Rorug04G0176600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0012114
Physical Location & Seq
Reverse (-)
31034522 .. 31036040
1519 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0176600.1

Sequence Viewer

Length: 1134 bp
ATGGGGAGCCTAAAATATTTGGTGGATCTCGAGTTGAGCCACAATCAACTTAGTGGTTCAATTCTGACAACATTGAGTTATTTGACCAACCTTACCACTCTTTATCTTCATTCAAATAATCTCTCTGGTACCATTCCAAAAGAGTTAGGGAACCTGAAATCTTTGGTGGATCTACAATTAAGCACCAATCAGCCCAGTGGTTCAATTTCGGCAACATTGGAGCTGAACACTAATCAACTCAGTGGTTCAATTTCAAAAACGTTGGGTGATCTTACCAACCTTACCACTCTCTATGTCCATTTAAATAATCTTTCCGGCACCATTCCAAGAGAGTTAGGAAGCCTGAAATCTTTGGTGGAACTATCCTTGTGCACCAATCATCTCTATGGTTCAATTTCGAAAACATTGGGTGATCTAACCAACCTTACCCTTCTCTATCTCTATTCAAATAATCTTTCTGGCACTATTCCTATGGAGATAGGGAACTTGAAATCTTTGGTGGATCTACAATTGAACATGAATCAACTCAGTGGTTCAATTCCGACAACAATAGGTGACTTTCAAAACTTGAAATTCTTATATCTCCTTGACAACCAACTTTCTGGCCTGATCCCTCACGAGATAGCAAATATCCAAAAGTTGACAGAATTGCAATTAAGTGGAAACAAATTTTCTGGTCATTTGCCCCAAAACATATGCCAAGGTAGATCACTCACATACTTTTCAGCTTCCTGCAATCATCTGAGTGGTCCAATCCCCATAAGCTTGAAAACCTGCACTAGCTTACTCAGAGTCCGTCTTGAAGAGAACCAATTGACAGGTAACGTATCCAAAGACTGGTGTGTTTATCCTAGTCTCAGTTTTATAGATTTGAGCAACAATCAACTTAATGGTGAAATCTCACCAAATTGGGTATTGTGCCCAAATTTAACACCCATAGGAATAGCTGGGAACAAACTTACTGGTTCTATACCAGCTGTGATTGGAAAGGCAACCCAAATTCATGAGCTGGATCTTTCTTCAAATGATTTAGTTGGGACAATTCCAAAGGAGTTTGGGGGATCGATTAACTTCAATAGTAAAGCTGAGGTTGGATGGCAACAAGCTTTCAGGTCGTGTCCCTTCATAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0240

Protein Analysis

377

Amino Acids

40.85

Weight (kDa)

6.05

Isoelectric Point (pI)

