FvH4_4g17860

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0012114
Physical Location & Seq
Forward (+)
21838623 .. 21840190
1568 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g17860.t1

Sequence Viewer

Length: 552 bp
ATGGGCCAGGCACTTCGCCGAGCCGCCGGGAAAGCCCGACCCGGTTCAACCATCGAAACGCCGTCGTCTTCTTCCTCAATACCCAAGACCGTCGTCAATCACCGGCCTCCGGTCACTCCCCCGGAACCGGTTCCGGAGATCACCAAACCCGATTCCGATGGTAGTGAGAATCTGCTTGAAGAACGCGATCCCAAGTTCGATTCGATGCTGAATCAGATGGTGGGGAGGATCAAATCGAAGCCCGGAGGGAAACCGGAAATGGGTGAGGCACATGTGGTGGAGAAGTATAAGAGGCCGCTACCGAAGCTGAGGGACACGAAGCCGGATTCTGGTAGGTTTGAGGAAAGAGCAGCTCCACCGGGGACTCTGAATGTGTCGCAGCTGCGGCACATTATACTACTGCATCAGGGCAAGGCTGAGGATCACAATGGCCCCATGGAGGTGCAGAGAATTGCGGAGAAGTTTCGGGTTGATGTAGCTGAGGTTAGGAGGATTGTGCAGTTTGTGTCACTGCCTCCTGAGGATAATAGTAAACAGAAGAAGAATTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0240

Protein Analysis

184

Amino Acids

20.29

Weight (kDa)

9.61

Isoelectric Point (pI)

