AT3G21400

Uncharacterised protein family (UPF0240)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0012114
Physical Location & Seq
Reverse (-)
7534580 .. 7536523
1944 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G21400.1

Sequence Viewer

Length: 567 bp
ATGGGTCAGCAATTGCGTCGAGCTGTTGGGAAAATCAAAGAAGTTGAGAGATCATCACCATCAAGAGTCTCCATTGATCGGAGATCGCTTCCTACGGAGGAGCTCAGTGCCGTGAAATCGTCTCCGTCTACTGCCGCCGTTGATGGAGTTTCTGATAAAGGTCGAAGAACCAGTGAGGATAATGTTTTAGAGGAACGAGACCCCAAGTATGATACAATGTTGAACCAAATGGTTGGGAGAATAAAAGCTAAACCTGGAGGCAAAGCTGAGATGGGAGAGGCATCAGTAGTTGAGACATCGAAAAGGCCACTCCCAAAGCTCCGGAACACAACTCCTGAATCAACAAGATATGAGGAAAACCCGGTGCCTCAAGGAACGTTGAACGTAGCACAAGTGCGACACATCATGCTTCTCTTTCAGGGAAAATCTCAGGATCACCATGGTCCAATGGGTGTTAACGAGATAGCTGAAAAATACCGGATTGATGTCTCTCAGGTTCAGAAGATCACTCAGTTCCTGTCTTTACCTCAAGAGATTACTGATAAGCAGAAGAAACAATATGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0240

Protein Analysis

188

Amino Acids

21.07

Weight (kDa)

9.39

Isoelectric Point (pI)

