MD16G1171400.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0012114
Physical Location & Seq
Reverse (-)
14384048 .. 14385460
1413 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1171400.v1.1.491

Sequence Viewer

Length: 588 bp
ATGGGTCAGGCGCTGCGCCGAGCTGCTGGAAGAACGCGACCCTCTTCGACCGTCGAAACGGCGTCGTCCAAACCGAAGACCGTCGTCGTCGATAAGCGGCCTCCTCTGGTTCCCCCCGAACGGGCGGAGATCTCCAAGACCGGCGGCGCTATTGATTCTGATGGCAGTGCAGGAACAGGAGGAGCCGTGGAAGCAGTCGAAAATGTGCTCGAAGAACGAGATCCAAATTACGACGCCATGCTCAATCAAATGGTGGGTAGAATCAAAGCAAAGCCCGGAGGCAAATTTGAGATGGGCGAGGCAAATGTGGTGGACAAGTATAAGAGGCCTCTACCTAAACTGAGGGATACGAAGCCAGATTCCGGGAGTTATGAGGAGAGGCCTGCTCCGCCGGGAACTCTGAATGTGGCACAGCTGCGCCACATTATTCTGCTGCATCAGGGCAAGGCCGAGGATCACAATGGCCGCATGGAGCCGGACCAAATTGCTGAGAAGTTCCGGGTTGATGTTGCTGAGGTTCGGAGGATCTTGCAGTTTGTAGCACTGCCTCCGGAGGATGGCAGTGGCAAACAGAACAACAATCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0240

Protein Analysis

196

Amino Acids

21.21

Weight (kDa)

9.12

Isoelectric Point (pI)

