pycom16g14370

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0012114
Physical Location & Seq
Reverse (-)
10430669 .. 10431609
941 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g14370.1

Sequence Viewer

Length: 702 bp
ATGGGTCAGGCGCTGCGACGAGCTGCTGGAAGAACGCGACCCTCTTCGACCGTCGAAACGGCGTCGTCCAAACCGAAGACCGTCGTCGTCGATAAGCGGCCTCCTCTGGTTCCCCCCGAACGGGCGGAGATCTCCAAGGCCGGCGGCGCTATTGATTCTGTTAATTTACGGCGTCGTTTCGAATGTGGTTTGTTGGTTTCAGATGGCAGTGCAGGAACAGGAGGAGCCGCAGAAGCAGTCGAAAATGTGCTCGAAGAACGAGATCCAAATTACGACGCCATGCTCAATCAAATGGTGGGTAGAATCAAAGCAAAGCCCGGAGGCAAATTGGAGATGGGCGAGGCAAATGTGGTGGACAAGTATAAGAGGCCTCTACCTAAACTGAGGGATACGAAGCCAGATTCCGGGAGTTATGAGGAGAGGCCTGCTCCGCCGGGAACTCTGAATGTGGCACAGCTGCGCCACATTATTCTGCTGCATCAGGGCAAGGCCGAGGATCACAATGGCCGCATGGAGCCGGACCAAATTGCTGAGAAGTTCCGGGTTGATGTTGCTGAGGTTCGGAGCGATCTTGCGGTTTGTAGCACTGCCTCCGGAGGATGGCAGCGGCAAACAGAACAACAATCGCTGAAGAAGGCACAAATAGAGACAGCTTCTATCGACTATTCTCCTTCACTACTAGTTGGATTTTCCGTTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0240

Protein Analysis

234

Amino Acids

25.23

Weight (kDa)

8.49

Isoelectric Point (pI)