56.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012114)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G21400
fragaria_vesca FvH4_4g17860
malus_domestica MD13G1169900.v1.1 MD16G1171400.v1.1
prunus_persica Prupe.1G138200_v2.0.a1
pyrus_communis pycom13g14540 pycom16g14370
rosa_chinensis RchiOBHm_Chr4g0421971
rosa_laevigata RLG00000007649
rosa_multiflora Rmu_sc0003255.1_g000006 Rmu_sc0008440.1_g000014 Rmu_sc0012856.1_g000002
rosa_roxburghii Rroxscaffold_5G00364060
rosa_rugosa Rorug04G0176600
rosa_samantha Rh4AG235600 Rh4BG238900 Rh4CG250300 Rh4DG234400
rosa_wichuraiana Rw4G019910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 186
AccIII TCCGGA 1 cut(s) 133
AciI CCGC 4 cut(s) 24, 296, 385, 455
AclWI GGATC 3 cut(s) 182, 236, 429
AcsI RAATTY 1 cut(s) 544
AfiI CCNNNNNNNGG 5 cut(s) 109, 127, 260, 329, 439
AflIII ACRYGT 1 cut(s) 271
AgeI ACCGGT 1 cut(s) 127
AgsI TTSAA 2 cut(s) 48, 179
AjnI CCWGG 1 cut(s) 6
AluBI AGCT 4 cut(s) 307, 353, 382, 479
AluI AGCT 4 cut(s) 307, 353, 382, 479
AlwI GGATC 3 cut(s) 182, 236, 429
Aor13HI TCCGGA 1 cut(s) 133
AoxI GGCC 4 cut(s) 4, 104, 293, 430
ApeKI GCWGC 3 cut(s) 350, 379, 382
ApoI RAATTY 1 cut(s) 544
AsiGI ACCGGT 1 cut(s) 127
Asp700I GAANNNNTTC 1 cut(s) 129
AspS9I GGNCC 2 cut(s) 4, 431
AsuC2I CCSGG 5 cut(s) 28, 42, 122, 243, 360
AsuHPI GGTGA 3 cut(s) 92, 133, 275
AxyI CCTNAGG 1 cut(s) 519
BbsI GAAGAC 1 cut(s) 60
BbvCI CCTCAGC 3 cut(s) 308, 417, 480
BbvI GCAGC 3 cut(s) 362, 369, 391
BccI CCATC 3 cut(s) 59, 152, 211
BceAI ACGGC 1 cut(s) 46
BciT130I CCWGG 1 cut(s) 8
BcnI CCSGG 5 cut(s) 28, 42, 122, 243, 360
BisI GCNGC 6 cut(s) 24, 296, 351, 380, 383, 386
BlsI GCNGC 6 cut(s) 25, 297, 352, 381, 384, 387
Bme1390I CCNGG 6 cut(s) 8, 28, 42, 122, 243, 360
BmgT120I GGNCC 2 cut(s) 4, 431
BmiI GGNNCC 3 cut(s) 126, 132, 433
BmrFI CCNGG 6 cut(s) 8, 28, 42, 122, 243, 360
BmsI GCATC 2 cut(s) 195, 412
BoxI GACNNNNGTC 1 cut(s) 92
BpiI GAAGAC 1 cut(s) 60
Bpu10I CCTNAGC 3 cut(s) 308, 417, 480
BpuMI CCSGG 5 cut(s) 28, 42, 122, 243, 360
BsaJI CCNNGG 3 cut(s) 120, 359, 435
BsaWI WCCGGW 4 cut(s) 109, 127, 133, 253
Bsc4I CCNNNNNNNGG 5 cut(s) 109, 127, 260, 329, 439
Bse118I RCCGGY 2 cut(s) 102, 127
Bse21I CCTNAGG 1 cut(s) 519
BseAI TCCGGA 1 cut(s) 133
BseBI CCWGG 1 cut(s) 8
BseDI CCNNGG 3 cut(s) 120, 359, 435
BseLI CCNNNNNNNGG 5 cut(s) 109, 127, 260, 329, 439
BseMII CTCAG 4 cut(s) 299, 408, 471, 510
BseXI GCAGC 3 cut(s) 362, 369, 391
BsgI GTGCAG 2 cut(s) 464, 518
Bsh1236I CGCG 1 cut(s) 186
BshFI GGCC 4 cut(s) 6, 106, 295, 432
BshTI ACCGGT 1 cut(s) 127
BslFI GGGAC 2 cut(s) 326, 376
BslI CCNNNNNNNGG 5 cut(s) 109, 127, 260, 329, 439
BsmFI GGGAC 2 cut(s) 326, 376
BsnI GGCC 4 cut(s) 6, 106, 295, 432
Bsp13I TCCGGA 1 cut(s) 133
Bsp143I GATC 4 cut(s) 138, 187, 228, 421
Bsp19I CCATGG 1 cut(s) 435
BspACI CCGC 4 cut(s) 24, 296, 385, 455
BspANI GGCC 4 cut(s) 6, 106, 295, 432
BspCNI CTCAG 4 cut(s) 300, 409, 472, 511
BspEI TCCGGA 1 cut(s) 133
BspFNI CGCG 1 cut(s) 186
BspLI GGNNCC 3 cut(s) 126, 132, 433
BspPI GGATC 3 cut(s) 182, 236, 429
BsrFI RCCGGY 2 cut(s) 102, 127
BssAI RCCGGY 2 cut(s) 102, 127
BssECI CCNNGG 3 cut(s) 120, 359, 435
BssMI GATC 4 cut(s) 138, 187, 228, 421
BssT1I CCWWGG 1 cut(s) 435
Bst2UI CCWGG 1 cut(s) 8
Bst4CI ACNGT 1 cut(s) 91
BstDEI CTNAG 4 cut(s) 308, 417, 480, 519
BstDSI CCRYGG 1 cut(s) 435
BstFNI CGCG 1 cut(s) 186
BstKTI GATC 4 cut(s) 141, 190, 231, 424
BstMBI GATC 4 cut(s) 138, 187, 228, 421
BstMWI GCNNNNNNNGC 3 cut(s) 32, 304, 385
BstNI CCWGG 1 cut(s) 8
BstNSI RCATGY 1 cut(s) 275
BstPAI GACNNNNGTC 1 cut(s) 92
BstSCI CCNGG 6 cut(s) 6, 26, 40, 120, 241, 358
