Rmu_sc0003255.1_g000006

ADP binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003255.1
OG0012114
Physical Location & Seq
Reverse (-)
17724 .. 21521
3798 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003255.1_g000006.1.cds

Sequence Viewer

Length: 1023 bp
atgctagcggacattacaaacccacctgtgatattcagagtcagttgttcccaatggagcaaagtccaatttgttcagcttactcatcatgaaagagaacaagaaaaaggaaaatttgccaggaaaaaatcgcttgaaaagtgcccagaaaaatcgtcagaaaagctgccggcggctgctggaatagtggcagaaaagttgaccggtgttgaccagaggattcaggtggccggttcaggggtttttactccggttctgggatgcatatttccggttccaggaatctggaatcaagggactgatgttgacaaaatatggtggtcaaaggttgacttcaaaggtgcggaccgggcagggaaatttctgcttattttgatggctggttcattgtttttcaggctggttctggggacggcaccgccggttctagactcctggagttggaagcttcaaggtgggaggcggaggtttctgggatttgaaggctacaaatttagggttttagggaaatctctcaatattgttatgaagaagctagggactcactatttgaatccattatttctggaaatgaaattccagagtggttcgatcatcaaactgcggcgcctttctatatggacatcgccagttgcagtggcggagccagaaattgggacaacagagttgaaacaaattgaattttcatttcaagtatacggccaaggcttggttgtgaagaaatgtggggtccgtgtagtatatgaacaagatgtggaagaggttaaccggagcaacgctaacatttctgatgaggctttggaaaattttagttctgattttggaaaagcagcagttgtatcacatgccatttctaagcgaggccttcctcactctcgtggagaaggatctagtggaagtgctttttctttttataaggaacctcggcctgatcttttggaaagattaagagcggtgttctacatctatggatttggtatcccctccagacttctcaaagattatctcactcttcaaacctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2 NB-ARC TIR

Protein Analysis

340

Amino Acids

38.06

Weight (kDa)

9.59

Isoelectric Point (pI)