53.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012114)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G21400
fragaria_vesca FvH4_4g17860
malus_domestica MD13G1169900.v1.1 MD16G1171400.v1.1
prunus_persica Prupe.1G138200_v2.0.a1
pyrus_communis pycom13g14540 pycom16g14370
rosa_chinensis RchiOBHm_Chr4g0421971
rosa_laevigata RLG00000007649
rosa_multiflora Rmu_sc0003255.1_g000006 Rmu_sc0008440.1_g000014 Rmu_sc0012856.1_g000002
rosa_roxburghii Rroxscaffold_5G00364060
rosa_rugosa Rorug04G0176600
rosa_samantha Rh4AG235600 Rh4BG238900 Rh4CG250300 Rh4DG234400
rosa_wichuraiana Rw4G019910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 37
AccIII TCCGGA 1 cut(s) 593
AciI CCGC 8 cut(s) 97, 125, 144, 228, 431, 508, 575, 607
AclWI GGATC 2 cut(s) 257, 504
AcoI YGGCCR 1 cut(s) 505
AcuI CTGAAG 1 cut(s) 650
AcyI GRCGYC 3 cut(s) 62, 172, 276
AfiI CCNNNNNNNGG 4 cut(s) 120, 121, 404, 600
AgsI TTSAA 1 cut(s) 698
AhlI ACTAGT 1 cut(s) 679
AluBI AGCT 3 cut(s) 23, 457, 653
AluI AGCT 3 cut(s) 23, 457, 653
Alw21I GWGCWC 1 cut(s) 252
Alw26I GTCTC 1 cut(s) 641
AlwI GGATC 2 cut(s) 257, 504
AlwNI CAGNNNCTG 1 cut(s) 13
Aor13HI TCCGGA 1 cut(s) 593
AoxI GGCC 6 cut(s) 98, 138, 368, 422, 489, 505
ApeKI GCWGC 5 cut(s) 13, 23, 457, 475, 604
AspLEI GCGC 3 cut(s) 13, 149, 462
AspS9I GGNCC 1 cut(s) 520
AsuC2I CCSGG 4 cut(s) 318, 406, 435, 542
AsuII TTCGAA 1 cut(s) 180
AvaII GGWCC 1 cut(s) 520
BbsI GAAGAC 1 cut(s) 83
Bbv12I GWGCWC 1 cut(s) 252
BbvCI CCTCAGC 1 cut(s) 555
BbvI GCAGC 4 cut(s) 10, 444, 462, 616
BccI CCATC 3 cut(s) 197, 328, 594
BceAI ACGGC 2 cut(s) 75, 185
BciVI GTATCC 1 cut(s) 382
BcnI CCSGG 4 cut(s) 318, 406, 435, 542
BcoDI GTCTC 1 cut(s) 641
BcuI ACTAGT 1 cut(s) 679
BfaI CTAG 1 cut(s) 680
BfoI RGCGCY 2 cut(s) 14, 150
BfuI GTATCC 1 cut(s) 382
BglII AGATCT 1 cut(s) 129
Bme1390I CCNGG 4 cut(s) 318, 406, 435, 542
Bme18I GGWCC 1 cut(s) 520
BmgT120I GGNCC 1 cut(s) 520
BmiI GGNNCC 3 cut(s) 111, 226, 516
BmrFI CCNGG 4 cut(s) 318, 406, 435, 542
BmsI GCATC 1 cut(s) 487
BoxI GACNNNNGTC 1 cut(s) 83
BpiI GAAGAC 1 cut(s) 83
BplI GAGNNNNNCTC 2 cut(s) 412, 444
Bpu10I CCTNAGC 1 cut(s) 555
Bpu14I TTCGAA 1 cut(s) 180
BpuMI CCSGG 4 cut(s) 318, 406, 435, 542
BsaHI GRCGYC 3 cut(s) 62, 172, 276
BsaJI CCNNGG 2 cut(s) 135, 492
BsaWI WCCGGW 1 cut(s) 593
Bsc4I CCNNNNNNNGG 4 cut(s) 120, 121, 404, 600
Bse118I RCCGGY 1 cut(s) 140
BseAI TCCGGA 1 cut(s) 593
BseDI CCNNGG 2 cut(s) 135, 492
BseGI GGATG 1 cut(s) 605
BseLI CCNNNNNNNGG 4 cut(s) 120, 121, 404, 600
BseMII CTCAG 3 cut(s) 374, 522, 546
BseRI GAGGAG 3 cut(s) 93, 237, 431
BseXI GCAGC 4 cut(s) 10, 444, 462, 616
BsgI GTGCAG 1 cut(s) 231
Bsh1236I CGCG 1 cut(s) 37
Bsh1285I CGRYCG 1 cut(s) 51
BshFI GGCC 6 cut(s) 100, 140, 370, 424, 491, 507
BsiEI CGRYCG 1 cut(s) 51
BsiHKAI GWGCWC 1 cut(s) 252
BsiSI CCGG 7 cut(s) 141, 318, 405, 434, 518, 541, 594
