Prupe.1G138200_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0012114
Physical Location & Seq
Reverse (-)
10810011 .. 10811425
1415 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G138200.1

Sequence Viewer

Length: 600 bp
ATGGGTCAGGCACTTCGCCGAGCTGCTGGAAGAATCCGACCCTCTTCCAGCATTGAAACGACGTCGGCGAAGCCAAAGACCGTTGTTGTCGATAAGCGGCCTCCTCCTCTGGGCCCCACCGAATCGGCGGAGATCTCCAAGGCCGGCGACGCTCTTAATTCTGATGGTAGTGCAGCAACAGCAGCAGAAGCAGAAGCAGGAGCAGCCAACGTTGAGAATGTGCTTGAAGAACGAGATCCAAGCTACGACGCCATGCTTAATCAAATGGTGGGTAGAATTAAATCAAAGCCCGGAGGAAAACTGGAGATGGGTGAGGCATTTGTGGTGGAAAAGTATAAGAGGCCTCTACCAAAGCTGAGAGATACAAAGCCAGATTCAGGCAGGTACGAGGAGAGGCCGGCTGCTCCAGGAACTCTGAATGTGGCGCAGCTGCGCCACATAATCCTCCTCCATCAGGGCAAGGCTGAGGATCACAATGGCCCCATGGAGGCGGACCAAATCGCCGACAAGTTCCGGGTTGATGTCGCGGAGGTTCGGAGGATCTTGCAGTTTGTGTCACTGCCCCCAGAGGACAGCAGCAAACAGAAGAACAATCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0240

Protein Analysis

200

Amino Acids

21.53

Weight (kDa)

7.92

Isoelectric Point (pI)