BstUI CGCG 1 cut(s) 186
BstV1I GCAGC 3 cut(s) 362, 369, 391
BstV2I GAAGAC 1 cut(s) 60
Bsu36I CCTNAGG 1 cut(s) 519
BsuRI GGCC 4 cut(s) 6, 106, 295, 432
BtgI CCRYGG 1 cut(s) 435
BtsI GCAGTG 1 cut(s) 509
BtsIMutI CAGTG 1 cut(s) 509
Cfr10I RCCGGY 2 cut(s) 102, 127
Cfr13I GGNCC 2 cut(s) 4, 431
CspAI ACCGGT 1 cut(s) 127
CviAII CATG 2 cut(s) 272, 436
DdeI CTNAG 4 cut(s) 308, 417, 480, 519
DpnI GATC 4 cut(s) 140, 189, 230, 423
DpnII GATC 4 cut(s) 138, 187, 228, 421
Eco130I CCWWGG 1 cut(s) 435
Eco81I CCTNAGG 1 cut(s) 519
EcoRI GAATTC 1 cut(s) 544
EcoRII CCWGG 1 cut(s) 6
EcoT14I CCWWGG 1 cut(s) 435
ErhI CCWWGG 1 cut(s) 435
FaeI CATG 2 cut(s) 275, 439
FaiI YATR 4 cut(s) 273, 288, 395, 437
FaqI GGGAC 2 cut(s) 326, 376
FatI CATG 2 cut(s) 271, 435
Fnu4HI GCNGC 6 cut(s) 24, 296, 351, 380, 383, 386
Fsp4HI GCNGC 6 cut(s) 24, 296, 351, 380, 383, 386
GluI GCNGC 6 cut(s) 24, 296, 351, 380, 383, 386
HaeIII GGCC 4 cut(s) 6, 106, 295, 432
Hin1II CATG 2 cut(s) 275, 439
HinfI GANTC 6 cut(s) 152, 169, 200, 211, 326, 364
HphI GGTGA 3 cut(s) 92, 133, 275
Hpy166II GTNNAC 1 cut(s) 533
Hpy188I TCNGA 3 cut(s) 157, 216, 369
Hpy188III TCNNGA 3 cut(s) 134, 518, 549
Hpy8I GTNNAC 1 cut(s) 533
Hpy99I CGWCG 2 cut(s) 67, 95
HpyCH4III ACNGT 1 cut(s) 91
HpyCH4V TGCA 3 cut(s) 403, 445, 499
HpyF10VI GCNNNNNNNGC 3 cut(s) 32, 304, 385
HpyF3I CTNAG 4 cut(s) 308, 417, 480, 519
Hsp92II CATG 2 cut(s) 275, 439
Kpn2I TCCGGA 1 cut(s) 133
Kzo9I GATC 4 cut(s) 138, 187, 228, 421
LmnI GCTCC 1 cut(s) 358
Lsp1109I GCAGC 3 cut(s) 362, 369, 391
LweI GCATC 2 cut(s) 195, 412
MaeIII GTNAC 2 cut(s) 112, 507
MalI GATC 4 cut(s) 140, 189, 230, 423
MboI GATC 4 cut(s) 138, 187, 228, 421
MboII GAAGA 4 cut(s) 60, 63, 191, 550
MluCI AATT 2 cut(s) 450, 544
MlyI GAGTC 1 cut(s) 358
MroI TCCGGA 1 cut(s) 133
MroXI GAANNNNTTC 1 cut(s) 129
MslI CAYNNNNRTG 1 cut(s) 440
MspA1I CMGCKG 1 cut(s) 382
MspR9I CCNGG 6 cut(s) 8, 28, 42, 122, 243, 360
MvaI CCWGG 1 cut(s) 8
MvnI CGCG 1 cut(s) 186
MwoI GCNNNNNNNGC 3 cut(s) 32, 304, 385
NciI CCSGG 5 cut(s) 28, 42, 122, 243, 360
NcoI CCATGG 1 cut(s) 435
NdeII GATC 4 cut(s) 138, 187, 228, 421
NlaIII CATG 2 cut(s) 275, 439
NlaIV GGNNCC 3 cut(s) 126, 132, 433
NmeAIII GCCGAG 1 cut(s) 44
NmuCI GTSAC 2 cut(s) 112, 507
NspI RCATGY 1 cut(s) 275
PciI ACATGT 1 cut(s) 271
PdmI GAANNNNTTC 1 cut(s) 129
PfeI GAWTC 5 cut(s) 152, 169, 200, 211, 326
PinAI ACCGGT 1 cut(s) 127
PkrI GCNGC 6 cut(s) 25, 297, 352, 381, 384, 387
PleI GAGTC 1 cut(s) 358
PpsI GAGTC 1 cut(s) 358
PscI ACATGT 1 cut(s) 271
PshAI GACNNNNGTC 1 cut(s) 92
Psp6I CCWGG 1 cut(s) 6
PspGI CCWGG 1 cut(s) 6
PspN4I GGNNCC 3 cut(s) 126, 132, 433
PspPI GGNCC 2 cut(s) 4, 431
PvuII CAGCTG 1 cut(s) 382
RseI CAYNNNNRTG 1 cut(s) 440
SatI GCNGC 6 cut(s) 24, 296, 351, 380, 383, 386
Sau3AI GATC 4 cut(s) 138, 187, 228, 421
Sau96I GGNCC 2 cut(s) 4, 431
SchI GAGTC 1 cut(s) 358
ScrFI CCNGG 6 cut(s) 8, 28, 42, 122, 243, 360
SetI ASST 7 cut(s) 309, 338, 355, 384, 444, 481, 486
SfaNI GCATC 2 cut(s) 195, 412
SmiMI CAYNNNNRTG 1 cut(s) 440
Sse9I AATT 2 cut(s) 450, 544
SsiI CCGC 4 cut(s) 24, 296, 385, 455
StyD4I CCNGG 6 cut(s) 6, 26, 40, 120, 241, 358
StyI CCWWGG 1 cut(s) 435
TaaI ACNGT 1 cut(s) 91
TaqI TCGA 4 cut(s) 54, 198, 203, 236
TasI AATT 2 cut(s) 450, 544
TauI GCSGC 3 cut(s) 26, 298, 388
TfiI GAWTC 5 cut(s) 152, 169, 200, 211, 326
TscAI CASTG 1 cut(s) 516
TseFI GTSAC 2 cut(s) 112, 507
TseI GCWGC 3 cut(s) 350, 379, 382
Tsp45I GTSAC 2 cut(s) 112, 507
TspRI CASTG 1 cut(s) 516
XapI RAATTY 1 cut(s) 544
XceI RCATGY 1 cut(s) 275
XmnI GAANNNNTTC 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.