BslI CCNNNNNNNGG 4 cut(s) 120, 121, 404, 600
BsmAI GTCTC 1 cut(s) 641
BsnI GGCC 6 cut(s) 100, 140, 370, 424, 491, 507
Bsp119I TTCGAA 1 cut(s) 180
Bsp1286I GDGCHC 1 cut(s) 252
Bsp13I TCCGGA 1 cut(s) 593
Bsp143I GATC 4 cut(s) 129, 262, 496, 568
BspACI CCGC 8 cut(s) 97, 125, 144, 228, 431, 508, 575, 607
BspANI GGCC 6 cut(s) 100, 140, 370, 424, 491, 507
BspCNI CTCAG 3 cut(s) 375, 523, 547
BspEI TCCGGA 1 cut(s) 593
BspFNI CGCG 1 cut(s) 37
BspLI GGNNCC 3 cut(s) 111, 226, 516
BspPI GGATC 2 cut(s) 257, 504
BspT104I TTCGAA 1 cut(s) 180
BsrFI RCCGGY 1 cut(s) 140
BssAI RCCGGY 1 cut(s) 140
BssECI CCNNGG 2 cut(s) 135, 492
BssMI GATC 4 cut(s) 129, 262, 496, 568
BssNI GRCGYC 3 cut(s) 62, 172, 276
BssT1I CCWWGG 1 cut(s) 135
Bst4CI ACNGT 2 cut(s) 52, 82
Bst6I CTCTTC 1 cut(s) 49
BstACI GRCGYC 3 cut(s) 62, 172, 276
BstBI TTCGAA 1 cut(s) 180
BstC8I GCNNGC 2 cut(s) 142, 426
BstDEI CTNAG 3 cut(s) 383, 531, 555
BstF5I GGATG 1 cut(s) 605
BstFNI CGCG 1 cut(s) 37
BstH2I RGCGCY 2 cut(s) 14, 150
BstHHI GCGC 3 cut(s) 13, 149, 462
BstKTI GATC 4 cut(s) 132, 265, 499, 571
BstMAI GTCTC 1 cut(s) 641
BstMBI GATC 4 cut(s) 129, 262, 496, 568
BstMCI CGRYCG 1 cut(s) 51
BstMWI GCNNNNNNNGC 3 cut(s) 146, 233, 430
BstPAI GACNNNNGTC 1 cut(s) 83
BstSCI CCNGG 4 cut(s) 316, 404, 433, 540
BstUI CGCG 1 cut(s) 37
BstV1I GCAGC 4 cut(s) 10, 444, 462, 616
BstV2I GAAGAC 1 cut(s) 83
BstX2I RGATCY 2 cut(s) 129, 262
BstYI RGATCY 2 cut(s) 129, 262
BsuI GTATCC 1 cut(s) 382
BsuRI GGCC 6 cut(s) 100, 140, 370, 424, 491, 507
BtsCI GGATG 1 cut(s) 605
BtsI GCAGTG 2 cut(s) 214, 585
BtsIMutI CAGTG 2 cut(s) 214, 585
Cac8I GCNNGC 2 cut(s) 142, 426
CaiI CAGNNNCTG 1 cut(s) 13
CfoI GCGC 3 cut(s) 13, 149, 462
Cfr10I RCCGGY 1 cut(s) 140
Cfr13I GGNCC 1 cut(s) 520
CseI GACGC 3 cut(s) 51, 161, 284
CspCI CAANNNNNGTGG 2 cut(s) 333, 368
CviAII CATG 2 cut(s) 280, 511
DdeI CTNAG 3 cut(s) 383, 531, 555
DpnI GATC 4 cut(s) 131, 264, 498, 570
DpnII GATC 4 cut(s) 129, 262, 496, 568
EaeI YGGCCR 1 cut(s) 505
Eam1104I CTCTTC 1 cut(s) 49
EarI CTCTTC 1 cut(s) 49
EciI GGCGGA 2 cut(s) 140, 420
Eco130I CCWWGG 1 cut(s) 135
Eco147I AGGCCT 2 cut(s) 370, 424
Eco47I GGWCC 1 cut(s) 520
Eco57I CTGAAG 1 cut(s) 650
EcoT14I CCWWGG 1 cut(s) 135
ErhI CCWWGG 1 cut(s) 135
FaeI CATG 2 cut(s) 283, 514
FaiI YATR 4 cut(s) 281, 363, 414, 512
FatI CATG 2 cut(s) 279, 510
FokI GGATG 1 cut(s) 612
FspBI CTAG 1 cut(s) 680
GlaI GCGC 3 cut(s) 12, 148, 461
HaeII RGCGCY 2 cut(s) 14, 150
HaeIII GGCC 6 cut(s) 100, 140, 370, 424, 491, 507
HapII CCGG 7 cut(s) 141, 318, 405, 434, 518, 541, 594
HgaI GACGC 3 cut(s) 51, 161, 284
HhaI GCGC 3 cut(s) 13, 149, 462
Hin1I GRCGYC 3 cut(s) 62, 172, 276
Hin1II CATG 2 cut(s) 283, 514
Hin6I GCGC 3 cut(s) 11, 147, 460
HinP1I GCGC 3 cut(s) 11, 147, 460
HinfI GANTC 3 cut(s) 155, 303, 401
HpaII CCGG 7 cut(s) 141, 318, 405, 434, 518, 541, 594