47.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012114)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G21400
fragaria_vesca FvH4_4g17860
malus_domestica MD13G1169900.v1.1 MD16G1171400.v1.1
prunus_persica Prupe.1G138200_v2.0.a1
pyrus_communis pycom13g14540 pycom16g14370
rosa_chinensis RchiOBHm_Chr4g0421971
rosa_laevigata RLG00000007649
rosa_multiflora Rmu_sc0003255.1_g000006 Rmu_sc0008440.1_g000014 Rmu_sc0012856.1_g000002
rosa_roxburghii Rroxscaffold_5G00364060
rosa_rugosa Rorug04G0176600
rosa_samantha Rh4AG235600 Rh4BG238900 Rh4CG250300 Rh4DG234400
rosa_wichuraiana Rw4G019910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 37
AccIII TCCGGA 1 cut(s) 550
AciI CCGC 5 cut(s) 97, 125, 144, 389, 466
AclWI GGATC 3 cut(s) 215, 462, 533
AcoI YGGCCR 1 cut(s) 463
AcsI RAATTY 1 cut(s) 284
AcyI GRCGYC 2 cut(s) 62, 234
AfiI CCNNNNNNNGG 4 cut(s) 120, 121, 362, 557
AluBI AGCT 2 cut(s) 23, 415
AluI AGCT 2 cut(s) 23, 415
Alw21I GWGCWC 1 cut(s) 210
AlwI GGATC 3 cut(s) 215, 462, 533
AlwNI CAGNNNCTG 1 cut(s) 13
Aor13HI TCCGGA 1 cut(s) 550
AoxI GGCC 5 cut(s) 98, 326, 380, 447, 463
ApeKI GCWGC 4 cut(s) 13, 23, 415, 433
ApoI RAATTY 1 cut(s) 284
AspLEI GCGC 4 cut(s) 13, 18, 149, 420
AspS9I GGNCC 1 cut(s) 478
AsuC2I CCSGG 4 cut(s) 276, 364, 393, 500
AvaII GGWCC 1 cut(s) 478
BbsI GAAGAC 1 cut(s) 83
Bbv12I GWGCWC 1 cut(s) 210
BbvCI CCTCAGC 1 cut(s) 513
BbvI GCAGC 3 cut(s) 10, 402, 420
BccI CCATC 3 cut(s) 155, 286, 551
BceAI ACGGC 2 cut(s) 75, 170
BciVI GTATCC 1 cut(s) 340
BcnI CCSGG 4 cut(s) 276, 364, 393, 500
BfoI RGCGCY 2 cut(s) 14, 150
BfuI GTATCC 1 cut(s) 340
BglII AGATCT 1 cut(s) 129
BisI GCNGC 7 cut(s) 14, 24, 98, 145, 416, 434, 466
BlsI GCNGC 7 cut(s) 15, 25, 99, 146, 417, 435, 467
Bme1390I CCNGG 4 cut(s) 276, 364, 393, 500
Bme18I GGWCC 1 cut(s) 478
BmgT120I GGNCC 1 cut(s) 478
BmiI GGNNCC 3 cut(s) 111, 184, 474
BmrFI CCNGG 4 cut(s) 276, 364, 393, 500
BmsI GCATC 1 cut(s) 445
BoxI GACNNNNGTC 1 cut(s) 83
BpiI GAAGAC 1 cut(s) 83
BplI GAGNNNNNCTC 2 cut(s) 370, 402
Bpu10I CCTNAGC 1 cut(s) 513
BpuMI CCSGG 4 cut(s) 276, 364, 393, 500
BsaHI GRCGYC 2 cut(s) 62, 234
BsaJI CCNNGG 2 cut(s) 186, 450
BsaWI WCCGGW 1 cut(s) 550
BsaXI ACNNNNNCTCC 2 cut(s) 171, 201
Bsc4I CCNNNNNNNGG 4 cut(s) 120, 121, 362, 557
Bse118I RCCGGY 1 cut(s) 140
BseAI TCCGGA 1 cut(s) 550
BseDI CCNNGG 2 cut(s) 186, 450
BseGI GGATG 1 cut(s) 562
BseLI CCNNNNNNNGG 4 cut(s) 120, 121, 362, 557
BseMII CTCAG 3 cut(s) 332, 480, 504
BseRI GAGGAG 3 cut(s) 93, 195, 389
BseXI GCAGC 3 cut(s) 10, 402, 420
BsgI GTGCAG 1 cut(s) 189
Bsh1236I CGCG 1 cut(s) 37
Bsh1285I CGRYCG 1 cut(s) 51