49.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012114)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G21400
fragaria_vesca FvH4_4g17860
malus_domestica MD13G1169900.v1.1 MD16G1171400.v1.1
prunus_persica Prupe.1G138200_v2.0.a1
pyrus_communis pycom13g14540 pycom16g14370
rosa_chinensis RchiOBHm_Chr4g0421971
rosa_laevigata RLG00000007649
rosa_multiflora Rmu_sc0003255.1_g000006 Rmu_sc0008440.1_g000014 Rmu_sc0012856.1_g000002
rosa_roxburghii Rroxscaffold_5G00364060
rosa_rugosa Rorug04G0176600
rosa_samantha Rh4AG235600 Rh4BG238900 Rh4CG250300 Rh4DG234400
rosa_wichuraiana Rw4G019910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 65
Acc36I ACCTGC 1 cut(s) 372
AccII CGCG 1 cut(s) 527
AciI CCGC 4 cut(s) 97, 128, 491, 527
AclI AACGTT 1 cut(s) 210
AclWI GGATC 3 cut(s) 230, 477, 548
AcyI GRCGYC 2 cut(s) 62, 249
AfaI GTAC 1 cut(s) 386
AfiI CCNNNNNNNGG 4 cut(s) 110, 377, 454, 487
AgsI TTSAA 2 cut(s) 56, 227
AjnI CCWGG 1 cut(s) 406
AluBI AGCT 4 cut(s) 23, 243, 355, 430
AluI AGCT 4 cut(s) 23, 243, 355, 430
AlwI GGATC 3 cut(s) 230, 477, 548
AoxI GGCC 6 cut(s) 98, 112, 141, 341, 395, 478
ApaI GGGCCC 1 cut(s) 116
ApeKI GCWGC 8 cut(s) 23, 173, 182, 203, 401, 427, 430, 576
AspLEI GCGC 2 cut(s) 427, 435
AspS9I GGNCC 4 cut(s) 112, 113, 479, 493
AsuC2I CCSGG 2 cut(s) 291, 515
AsuHPI GGTGA 1 cut(s) 323
AvaII GGWCC 1 cut(s) 493
BaeGI GKGCMC 1 cut(s) 116
BanII GRGCYC 1 cut(s) 116
BbvCI CCTCAGC 1 cut(s) 465
BbvI GCAGC 8 cut(s) 10, 185, 194, 215, 388, 417, 439, 588
BccI CCATC 3 cut(s) 158, 301, 459
BciT130I CCWGG 1 cut(s) 408
BcnI CCSGG 2 cut(s) 291, 515
BfuAI ACCTGC 1 cut(s) 372
BglII AGATCT 1 cut(s) 132
BisI GCNGC 9 cut(s) 24, 98, 174, 183, 204, 402, 428, 431, 577
BlsI GCNGC 9 cut(s) 25, 99, 175, 184, 205, 403, 429, 432, 578
Bme1390I CCNGG 3 cut(s) 291, 408, 515
Bme18I GGWCC 1 cut(s) 493
BmgT120I GGNCC 4 cut(s) 112, 113, 479, 493
BmiI GGNNCC 3 cut(s) 114, 115, 481
BmrFI CCNGG 3 cut(s) 291, 408, 515
BpmI CTGGAG 2 cut(s) 323, 390
Bpu10I CCTNAGC 1 cut(s) 465
BpuMI CCSGG 2 cut(s) 291, 515
BsaHI GRCGYC 2 cut(s) 62, 249
BsaJI CCNNGG 2 cut(s) 138, 483
Bsc4I CCNNNNNNNGG 4 cut(s) 110, 377, 454, 487
Bse118I RCCGGY 2 cut(s) 143, 397
Bse1I ACTGG 1 cut(s) 306
BseBI CCWGG 1 cut(s) 408
BseDI CCNNGG 2 cut(s) 138, 483
BseLI CCNNNNNNNGG 4 cut(s) 110, 377, 454, 487
BseMII CTCAG 2 cut(s) 347, 456
BseNI ACTGG 1 cut(s) 306
BseRI GAGGAG 4 cut(s) 93, 96, 404, 437
BseSI GKGCMC 1 cut(s) 116
BseXI GCAGC 8 cut(s) 10, 185, 194, 215, 388, 417, 439, 588
BsgI GTGCAG 1 cut(s) 192
Bsh1236I CGCG 1 cut(s) 527
BshFI GGCC 6 cut(s) 100, 114, 143, 343, 397, 480
BsiSI CCGG 4 cut(s) 144, 291, 398, 514
BslI CCNNNNNNNGG 4 cut(s) 110, 377, 454, 487
BsnI GGCC 6 cut(s) 100, 114, 143, 343, 397, 480
Bsp120I GGGCCC 1 cut(s) 112
Bsp1286I GDGCHC 1 cut(s) 116
Bsp143I GATC 4 cut(s) 132, 235, 469, 540
Bsp19I CCATGG 1 cut(s) 483