Hpy166II GTNNAC 1 cut(s) 355
Hpy188I TCNGA 3 cut(s) 202, 444, 564
Hpy188III TCNNGA 1 cut(s) 594
Hpy8I GTNNAC 1 cut(s) 355
Hpy99I CGWCG 8 cut(s) 21, 56, 67, 86, 89, 92, 177, 278
HpyAV CCTTC 2 cut(s) 628, 681
HpyCH4III ACNGT 2 cut(s) 52, 82
HpyCH4V TGCA 2 cut(s) 212, 478
HpyF10VI GCNNNNNNNGC 3 cut(s) 146, 233, 430
HpyF3I CTNAG 3 cut(s) 383, 531, 555
Hsp92I GRCGYC 3 cut(s) 62, 172, 276
Hsp92II CATG 2 cut(s) 283, 514
HspAI GCGC 3 cut(s) 11, 147, 460
Kpn2I TCCGGA 1 cut(s) 593
KroI GCCGGC 1 cut(s) 140
KroNI GCCGGC 1 cut(s) 142
Kzo9I GATC 4 cut(s) 129, 262, 496, 568
LmnI GCTCC 4 cut(s) 224, 433, 514, 564
Lsp1109I GCAGC 4 cut(s) 10, 444, 462, 616
LweI GCATC 1 cut(s) 487
MaeI CTAG 1 cut(s) 680
MalI GATC 4 cut(s) 131, 264, 498, 570
MboI GATC 4 cut(s) 129, 262, 496, 568
MboII GAAGA 5 cut(s) 36, 42, 88, 266, 643
MflI RGATCY 2 cut(s) 129, 262
MhlI GDGCHC 1 cut(s) 252
MluCI AATT 4 cut(s) 163, 268, 326, 525
MmeI TCCRAC 1 cut(s) 664
MroI TCCGGA 1 cut(s) 593
MroNI GCCGGC 1 cut(s) 140
MseI TTAA 1 cut(s) 162
MspA1I CMGCKG 2 cut(s) 457, 607
MspI CCGG 7 cut(s) 141, 318, 405, 434, 518, 541, 594
MspR9I CCNGG 4 cut(s) 318, 406, 435, 542
MvnI CGCG 1 cut(s) 37
MwoI GCNNNNNNNGC 3 cut(s) 146, 233, 430
NaeI GCCGGC 1 cut(s) 142
NciI CCSGG 4 cut(s) 318, 406, 435, 542
NdeII GATC 4 cut(s) 129, 262, 496, 568
NgoMIV GCCGGC 1 cut(s) 140
NlaIII CATG 2 cut(s) 283, 514
NlaIV GGNNCC 3 cut(s) 111, 226, 516
NmeAIII GCCGAG 1 cut(s) 517
NspV TTCGAA 1 cut(s) 180
PceI AGGCCT 2 cut(s) 370, 424
PcsI WCGNNNNNNNCGW 1 cut(s) 71
PdiI GCCGGC 1 cut(s) 142
PfeI GAWTC 3 cut(s) 155, 303, 401
PfoI TCCNGGA 1 cut(s) 404
PshAI GACNNNNGTC 1 cut(s) 83
PspN4I GGNNCC 3 cut(s) 111, 226, 516
PspPI GGNCC 1 cut(s) 520
PstNI CAGNNNCTG 1 cut(s) 13
PsuI RGATCY 2 cut(s) 129, 262
PvuII CAGCTG 1 cut(s) 457
SaqAI TTAA 1 cut(s) 162
Sau3AI GATC 4 cut(s) 129, 262, 496, 568
Sau96I GGNCC 1 cut(s) 520
ScrFI CCNGG 4 cut(s) 318, 406, 435, 542
SduI GDGCHC 1 cut(s) 252
SetI ASST 5 cut(s) 25, 379, 459, 561, 655
SfaNI GCATC 1 cut(s) 487
SfuI TTCGAA 1 cut(s) 180
SinI GGWCC 1 cut(s) 520
SpeI ACTAGT 1 cut(s) 679
Sse9I AATT 4 cut(s) 163, 268, 326, 525
SseBI AGGCCT 2 cut(s) 370, 424
SsiI CCGC 8 cut(s) 97, 125, 144, 228, 431, 508, 575, 607
SspMI CTAG 1 cut(s) 680
StuI AGGCCT 2 cut(s) 370, 424
StyD4I CCNGG 4 cut(s) 316, 404, 433, 540
StyI CCWWGG 1 cut(s) 135
TaaI ACNGT 2 cut(s) 52, 82
TaqI TCGA 7 cut(s) 47, 54, 90, 180, 240, 252, 660
TasI AATT 4 cut(s) 163, 268, 326, 525
TauI GCSGC 5 cut(s) 100, 147, 230, 510, 610
TfiI GAWTC 3 cut(s) 155, 303, 401
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TscAI CASTG 2 cut(s) 214, 592
TseI GCWGC 5 cut(s) 13, 23, 457, 475, 604
TspGWI ACGGA 1 cut(s) 682
TspRI CASTG 2 cut(s) 214, 592
VpaK11BI GGWCC 1 cut(s) 520
XspI CTAG 1 cut(s) 680
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.