCA	1 cut(s)	137
GlaI	GCGC	2 cut(s)	130, 137
GluI	GCNGC	6 cut(s)	93, 156, 300, 404, 594, 636
GsaI	CCCAGC	1 cut(s)	572
GsuI	CTGGAG	2 cut(s)	172, 546
HaeIII	GGCC	3 cut(s)	25, 309, 467
HapII	CCGG	2 cut(s)	113, 296
HgaI	GACGC	1 cut(s)	266
HhaI	GCGC	2 cut(s)	131, 138
Hin1II	CATG	3 cut(s)	112, 127, 350
Hin6I	GCGC	2 cut(s)	129, 136
HinP1I	GCGC	2 cut(s)	129, 136
HincII	GTYRAC	2 cut(s)	121, 334
HindII	GTYRAC	2 cut(s)	121, 334
HinfI	GANTC	3 cut(s)	45, 61, 370
HpaII	CCGG	2 cut(s)	113, 296
Hpy166II	GTNNAC	3 cut(s)	121, 280, 334
Hpy188I	TCNGA	5 cut(s)	369, 393, 417, 432, 588
Hpy188III	TCNNGA	2 cut(s)	374, 523
Hpy8I	GTNNAC	3 cut(s)	121, 280, 334
Hpy99I	CGWCG	2 cut(s)	164, 260
HpyCH4III	ACNGT	1 cut(s)	642
HpyCH4IV	ACGT	1 cut(s)	574
HpyCH4V	TGCA	2 cut(s)	302, 630
HpyF3I	CTNAG	3 cut(s)	241, 318, 375
HpySE526I	ACGT	1 cut(s)	574
Hsp92II	CATG	3 cut(s)	112, 127, 350
HspAI	GCGC	2 cut(s)	129, 136
KroI	GCCGGC	1 cut(s)	112
KroNI	GCCGGC	1 cut(s)	114
Kzo9I	GATC	2 cut(s)	200, 412
LmnI	GCTCC	4 cut(s)	99, 151, 191, 298
Lsp1109I	GCAGC	2 cut(s)	286, 605
LweI	GCATC	1 cut(s)	598
MaeII	ACGT	1 cut(s)	574
MalI	GATC	2 cut(s)	202, 414
MboI	GATC	2 cut(s)	200, 412
MhlI	GDGCHC	1 cut(s)	148
MluCI	AATT	1 cut(s)	264
MlyI	GAGTC	2 cut(s)	54, 55
MmeI	TCCRAC	2 cut(s)	73, 371
MnlI	CCTC	6 cut(s)	90, 184, 232, 235, 370, 487
MroNI	GCCGGC	1 cut(s)	112
MroXI	GAANNNNTTC	2 cut(s)	276, 518
MseI	TTAA	1 cut(s)	267
MspA1I	CMGCKG	1 cut(s)	406
MspI	CCGG	2 cut(s)	113, 296
MvnI	CGCG	1 cut(s)	164
NaeI	GCCGGC	1 cut(s)	114
NdeII	GATC	2 cut(s)	200, 412
NgoMIV	GCCGGC	1 cut(s)	112
NlaIII	CATG	3 cut(s)	112, 127, 350
NlaIV	GGNNCC	3 cut(s)	187, 294, 466
NsbI	TGCGCA	1 cut(s)	137
NspI	RCATGY	1 cut(s)	112
PdiI	GCCGGC	1 cut(s)	114
PdmI	GAANNNNTTC	2 cut(s)	276, 518
PfeI	GAWTC	1 cut(s)	370
PflMI	CCANNNNNTGG	1 cut(s)	195
PkrI	GCNGC	6 cut(s)	94, 157, 301, 405, 595, 637
PleI	GAGTC	2 cut(s)	53, 55
PpsI	GAGTC	2 cut(s)	53, 55
PspFI	CCCAGC	1 cut(s)	568
PspN4I	GGNNCC	3 cut(s)	187, 294, 466
PspPI	GGNCC	3 cut(s)	24, 307, 465
PstNI	CAGNNNCTG	2 cut(s)	195, 430
SalI	GTCGAC	2 cut(s)	119, 332
SaqAI	TTAA	1 cut(s)	267
SatI	GCNGC	6 cut(s)	93, 156, 300, 404, 594, 636
Sau3AI	GATC	2 cut(s)	200, 412
Sau96I	GGNCC	3 cut(s)	24, 307, 465
SchI	GAGTC	2 cut(s)	54, 55
SduI	GDGCHC	1 cut(s)	148
SetI	ASST	6 cut(s)	104, 184, 277, 429, 473, 577
SfaNI	GCATC	1 cut(s)	598
Sse9I	AATT	1 cut(s)	264
SsiI	CCGC	6 cut(s)	92, 116, 156, 164, 404, 636
SspI	AATATT	2 cut(s)	551, 582
TaaI	ACNGT	1 cut(s)	642
TaiI	ACGT	1 cut(s)	577
TaqI	TCGA	4 cut(s)	120, 215, 262, 333
TasI	AATT	1 cut(s)	264
TauI	GCSGC	4 cut(s)	95, 158, 406, 638
TfiI	GAWTC	1 cut(s)	370
Tru1I	TTAA	1 cut(s)	267
Tru9I	TTAA	1 cut(s)	267
TscAI	CASTG	3 cut(s)	196, 603, 645
TseI	GCWGC	2 cut(s)	299, 593
TspDTI	ATGAA	2 cut(s)	201, 549
TspGWI	ACGGA	1 cut(s)	138
TspRI	CASTG	3 cut(s)	196, 603, 645
Van91I	CCANNNNNTGG	1 cut(s)	195
XceI	RCATGY	1 cut(s)	112
XmiI	GTMKAC	2 cut(s)	120, 333
XmnI	GAANNNNTTC	2 cut(s)	276, 518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.