56.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012114)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G21400
fragaria_vesca FvH4_4g17860
malus_domestica MD13G1169900.v1.1 MD16G1171400.v1.1
prunus_persica Prupe.1G138200_v2.0.a1
pyrus_communis pycom13g14540 pycom16g14370
rosa_chinensis RchiOBHm_Chr4g0421971
rosa_laevigata RLG00000007649
rosa_multiflora Rmu_sc0003255.1_g000006 Rmu_sc0008440.1_g000014 Rmu_sc0012856.1_g000002
rosa_roxburghii Rroxscaffold_5G00364060
rosa_rugosa Rorug04G0176600
rosa_samantha Rh4AG235600 Rh4BG238900 Rh4CG250300 Rh4DG234400
rosa_wichuraiana Rw4G019910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 364
AccI GTMKAC 1 cut(s) 128
AccIII TCCGGA 1 cut(s) 321
AciI CCGC 1 cut(s) 135
AclI AACGTT 1 cut(s) 377
AclWI GGATC 1 cut(s) 441
AfiI CCNNNNNNNGG 1 cut(s) 78
AgsI TTSAA 2 cut(s) 223, 382
AjnI CCWGG 1 cut(s) 253
AluBI AGCT 6 cut(s) 23, 103, 248, 266, 319, 467
AluI AGCT 6 cut(s) 23, 103, 248, 266, 319, 467
Alw21I GWGCWC 1 cut(s) 105
Alw26I GTCTC 5 cut(s) 73, 126, 192, 287, 493
AlwI GGATC 1 cut(s) 441
AlwNI CAGNNNCTG 1 cut(s) 517
Aor13HI TCCGGA 1 cut(s) 321
AoxI GGCC 1 cut(s) 305
AspS9I GGNCC 1 cut(s) 443
AsuC2I CCSGG 1 cut(s) 362
AsuHPI GGTGA 2 cut(s) 48, 428
AvaII GGWCC 1 cut(s) 443
BanI GGYRCC 1 cut(s) 364
BanII GRGCYC 1 cut(s) 105
Bbv12I GWGCWC 1 cut(s) 105
BccI CCATC 3 cut(s) 67, 137, 265
BceAI ACGGC 2 cut(s) 95, 122
BcgI CGANNNNNNTGC 1 cut(s) 33
BciT130I CCWGG 1 cut(s) 255
BcnI CCSGG 1 cut(s) 362
BcoDI GTCTC 5 cut(s) 73, 126, 192, 287, 493
BisI GCNGC 1 cut(s) 135
BlsI GCNGC 1 cut(s) 136
Bme1390I CCNGG 2 cut(s) 255, 362
Bme18I GGWCC 1 cut(s) 443
BmgT120I GGNCC 1 cut(s) 443
BmiI GGNNCC 1 cut(s) 366
BmrFI CCNGG 2 cut(s) 255, 362
BmsI GCATC 1 cut(s) 290
BpmI CTGGAG 1 cut(s) 276
BpuEI CTTGAG 2 cut(s) 354, 513
BpuMI CCSGG 1 cut(s) 362
BsaI GGTCTC 1 cut(s) 192
BsaJI CCNNGG 1 cut(s) 439
BsaWI WCCGGW 2 cut(s) 321, 477
Bsc4I CCNNNNNNNGG 1 cut(s) 78
Bse1I ACTGG 1 cut(s) 171
BseAI TCCGGA 1 cut(s) 321
BseBI CCWGG 1 cut(s) 255
BseDI CCNNGG 1 cut(s) 439
BseLI CCNNNNNNNGG 1 cut(s) 78
BseMII CTCAG 5 cut(s) 118, 258, 443, 506, 524
BseNI ACTGG 1 cut(s) 171
BseRI GAGGAG 1 cut(s) 113
BshFI GGCC 1 cut(s) 307
BshNI GGYRCC 1 cut(s) 364
BsiHKAI GWGCWC 1 cut(s) 105
BsiSI CCGG 3 cut(s) 322, 362, 478
BslI CCNNNNNNNGG 1 cut(s) 78
BsmAI GTCTC 5 cut(s) 73, 126, 192, 287, 493
BsmBI CGTCTC 1 cut(s) 126
BsnI GGCC 1 cut(s) 307
Bso31I GGTCTC 1 cut(s) 192
Bsp1286I GDGCHC 1 cut(s) 105
Bsp13I TCCGGA 1 cut(s) 321
Bsp143I GATC 5 cut(s) 50, 76, 83, 433, 504
Bsp19I CCATGG 1 cut(s) 439
BspACI CCGC 1 cut(s) 135
BspANI GGCC 1 cut(s) 307
BspCNI CTCAG 5 cut(s) 117, 259, 442, 505, 523
BspEI TCCGGA 1 cut(s) 321
BspLI GGNNCC 1 cut(s) 366
BspPI GGATC 1 cut(s) 441
BspT107I GGYRCC 1 cut(s) 364
BspTNI GGTCTC 1 cut(s) 192
BsrI ACTGG 1 cut(s) 171
BssECI CCNNGG 1 cut(s) 439
BssMI GATC 5 cut(s) 50, 76, 83, 433, 504
BssT1I CCWWGG 1 cut(s) 439
Bst2UI CCWGG 1 cut(s) 255
BstDEI CTNAG 5 cut(s) 104, 267, 429, 492, 510
BstDSI CCRYGG 1 cut(s) 439
BstKTI GATC 5 cut(s) 53, 79, 86, 436, 507
BstMAI GTCTC 5 cut(s) 73, 126, 192, 287, 493
BstMBI GATC 5 cut(s) 50, 76, 83, 433, 504
BstNI CCWGG 1 cut(s) 255
BstSCI CCNGG 2 cut(s) 253, 360
BstXI CCANNNNNNTGG 1 cut(s) 233
BsuRI GGCC 1 cut(s) 307
BtgI CCRYGG 1 cut(s) 439
BtsIMutI CAGTG 2 cut(s) 112, 178
CaiI CAGNNNCTG 1 cut(s) 517
Cfr13I GGNCC 1 cut(s) 443