BspACI CCGC 4 cut(s) 97, 128, 491, 527
BspANI GGCC 6 cut(s) 100, 114, 143, 343, 397, 480
BspCNI CTCAG 2 cut(s) 348, 457
BspFNI CGCG 1 cut(s) 527
BspLI GGNNCC 3 cut(s) 114, 115, 481
BspMI ACCTGC 1 cut(s) 372
BspPI GGATC 3 cut(s) 230, 477, 548
BsrFI RCCGGY 2 cut(s) 143, 397
BsrI ACTGG 1 cut(s) 306
BssAI RCCGGY 2 cut(s) 143, 397
BssECI CCNNGG 2 cut(s) 138, 483
BssMI GATC 4 cut(s) 132, 235, 469, 540
BssNI GRCGYC 2 cut(s) 62, 249
BssT1I CCWWGG 2 cut(s) 138, 483
Bst2UI CCWGG 1 cut(s) 408
Bst4CI ACNGT 1 cut(s) 82
Bst6I CTCTTC 1 cut(s) 49
BstACI GRCGYC 2 cut(s) 62, 249
BstC8I GCNNGC 2 cut(s) 145, 399
BstDEI CTNAG 2 cut(s) 356, 465
BstDSI CCRYGG 1 cut(s) 483
BstENI CCTNNNNNAGG 1 cut(s) 452
BstFNI CGCG 1 cut(s) 527
BstHHI GCGC 2 cut(s) 427, 435
BstKTI GATC 4 cut(s) 135, 238, 472, 543
BstMBI GATC 4 cut(s) 132, 235, 469, 540
BstMWI GCNNNNNNNGC 5 cut(s) 149, 179, 182, 188, 203
BstNI CCWGG 1 cut(s) 408
BstSCI CCNGG 3 cut(s) 289, 406, 513
BstSLI GKGCMC 1 cut(s) 116
BstUI CGCG 1 cut(s) 527
BstV1I GCAGC 8 cut(s) 10, 185, 194, 215, 388, 417, 439, 588
BstX2I RGATCY 3 cut(s) 132, 235, 540
BstYI RGATCY 3 cut(s) 132, 235, 540
BsuRI GGCC 6 cut(s) 100, 114, 143, 343, 397, 480
BtgI CCRYGG 1 cut(s) 483
BtsI GCAGTG 1 cut(s) 557
BtsIMutI CAGTG 1 cut(s) 557
BveI ACCTGC 1 cut(s) 372
Cac8I GCNNGC 2 cut(s) 145, 399
CfoI GCGC 2 cut(s) 427, 435
Cfr10I RCCGGY 2 cut(s) 143, 397
Cfr13I GGNCC 4 cut(s) 112, 113, 479, 493
CseI GACGC 2 cut(s) 158, 257
Csp6I GTAC 1 cut(s) 385
CviAII CATG 2 cut(s) 253, 484
CviQI GTAC 1 cut(s) 385
DdeI CTNAG 2 cut(s) 356, 465
DpnI GATC 4 cut(s) 134, 237, 471, 542
DpnII GATC 4 cut(s) 132, 235, 469, 540
Eam1104I CTCTTC 1 cut(s) 49
EarI CTCTTC 1 cut(s) 49
EciI GGCGGA 2 cut(s) 143, 506
Eco130I CCWWGG 2 cut(s) 138, 483
Eco147I AGGCCT 1 cut(s) 343
Eco24I GRGCYC 1 cut(s) 116
Eco47I GGWCC 1 cut(s) 493
EcoNI CCTNNNNNAGG 1 cut(s) 452
EcoO109I RGGNCCY 1 cut(s) 113
EcoRII CCWGG 1 cut(s) 406
EcoT14I CCWWGG 2 cut(s) 138, 483
EcoT38I GRGCYC 1 cut(s) 116
ErhI CCWWGG 2 cut(s) 138, 483
FaeI CATG 2 cut(s) 256, 487
FaiI YATR 4 cut(s) 254, 336, 440, 485
FatI CATG 2 cut(s) 252, 483
Fnu4HI GCNGC 9 cut(s) 24, 98, 174, 183, 204, 402, 428, 431, 577
FriOI GRGCYC 1 cut(s) 116
Fsp4HI GCNGC 9 cut(s) 24, 98, 174, 183, 204, 402, 428, 431, 577
GlaI GCGC 2 cut(s) 426, 434
GluI GCNGC 9 cut(s) 24, 98, 174, 183, 204, 402, 428, 431, 577
GsuI CTGGAG 2 cut(s) 323, 390
HaeIII GGCC 6 cut(s) 100, 114, 143, 343, 397, 480
HapII CCGG 4 cut(s) 144, 291, 398, 514
HgaI GACGC 2 cut(s) 158, 257
HhaI GCGC 2 cut(s) 427, 435
Hin1I GRCGYC 2 cut(s) 62, 249
Hin1II CATG 2 cut(s) 256, 487
Hin6I GCGC 2 cut(s) 425, 433
HinP1I GCGC 2 cut(s) 425, 433
HinfI GANTC 3 cut(s) 33, 122, 374
HpaII CCGG 4 cut(s) 144, 291, 398, 514
HphI GGTGA 1 cut(s) 323
Hpy188I TCNGA 4 cut(s) 38, 163, 417, 537
Hpy99I CGWCG 4 cut(s) 64, 67, 152, 251