38.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012114)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G21400
fragaria_vesca FvH4_4g17860
malus_domestica MD13G1169900.v1.1 MD16G1171400.v1.1
prunus_persica Prupe.1G138200_v2.0.a1
pyrus_communis pycom13g14540 pycom16g14370
rosa_chinensis RchiOBHm_Chr4g0421971
rosa_laevigata RLG00000007649
rosa_multiflora Rmu_sc0003255.1_g000006 Rmu_sc0008440.1_g000014 Rmu_sc0012856.1_g000002
rosa_roxburghii Rroxscaffold_5G00364060
rosa_rugosa Rorug04G0176600
rosa_samantha Rh4AG235600 Rh4BG238900 Rh4CG250300 Rh4DG234400
rosa_wichuraiana Rw4G019910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 915
AccB1I GGYRCC 2 cut(s) 415, 606
AccB7I CCANNNNNTGG 2 cut(s) 653, 709
AccBSI CCGCTC 1 cut(s) 953
AccI GTMKAC 1 cut(s) 696
AciI CCGC 8 cut(s) 8, 173, 344, 419, 463, 604, 641, 953
AclWI GGATC 1 cut(s) 895
AcoI YGGCCR 2 cut(s) 228, 700
AcsI RAATTY 6 cut(s) 113, 359, 491, 575, 680, 805
AcyI GRCGYC 1 cut(s) 607
AfiI CCNNNNNNNGG 6 cut(s) 237, 257, 278, 441, 653, 709
AgeI ACCGGT 1 cut(s) 203
AgsI TTSAA 9 cut(s) 137, 337, 452, 482, 553, 670, 680, 692, 1016
AjnI CCWGG 3 cut(s) 119, 277, 434
AleI CACNNNNGTG 1 cut(s) 876
AluBI AGCT 4 cut(s) 79, 166, 448, 535
AluI AGCT 4 cut(s) 79, 166, 448, 535
AlwI GGATC 1 cut(s) 895
AoxI GGCC 4 cut(s) 228, 700, 862, 926
ApeKI GCWGC 3 cut(s) 166, 176, 830
ApoI RAATTY 6 cut(s) 113, 359, 491, 575, 680, 805
ArsI GACNNNNNNTTYG 2 cut(s) 532, 564
AsiGI ACCGGT 1 cut(s) 203
AspLEI GCGC 1 cut(s) 609
AspS9I GGNCC 2 cut(s) 346, 730
AsuC2I CCSGG 1 cut(s) 350
AsuNHI GCTAGC 1 cut(s) 4
AvaII GGWCC 2 cut(s) 346, 730
BaeGI GKGCMC 1 cut(s) 146
BanI GGYRCC 2 cut(s) 415, 606
BauI CACGAG 1 cut(s) 876
BbvI GCAGC 3 cut(s) 153, 163, 842
BccI CCATC 1 cut(s) 370
BceAI ACGGC 2 cut(s) 429, 715
BciT130I CCWGG 3 cut(s) 121, 279, 436
BciVI GTATCC 1 cut(s) 989
BcnI CCSGG 1 cut(s) 350
BfaI CTAG 4 cut(s) 5, 428, 536, 891
BfoI RGCGCY 1 cut(s) 610
BfuI GTATCC 1 cut(s) 989
BisI GCNGC 5 cut(s) 167, 174, 177, 605, 831
BlsI GCNGC 5 cut(s) 168, 175, 178, 606, 832
Bme1390I CCNGG 4 cut(s) 121, 279, 350, 436
Bme18I GGWCC 2 cut(s) 346, 730
BmgT120I GGNCC 2 cut(s) 346, 730
BmiI GGNNCC 6 cut(s) 276, 417, 608, 645, 731, 921
BmrFI CCNGG 4 cut(s) 121, 279, 350, 436
BmsI GCATC 1 cut(s) 251
BmtI GCTAGC 1 cut(s) 8
BpmI CTGGAG 2 cut(s) 457, 970
BpuMI CCSGG 1 cut(s) 350
BsaHI GRCGYC 1 cut(s) 607
BsaJI CCNNGG 2 cut(s) 703, 923
BsaWI WCCGGW 4 cut(s) 203, 250, 271, 768
Bsc4I CCNNNNNNNGG 6 cut(s) 237, 257, 278, 441, 653, 709