CseI GACGC 1 cut(s) 5
CviAII CATG 2 cut(s) 406, 440
CviJI RGCY 7 cut(s) 23, 103, 248, 266, 307, 319, 467
CviKI_1 RGCY 7 cut(s) 23, 103, 248, 266, 307, 319, 467
DdeI CTNAG 5 cut(s) 104, 267, 429, 492, 510
DpnI GATC 5 cut(s) 52, 78, 85, 435, 506
DpnII GATC 5 cut(s) 50, 76, 83, 433, 504
Ecl136II GAGCTC 1 cut(s) 103
Eco130I CCWWGG 1 cut(s) 439
Eco24I GRGCYC 1 cut(s) 105
Eco31I GGTCTC 1 cut(s) 192
Eco47I GGWCC 1 cut(s) 443
Eco53kI GAGCTC 1 cut(s) 103
EcoICRI GAGCTC 1 cut(s) 103
EcoRII CCWGG 1 cut(s) 253
EcoT14I CCWWGG 1 cut(s) 439
EcoT38I GRGCYC 1 cut(s) 105
ErhI CCWWGG 1 cut(s) 439
Esp3I CGTCTC 1 cut(s) 126
FaeI CATG 2 cut(s) 409, 443
FaiI YATR 5 cut(s) 210, 351, 407, 441, 561
FatI CATG 2 cut(s) 405, 439
FblI GTMKAC 1 cut(s) 128
Fnu4HI GCNGC 1 cut(s) 135
FriOI GRGCYC 1 cut(s) 105
Fsp4HI GCNGC 1 cut(s) 135
GluI GCNGC 1 cut(s) 135
GsuI CTGGAG 1 cut(s) 276
HaeIII GGCC 1 cut(s) 307
HapII CCGG 3 cut(s) 322, 362, 478
HgaI GACGC 1 cut(s) 5
Hin1II CATG 2 cut(s) 409, 443
HincII GTYRAC 1 cut(s) 457
HindII GTYRAC 1 cut(s) 457
HinfI GANTC 2 cut(s) 66, 338
HpaI GTTAAC 1 cut(s) 457
HpaII CCGG 3 cut(s) 322, 362, 478
HphI GGTGA 2 cut(s) 48, 428
Hpy166II GTNNAC 2 cut(s) 129, 457
Hpy188I TCNGA 3 cut(s) 81, 154, 501
Hpy188III TCNNGA 5 cut(s) 63, 322, 335, 431, 530
Hpy8I GTNNAC 2 cut(s) 129, 457
Hpy99I CGWCG 1 cut(s) 21
HpyCH4IV ACGT 2 cut(s) 377, 384
HpyF3I CTNAG 5 cut(s) 104, 267, 429, 492, 510
HpySE526I ACGT 2 cut(s) 377, 384
Hsp92II CATG 2 cut(s) 409, 443
Kpn2I TCCGGA 1 cut(s) 321
KspAI GTTAAC 1 cut(s) 457
Kzo9I GATC 5 cut(s) 50, 76, 83, 433, 504
LmnI GCTCC 2 cut(s) 100, 324
LweI GCATC 1 cut(s) 290
MaeII ACGT 2 cut(s) 377, 384
MalI GATC 5 cut(s) 52, 78, 85, 435, 506
MboI GATC 5 cut(s) 50, 76, 83, 433, 504
MboII GAAGA 3 cut(s) 177, 514, 562
MfeI CAATTG 1 cut(s) 11
MhlI GDGCHC 1 cut(s) 105
MluCI AATT 1 cut(s) 11
MlyI GAGTC 1 cut(s) 75
MnlI CCTC 8 cut(s) 91, 169, 184, 251, 271, 346, 378, 537
MroI TCCGGA 1 cut(s) 321
MseI TTAA 1 cut(s) 456
MspI CCGG 3 cut(s) 322, 362, 478
MspR9I CCNGG 2 cut(s) 255, 362
MunI CAATTG 1 cut(s) 11
MvaI CCWGG 1 cut(s) 255
NciI CCSGG 1 cut(s) 362
NcoI CCATGG 1 cut(s) 439
NdeII GATC 5 cut(s) 50, 76, 83, 433, 504
NlaIII CATG 2 cut(s) 409, 443
NlaIV GGNNCC 1 cut(s) 366
PfeI GAWTC 1 cut(s) 338
PkrI GCNGC 1 cut(s) 136
PleI GAGTC 1 cut(s) 74
PpsI GAGTC 1 cut(s) 74
Psp124BI GAGCTC 1 cut(s) 105
Psp1406I AACGTT 1 cut(s) 377
Psp6I CCWGG 1 cut(s) 253
PspGI CCWGG 1 cut(s) 253
PspN4I GGNNCC 1 cut(s) 366
PspPI GGNCC 1 cut(s) 443
PstNI CAGNNNCTG 1 cut(s) 517
SacI GAGCTC 1 cut(s) 105
SaqAI TTAA 1 cut(s) 456
SatI GCNGC 1 cut(s) 135
Sau3AI GATC 5 cut(s) 50, 76, 83, 433, 504
Sau96I GGNCC 1 cut(s) 443
SchI GAGTC 1 cut(s) 75
ScrFI CCNGG 2 cut(s) 255, 362
SduI GDGCHC 1 cut(s) 105
SfaNI GCATC 1 cut(s) 290
SinI GGWCC 1 cut(s) 443
SmlI CTYRAG 2 cut(s) 369, 528
SmoI CTYRAG 2 cut(s) 369, 528
Sse9I AATT 1 cut(s) 11
SsiI CCGC 1 cut(s) 135
SstI GAGCTC 1 cut(s) 105
StyD4I CCNGG 2 cut(s) 253, 360
StyI CCWWGG 1 cut(s) 439
TaiI ACGT 2 cut(s) 380, 387
TaqI TCGA 3 cut(s) 19, 163, 299
TasI AATT 1 cut(s) 11
TauI GCSGC 1 cut(s) 137
TfiI GAWTC 1 cut(s) 338
Tru1I TTAA 1 cut(s) 456
Tru9I TTAA 1 cut(s) 456
TscAI CASTG 2 cut(s) 112, 178
TspGWI ACGGA 2 cut(s) 110, 114
TspRI CASTG 2 cut(s) 112, 178
VpaK11BI GGWCC 1 cut(s) 443
XmiI GTMKAC 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.