HpyCH4III ACNGT 1 cut(s) 82
HpyCH4IV ACGT 2 cut(s) 62, 210
HpyCH4V TGCA 2 cut(s) 173, 547
HpyF10VI GCNNNNNNNGC 5 cut(s) 149, 179, 182, 188, 203
HpyF3I CTNAG 2 cut(s) 356, 465
HpySE526I ACGT 2 cut(s) 62, 210
Hsp92I GRCGYC 2 cut(s) 62, 249
Hsp92II CATG 2 cut(s) 256, 487
HspAI GCGC 2 cut(s) 425, 433
KroI GCCGGC 2 cut(s) 143, 397
KroNI GCCGGC 2 cut(s) 145, 399
Kzo9I GATC 4 cut(s) 132, 235, 469, 540
LmnI GCTCC 2 cut(s) 200, 409
Lsp1109I GCAGC 8 cut(s) 10, 185, 194, 215, 388, 417, 439, 588
MaeII ACGT 2 cut(s) 62, 210
MaeIII GTNAC 1 cut(s) 555
MalI GATC 4 cut(s) 134, 237, 471, 542
MboI GATC 4 cut(s) 132, 235, 469, 540
MboII GAAGA 4 cut(s) 36, 42, 239, 598
MflI RGATCY 3 cut(s) 132, 235, 540
MhlI GDGCHC 1 cut(s) 116
MluCI AATT 2 cut(s) 157, 276
MmeI TCCRAC 1 cut(s) 61
MroNI GCCGGC 2 cut(s) 143, 397
MseI TTAA 3 cut(s) 156, 258, 279
MspA1I CMGCKG 1 cut(s) 430
MspI CCGG 4 cut(s) 144, 291, 398, 514
MspR9I CCNGG 3 cut(s) 291, 408, 515
MvaI CCWGG 1 cut(s) 408
MvnI CGCG 1 cut(s) 527
MwoI GCNNNNNNNGC 5 cut(s) 149, 179, 182, 188, 203
NaeI GCCGGC 2 cut(s) 145, 399
NciI CCSGG 2 cut(s) 291, 515
NcoI CCATGG 1 cut(s) 483
NdeII GATC 4 cut(s) 132, 235, 469, 540
NgoMIV GCCGGC 2 cut(s) 143, 397
NlaIII CATG 2 cut(s) 256, 487
NlaIV GGNNCC 3 cut(s) 114, 115, 481
NmeAIII GCCGAG 1 cut(s) 44
NmuCI GTSAC 1 cut(s) 555
PceI AGGCCT 1 cut(s) 343
PcsI WCGNNNNNNNCGW 1 cut(s) 65
PdiI GCCGGC 2 cut(s) 145, 399
PfeI GAWTC 3 cut(s) 33, 122, 374
PfoI TCCNGGA 1 cut(s) 406
PkrI GCNGC 9 cut(s) 25, 99, 175, 184, 205, 403, 429, 432, 578
Psp1406I AACGTT 1 cut(s) 210
Psp6I CCWGG 1 cut(s) 406
PspGI CCWGG 1 cut(s) 406
PspN4I GGNNCC 3 cut(s) 114, 115, 481
PspOMI GGGCCC 1 cut(s) 112
PspPI GGNCC 4 cut(s) 112, 113, 479, 493
PsuI RGATCY 3 cut(s) 132, 235, 540
PvuII CAGCTG 1 cut(s) 430
RsaI GTAC 1 cut(s) 386
RsaNI GTAC 1 cut(s) 385
SaqAI TTAA 3 cut(s) 156, 258, 279
SatI GCNGC 9 cut(s) 24, 98, 174, 183, 204, 402, 428, 431, 577
Sau3AI GATC 4 cut(s) 132, 235, 469, 540
Sau96I GGNCC 4 cut(s) 112, 113, 479, 493
ScrFI CCNGG 3 cut(s) 291, 408, 515
SduI GDGCHC 1 cut(s) 116
SetI ASST 8 cut(s) 25, 65, 213, 245, 357, 386, 432, 534
SinI GGWCC 1 cut(s) 493
Sse9I AATT 2 cut(s) 157, 276
SseBI AGGCCT 1 cut(s) 343
SsiI CCGC 4 cut(s) 97, 128, 491, 527
StuI AGGCCT 1 cut(s) 343
StyD4I CCNGG 3 cut(s) 289, 406, 513
StyI CCWWGG 2 cut(s) 138, 483
TaaI ACNGT 1 cut(s) 82
TaiI ACGT 2 cut(s) 65, 213
TaqI TCGA 1 cut(s) 90
TasI AATT 2 cut(s) 157, 276
TauI GCSGC 1 cut(s) 100
TfiI GAWTC 3 cut(s) 33, 122, 374
Tru1I TTAA 3 cut(s) 156, 258, 279
Tru9I TTAA 3 cut(s) 156, 258, 279
TscAI CASTG 1 cut(s) 564
TseFI GTSAC 1 cut(s) 555
TseI GCWGC 8 cut(s) 23, 173, 182, 203, 401, 427, 430, 576
Tsp45I GTSAC 1 cut(s) 555
TspRI CASTG 1 cut(s) 564
VpaK11BI GGWCC 1 cut(s) 493
XagI CCTNNNNNAGG 1 cut(s) 452
ZraI GACGTC 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.