Bse118I RCCGGY 4 cut(s) 169, 203, 230, 421
Bse1I ACTGG 1 cut(s) 629
BseBI CCWGG 3 cut(s) 121, 279, 436
BseDI CCNNGG 2 cut(s) 703, 923
BseGI GGATG 1 cut(s) 266
BseLI CCNNNNNNNGG 6 cut(s) 237, 257, 278, 441, 653, 709
BseNI ACTGG 1 cut(s) 629
BseSI GKGCMC 1 cut(s) 146
BseXI GCAGC 3 cut(s) 153, 163, 842
BshFI GGCC 4 cut(s) 230, 702, 864, 928
BshNI GGYRCC 2 cut(s) 415, 606
BshTI ACCGGT 1 cut(s) 203
BsiSI CCGG 8 cut(s) 170, 204, 231, 251, 272, 349, 422, 769
BslFI GGGAC 4 cut(s) 310, 424, 553, 670
BslI CCNNNNNNNGG 6 cut(s) 237, 257, 278, 441, 653, 709
BsmFI GGGAC 4 cut(s) 310, 424, 553, 670
BsnI GGCC 4 cut(s) 230, 702, 864, 928
Bsp1286I GDGCHC 1 cut(s) 146
Bsp143I GATC 3 cut(s) 591, 887, 931
BspACI CCGC 8 cut(s) 8, 173, 344, 419, 463, 604, 641, 953
BspANI GGCC 4 cut(s) 230, 702, 864, 928
BspHI TCATGA 1 cut(s) 88
BspLI GGNNCC 6 cut(s) 276, 417, 608, 645, 731, 921
BspOI GCTAGC 1 cut(s) 8
BspPI GGATC 1 cut(s) 895
BspT107I GGYRCC 2 cut(s) 415, 606
BsrBI CCGCTC 1 cut(s) 953
BsrFI RCCGGY 4 cut(s) 169, 203, 230, 421
BsrI ACTGG 1 cut(s) 629
BssAI RCCGGY 4 cut(s) 169, 203, 230, 421
BssECI CCNNGG 2 cut(s) 703, 923
BssMI GATC 3 cut(s) 591, 887, 931
BssNAI GTATAC 1 cut(s) 697
BssNI GRCGYC 1 cut(s) 607
BssSI CACGAG 1 cut(s) 876
BssT1I CCWWGG 1 cut(s) 703
Bst1107I GTATAC 1 cut(s) 697
Bst2BI CACGAG 1 cut(s) 876
Bst2UI CCWGG 3 cut(s) 121, 279, 436
Bst6I CTCTTC 2 cut(s) 753, 1017
BstACI GRCGYC 1 cut(s) 607
BstC8I GCNNGC 2 cut(s) 6, 171
BstDEI CTNAG 1 cut(s) 855
BstF5I GGATG 1 cut(s) 266
BstH2I RGCGCY 1 cut(s) 610
BstHHI GCGC 1 cut(s) 609
BstKTI GATC 3 cut(s) 594, 890, 934
BstMBI GATC 3 cut(s) 591, 887, 931
BstMWI GCNNNNNNNGC 1 cut(s) 350
BstNI CCWGG 3 cut(s) 121, 279, 436
BstNSI RCATGY 1 cut(s) 848
BstSCI CCNGG 4 cut(s) 119, 277, 348, 434
BstSLI GKGCMC 1 cut(s) 146
BstV1I GCAGC 3 cut(s) 153, 163, 842
BstX2I RGATCY 1 cut(s) 887
BstXI CCANNNNNNTGG 1 cut(s) 285
BstYI RGATCY 1 cut(s) 887
BstZ17I GTATAC 1 cut(s) 697
BsuI GTATCC 1 cut(s) 989
BsuRI GGCC 4 cut(s) 230, 702, 864, 928
BtgZI GCGATG 1 cut(s) 609
BtsCI GGATG 1 cut(s) 266
BtsI GCAGTG 1 cut(s) 642
BtsIMutI CAGTG 1 cut(s) 642
Cac8I GCNNGC 2 cut(s) 6, 171
CciI TCATGA 1 cut(s) 88
CfoI GCGC 1 cut(s) 609
Cfr10I RCCGGY 4 cut(s) 169, 203, 230, 421
Cfr13I GGNCC 2 cut(s) 346, 730
CpoI CGGWCCG 1 cut(s) 346
CspAI ACCGGT 1 cut(s) 203
CspI CGGWCCG 1 cut(s) 346
CviAII CATG 2 cut(s) 89, 845
DdeI CTNAG 1 cut(s) 855
DinI GGCGCC 1 cut(s) 608
DpnI GATC 3 cut(s) 593, 889, 933
DpnII GATC 3 cut(s) 591, 887, 931