BshFI GGCC 5 cut(s) 100, 328, 382, 449, 465
BsiEI CGRYCG 1 cut(s) 51
BsiHKAI GWGCWC 1 cut(s) 210
BsiSI CCGG 7 cut(s) 141, 276, 363, 392, 476, 499, 551
BslI CCNNNNNNNGG 4 cut(s) 120, 121, 362, 557
BsnI GGCC 5 cut(s) 100, 328, 382, 449, 465
Bsp1286I GDGCHC 1 cut(s) 210
Bsp13I TCCGGA 1 cut(s) 550
Bsp143I GATC 4 cut(s) 129, 220, 454, 525
BspACI CCGC 5 cut(s) 97, 125, 144, 389, 466
BspANI GGCC 5 cut(s) 100, 328, 382, 449, 465
BspCNI CTCAG 3 cut(s) 333, 481, 505
BspEI TCCGGA 1 cut(s) 550
BspFNI CGCG 1 cut(s) 37
BspLI GGNNCC 3 cut(s) 111, 184, 474
BspPI GGATC 3 cut(s) 215, 462, 533
BsrFI RCCGGY 1 cut(s) 140
BssAI RCCGGY 1 cut(s) 140
BssECI CCNNGG 2 cut(s) 186, 450
BssMI GATC 4 cut(s) 129, 220, 454, 525
BssNI GRCGYC 2 cut(s) 62, 234
Bst4CI ACNGT 2 cut(s) 52, 82
Bst6I CTCTTC 1 cut(s) 49
BstACI GRCGYC 2 cut(s) 62, 234
BstC8I GCNNGC 1 cut(s) 384
BstDEI CTNAG 3 cut(s) 341, 489, 513
BstDSI CCRYGG 1 cut(s) 186
BstF5I GGATG 1 cut(s) 562
BstFNI CGCG 1 cut(s) 37
BstH2I RGCGCY 2 cut(s) 14, 150
BstHHI GCGC 4 cut(s) 13, 18, 149, 420
BstKTI GATC 4 cut(s) 132, 223, 457, 528
BstMBI GATC 4 cut(s) 129, 220, 454, 525
BstMCI CGRYCG 1 cut(s) 51
BstMWI GCNNNNNNNGC 2 cut(s) 191, 388
BstPAI GACNNNNGTC 1 cut(s) 83
BstSCI CCNGG 4 cut(s) 274, 362, 391, 498
BstUI CGCG 1 cut(s) 37
BstV1I GCAGC 3 cut(s) 10, 402, 420
BstV2I GAAGAC 1 cut(s) 83
BstX2I RGATCY 3 cut(s) 129, 220, 525
BstYI RGATCY 3 cut(s) 129, 220, 525
BsuI GTATCC 1 cut(s) 340
BsuRI GGCC 5 cut(s) 100, 328, 382, 449, 465
BtgI CCRYGG 1 cut(s) 186
BtsCI GGATG 1 cut(s) 562
BtsI GCAGTG 3 cut(s) 172, 542, 568
BtsIMutI CAGTG 3 cut(s) 172, 542, 568
Cac8I GCNNGC 1 cut(s) 384
CaiI CAGNNNCTG 1 cut(s) 13
CfoI GCGC 4 cut(s) 13, 18, 149, 420
Cfr10I RCCGGY 1 cut(s) 140
Cfr13I GGNCC 1 cut(s) 478
CseI GACGC 2 cut(s) 51, 242
CspCI CAANNNNNGTGG 2 cut(s) 291, 326
CviAII CATG 2 cut(s) 238, 469
DdeI CTNAG 3 cut(s) 341, 489, 513
DpnI GATC 4 cut(s) 131, 222, 456, 527
DpnII GATC 4 cut(s) 129, 220, 454, 525
EaeI YGGCCR 1 cut(s) 463
Eam1104I CTCTTC 1 cut(s) 49
EarI CTCTTC 1 cut(s) 49
EciI GGCGGA 2 cut(s) 140, 378
Eco147I AGGCCT 2 cut(s) 328, 382
Eco47I GGWCC 1 cut(s) 478
FaeI CATG 2 cut(s) 241, 472
FaiI YATR 4 cut(s) 239, 321, 372, 470
FatI CATG 2 cut(s) 237, 468
Fnu4HI GCNGC 7 cut(s) 14, 24, 98, 145, 416, 434, 466
FokI GGATG 1 cut(s) 569
Fsp4HI GCNGC 7 cut(s) 14, 24, 98, 145, 416, 434, 466
GlaI GCGC 4 cut(s) 12, 17, 148, 419
GluI GCNGC 7 cut(s) 14, 24, 98, 145, 416, 434, 466
HaeII RGCGCY 2 cut(s) 14, 150
HaeIII GGCC 5 cut(s) 100, 328, 382, 449, 465
HapII CCGG 7 cut(s) 141, 276, 363, 392, 476, 499, 551
HgaI GACGC 2 cut(s) 51, 242
HhaI GCGC 4 cut(s) 13, 18, 149, 420