EaeI YGGCCR 2 cut(s) 228, 700
Eam1104I CTCTTC 2 cut(s) 753, 1017
EarI CTCTTC 2 cut(s) 753, 1017
EciI GGCGGA 2 cut(s) 478, 656
Eco130I CCWWGG 1 cut(s) 703
Eco147I AGGCCT 1 cut(s) 864
Eco47I GGWCC 2 cut(s) 346, 730
EcoRII CCWGG 3 cut(s) 119, 277, 434
EcoT14I CCWWGG 1 cut(s) 703
EcoT22I ATGCAT 1 cut(s) 266
EgeI GGCGCC 1 cut(s) 608
EheI GGCGCC 1 cut(s) 608
ErhI CCWWGG 1 cut(s) 703
FaeI CATG 2 cut(s) 92, 848
FalI AAGNNNNNCTT 2 cut(s) 317, 349
FaqI GGGAC 4 cut(s) 310, 424, 553, 670
FatI CATG 2 cut(s) 88, 844
FblI GTMKAC 1 cut(s) 696
Fnu4HI GCNGC 5 cut(s) 167, 174, 177, 605, 831
FokI GGATG 1 cut(s) 273
Fsp4HI GCNGC 5 cut(s) 167, 174, 177, 605, 831
FspBI CTAG 4 cut(s) 5, 428, 536, 891
GlaI GCGC 1 cut(s) 608
GluI GCNGC 5 cut(s) 167, 174, 177, 605, 831
GsuI CTGGAG 2 cut(s) 457, 970
HaeII RGCGCY 1 cut(s) 610
HaeIII GGCC 4 cut(s) 230, 702, 864, 928
HapII CCGG 8 cut(s) 170, 204, 231, 251, 272, 349, 422, 769
HhaI GCGC 1 cut(s) 609
Hin1I GRCGYC 1 cut(s) 607
Hin1II CATG 2 cut(s) 92, 848
Hin6I GCGC 1 cut(s) 607
HinP1I GCGC 1 cut(s) 607
HincII GTYRAC 5 cut(s) 201, 211, 307, 331, 766
HindII GTYRAC 5 cut(s) 201, 211, 307, 331, 766
HindIII AAGCTT 1 cut(s) 446
HinfI GANTC 7 cut(s) 39, 220, 282, 289, 431, 541, 553
HpaI GTTAAC 1 cut(s) 766
HpaII CCGG 8 cut(s) 170, 204, 231, 251, 272, 349, 422, 769
Hpy166II GTNNAC 6 cut(s) 201, 211, 307, 331, 697, 766
Hpy188I TCNGA 4 cut(s) 38, 160, 790, 817
Hpy188III TCNNGA 6 cut(s) 89, 286, 428, 566, 580, 987
Hpy8I GTNNAC 6 cut(s) 201, 211, 307, 331, 697, 766
HpyAV CCTTC 3 cut(s) 476, 875, 878
HpyCH4V TGCA 2 cut(s) 264, 635
HpyF10VI GCNNNNNNNGC 1 cut(s) 350
HpyF3I CTNAG 1 cut(s) 855
Hsp92I GRCGYC 1 cut(s) 607
Hsp92II CATG 2 cut(s) 92, 848
HspAI GCGC 1 cut(s) 607
KasI GGCGCC 1 cut(s) 606
KroI GCCGGC 1 cut(s) 169
KroNI GCCGGC 1 cut(s) 171
KspAI GTTAAC 1 cut(s) 766
Kzo9I GATC 3 cut(s) 591, 887, 931
LmnI GCTCC 3 cut(s) 57, 643, 771
Lsp1109I GCAGC 3 cut(s) 153, 163, 842
LweI GCATC 1 cut(s) 251
MaeI CTAG 4 cut(s) 5, 428, 536, 891
MalI GATC 3 cut(s) 593, 889, 933
MbiI CCGCTC 1 cut(s) 953
MboI GATC 3 cut(s) 591, 887, 931
MboII GAAGA 4 cut(s) 541, 730, 770, 1004
MflI RGATCY 1 cut(s) 887
MhlI GDGCHC 1 cut(s) 146
MluCI AATT 9 cut(s) 68, 113, 359, 491, 575, 651, 675, 680, 805
Mly113I GGCGCC 1 cut(s) 607
MlyI GAGTC 3 cut(s) 48, 425, 535
MmeI TCCRAC 1 cut(s) 422
MnlI CCTC 9 cut(s) 210, 453, 459, 754, 787, 854, 879, 933, 994
Mph1103I ATGCAT 1 cut(s) 266
MroNI GCCGGC 1 cut(s) 169
MseI TTAA 2 cut(s) 765, 947
MslI CAYNNNNRTG 1 cut(s) 876
MspI CCGG 8 cut(s) 170, 204, 231, 251, 272, 349, 422, 769
MspR9I CCNGG 4 cut(s) 121, 279, 350, 436
MvaI CCWGG 3 cut(s) 121, 279, 436
MwoI GCNNNNNNNGC 1 cut(s) 350
NaeI GCCGGC 1 cut(s) 171
NarI GGCGCC 1 cut(s) 607
NciI CCSGG 1 cut(s) 350
NdeII GATC 3 cut(s) 591, 887, 931
NgoMIV GCCGGC 1 cut(s) 169
NheI GCTAGC 1 cut(s) 4
NlaIII CATG 2 cut(s) 92, 848
NlaIV GGNNCC 6 cut(s) 276, 417, 608, 645, 731, 921
NmeAIII GCCGAG 1 cut(s) 904
NsiI ATGCAT 1 cut(s) 266
NspI RCATGY 1 cut(s) 848
OliI CACNNNNGTG 1 cut(s) 876
PagI TCATGA 1 cut(s) 88
PceI AGGCCT 1 cut(s) 864
PdiI GCCGGC 1 cut(s) 171
PfeI GAWTC 4 cut(s) 220, 282, 289, 553
PflMI CCANNNNNTGG 2 cut(s) 653, 709
PfoI TCCNGGA 2 cut(s) 277, 434
PinAI ACCGGT 1 cut(s) 203
PkrI GCNGC 5 cut(s) 168, 175, 178, 606, 832
PleI GAGTC 3 cut(s) 47, 425, 535
PluTI GGCGCC 1 cut(s) 610
PpsI GAGTC 3 cut(s) 47, 425, 535
PsiI TTATAA 1 cut(s) 915
Psp6I CCWGG 3 cut(s) 119, 277, 434
PspGI CCWGG 3 cut(s) 119, 277, 434
PspN4I GGNNCC 6 cut(s) 276, 417, 608, 645, 731, 921
PspPI GGNCC 2 cut(s) 346, 730
PsuI RGATCY 1 cut(s) 887
RseI CAYNNNNRTG 1 cut(s) 876
Rsr2I CGGWCCG 1 cut(s) 346
RsrII CGGWCCG 1 cut(s) 346
SaqAI TTAA 2 cut(s) 765, 947
SatI GCNGC 5 cut(s) 167, 174, 177, 605, 831
Sau3AI GATC 3 cut(s) 591, 887, 931
Sau96I GGNCC 2 cut(s) 346, 730
SchI GAGTC 3 cut(s) 48, 425, 535
ScrFI CCNGG 4 cut(s) 121, 279, 350, 436
SduI GDGCHC 1 cut(s) 146
SfaNI GCATC 1 cut(s) 251
SfoI GGCGCC 1 cut(s) 608
SinI GGWCC 2 cut(s) 346, 730
SmiMI CAYNNNNRTG 1 cut(s) 876
Sse9I AATT 9 cut(s) 68, 113, 359, 491, 575, 651, 675, 680, 805
SseBI AGGCCT 1 cut(s) 864
SsiI CCGC 8 cut(s) 8, 173, 344, 419, 463, 604, 641, 953
SspDI GGCGCC 1 cut(s) 606
SspI AATATT 1 cut(s) 520
SspMI CTAG 4 cut(s) 5, 428, 536, 891
StuI AGGCCT 1 cut(s) 864
StyD4I CCNGG 4 cut(s) 119, 277, 348, 434
StyI CCWWGG 1 cut(s) 703
TaqI TCGA 1 cut(s) 590
TasI AATT 9 cut(s) 68, 113, 359, 491, 575, 651, 675, 680, 805
TauI GCSGC 2 cut(s) 176, 607
TfiI GAWTC 4 cut(s) 220, 282, 289, 553
Tru1I TTAA 2 cut(s) 765, 947
Tru9I TTAA 2 cut(s) 765, 947
TscAI CASTG 1 cut(s) 642
TseI GCWGC 3 cut(s) 166, 176, 830
TspDTI ATGAA 6 cut(s) 105, 375, 542, 587, 675, 759
TspGWI ACGGA 1 cut(s) 722
TspRI CASTG 1 cut(s) 642
Van91I CCANNNNNTGG 2 cut(s) 653, 709
VpaK11BI GGWCC 2 cut(s) 346, 730
XapI RAATTY 6 cut(s) 113, 359, 491, 575, 680, 805
XbaI TCTAGA 1 cut(s) 427
XceI RCATGY 1 cut(s) 848
XmiI GTMKAC 1 cut(s) 696
XspI CTAG 4 cut(s) 5, 428, 536, 891
Zsp2I ATGCAT 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.