Hin1I GRCGYC 2 cut(s) 62, 234
Hin1II CATG 2 cut(s) 241, 472
Hin6I GCGC 4 cut(s) 11, 16, 147, 418
HinP1I GCGC 4 cut(s) 11, 16, 147, 418
HinfI GANTC 3 cut(s) 155, 261, 359
HpaII CCGG 7 cut(s) 141, 276, 363, 392, 476, 499, 551
Hpy166II GTNNAC 1 cut(s) 313
Hpy188I TCNGA 3 cut(s) 160, 402, 522
Hpy188III TCNNGA 1 cut(s) 551
Hpy8I GTNNAC 1 cut(s) 313
Hpy99I CGWCG 6 cut(s) 56, 67, 86, 89, 92, 236
HpyCH4III ACNGT 2 cut(s) 52, 82
HpyCH4V TGCA 3 cut(s) 170, 436, 532
HpyF10VI GCNNNNNNNGC 2 cut(s) 191, 388
HpyF3I CTNAG 3 cut(s) 341, 489, 513
Hsp92I GRCGYC 2 cut(s) 62, 234
Hsp92II CATG 2 cut(s) 241, 472
HspAI GCGC 4 cut(s) 11, 16, 147, 418
Kpn2I TCCGGA 1 cut(s) 550
Kzo9I GATC 4 cut(s) 129, 220, 454, 525
LmnI GCTCC 3 cut(s) 182, 391, 472
Lsp1109I GCAGC 3 cut(s) 10, 402, 420
LweI GCATC 1 cut(s) 445
MalI GATC 4 cut(s) 131, 222, 456, 527
MboI GATC 4 cut(s) 129, 220, 454, 525
MboII GAAGA 4 cut(s) 36, 42, 88, 224
MflI RGATCY 3 cut(s) 129, 220, 525
MhlI GDGCHC 1 cut(s) 210
MluCI AATT 3 cut(s) 226, 284, 483
MroI TCCGGA 1 cut(s) 550
MspA1I CMGCKG 1 cut(s) 415
MspI CCGG 7 cut(s) 141, 276, 363, 392, 476, 499, 551
MspR9I CCNGG 4 cut(s) 276, 364, 393, 500
MteI GCGCNGCGC 1 cut(s) 14
MvnI CGCG 1 cut(s) 37
MwoI GCNNNNNNNGC 2 cut(s) 191, 388
NciI CCSGG 4 cut(s) 276, 364, 393, 500
NdeII GATC 4 cut(s) 129, 220, 454, 525
NlaIII CATG 2 cut(s) 241, 472
NlaIV GGNNCC 3 cut(s) 111, 184, 474
NmeAIII GCCGAG 2 cut(s) 44, 475
PceI AGGCCT 2 cut(s) 328, 382
PcsI WCGNNNNNNNCGW 1 cut(s) 71
PfeI GAWTC 3 cut(s) 155, 261, 359
PfoI TCCNGGA 1 cut(s) 362
PkrI GCNGC 7 cut(s) 15, 25, 99, 146, 417, 435, 467
PshAI GACNNNNGTC 1 cut(s) 83
PspN4I GGNNCC 3 cut(s) 111, 184, 474
PspPI GGNCC 1 cut(s) 478
PstNI CAGNNNCTG 1 cut(s) 13
PsuI RGATCY 3 cut(s) 129, 220, 525
PvuII CAGCTG 1 cut(s) 415
SatI GCNGC 7 cut(s) 14, 24, 98, 145, 416, 434, 466
Sau3AI GATC 4 cut(s) 129, 220, 454, 525
Sau96I GGNCC 1 cut(s) 478
ScrFI CCNGG 4 cut(s) 276, 364, 393, 500
SduI GDGCHC 1 cut(s) 210
SetI ASST 4 cut(s) 25, 337, 417, 519
SfaNI GCATC 1 cut(s) 445
SinI GGWCC 1 cut(s) 478
Sse9I AATT 3 cut(s) 226, 284, 483
SseBI AGGCCT 2 cut(s) 328, 382
SsiI CCGC 5 cut(s) 97, 125, 144, 389, 466
StuI AGGCCT 2 cut(s) 328, 382
StyD4I CCNGG 4 cut(s) 274, 362, 391, 498
TaaI ACNGT 2 cut(s) 52, 82
TaqI TCGA 5 cut(s) 47, 54, 90, 198, 210
TasI AATT 3 cut(s) 226, 284, 483
TauI GCSGC 3 cut(s) 100, 147, 468
TfiI GAWTC 3 cut(s) 155, 261, 359
TscAI CASTG 3 cut(s) 172, 549, 568
TseI GCWGC 4 cut(s) 13, 23, 415, 433
TspRI CASTG 3 cut(s) 172, 549, 568
VpaK11BI GGWCC 1 cut(s) 478
XapI RAATTY 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.