20.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 153 - 340 1.6e-08 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012114)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G21400
fragaria_vesca FvH4_4g17860
malus_domestica MD13G1169900.v1.1 MD16G1171400.v1.1
prunus_persica Prupe.1G138200_v2.0.a1
pyrus_communis pycom13g14540 pycom16g14370
rosa_chinensis RchiOBHm_Chr4g0421971
rosa_laevigata RLG00000007649
rosa_multiflora Rmu_sc0003255.1_g000006 Rmu_sc0008440.1_g000014 Rmu_sc0012856.1_g000002
rosa_roxburghii Rroxscaffold_5G00364060
rosa_rugosa Rorug04G0176600
rosa_samantha Rh4AG235600 Rh4BG238900 Rh4CG250300 Rh4DG234400
rosa_wichuraiana Rw4G019910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 782
Acc65I GGTACC 1 cut(s) 128
AccB1I GGYRCC 2 cut(s) 128, 317
AccB7I CCANNNNNTGG 1 cut(s) 837
AclI AACGTT 1 cut(s) 260
AclWI GGATC 6 cut(s) 33, 177, 510, 604, 1020, 1069
AcsI RAATTY 4 cut(s) 572, 668, 925, 999
AfaI GTAC 1 cut(s) 130
AfiI CCNNNNNNNGG 1 cut(s) 837
AluBI AGCT 9 cut(s) 223, 728, 765, 783, 947, 977, 1009, 1085, 1106
AluI AGCT 9 cut(s) 223, 728, 765, 783, 947, 977, 1009, 1085, 1106
Alw21I GWGCWC 1 cut(s) 374
Alw26I GTCTC 1 cut(s) 860
Alw44I GTGCAC 1 cut(s) 370
AlwI GGATC 6 cut(s) 33, 177, 510, 604, 1020, 1069
Ama87I CYCGRG 1 cut(s) 29
AoxI GGCC 1 cut(s) 604
ApaLI GTGCAC 1 cut(s) 370
ApoI RAATTY 4 cut(s) 572, 668, 925, 999
Asp718I GGTACC 1 cut(s) 128
AspS9I GGNCC 1 cut(s) 749
AsuHPI GGTGA 5 cut(s) 278, 422, 566, 894, 905
AsuII TTCGAA 1 cut(s) 398
AvaI CYCGRG 1 cut(s) 29
AvaII GGWCC 1 cut(s) 749
BaeGI GKGCMC 2 cut(s) 374, 923
BanI GGYRCC 2 cut(s) 128, 317
BauI CACGAG 1 cut(s) 617
Bbv12I GWGCWC 1 cut(s) 374
BbvCI CCTCAGC 1 cut(s) 1086
BccI CCATC 1 cut(s) 1089
BciVI GTATCC 1 cut(s) 838
BcoDI GTCTC 1 cut(s) 860
BfaI CTAG 2 cut(s) 780, 852
BfuAI ACCTGC 1 cut(s) 782
BfuI GTATCC 1 cut(s) 838
Bme18I GGWCC 1 cut(s) 749
BmeT110I CYCGRG 1 cut(s) 29
BmgT120I GGNCC 1 cut(s) 749
BmiI GGNNCC 4 cut(s) 8, 130, 152, 319
BmrI ACTGGG 1 cut(s) 189
BmuI ACTGGG 1 cut(s) 189
Bpu10I CCTNAGC 1 cut(s) 1086
Bpu14I TTCGAA 1 cut(s) 398
Bsa29I ATCGAT 1 cut(s) 1064
BsaJI CCNNGG 1 cut(s) 700
Bsc4I CCNNNNNNNGG 1 cut(s) 837
Bse1I ACTGG 3 cut(s) 195, 842, 967
BseCI ATCGAT 1 cut(s) 1064
BseDI CCNNGG 1 cut(s) 700
BseGI GGATG 1 cut(s) 1100
BseLI CCNNNNNNNGG 1 cut(s) 837
BseMII CTCAG 6 cut(s) 253, 541, 734, 802, 871, 1077
BseNI ACTGG 3 cut(s) 195, 842, 967
BseSI GKGCMC 2 cut(s) 374, 923
BseYI CCCAGC 1 cut(s) 947
BsgI GTGCAG 1 cut(s) 760
BshFI GGCC 1 cut(s) 606
BshNI GGYRCC 2 cut(s) 128, 317
BshVI ATCGAT 1 cut(s) 1064
BsiHKAI GWGCWC 1 cut(s) 374
BsiHKCI CYCGRG 1 cut(s) 29
BsiSI CCGG 1 cut(s) 315
BslFI GGGAC 2 cut(s) 1051, 1104
BslI CCNNNNNNNGG 1 cut(s) 837
BsmAI GTCTC 1 cut(s) 860
BsmFI GGGAC 2 cut(s) 1051, 1104
BsnI GGCC 1 cut(s) 606
BsoBI CYCGRG 1 cut(s) 29
Bsp119I TTCGAA 1 cut(s) 398
Bsp1286I GDGCHC 2 cut(s) 374, 923
Bsp143I GATC 9 cut(s) 25, 169, 268, 412, 502, 609, 707, 1012, 1061
BspANI GGCC 1 cut(s) 606
BspCNI CTCAG 6 cut(s) 252, 540, 735, 801, 870, 1078
BspDI ATCGAT 1 cut(s) 1064
BspHI TCATGA 1 cut(s) 1003
BspLI GGNNCC 4 cut(s) 8, 130, 152, 319
BspMI ACCTGC 1 cut(s) 782
BspPI GGATC 6 cut(s) 33, 177, 510, 604, 1020, 1069
BspT104I TTCGAA 1 cut(s) 398
BspT107I GGYRCC 2 cut(s) 128, 317
BsrI ACTGG 3 cut(s) 195, 842, 967
BssECI CCNNGG 1 cut(s) 700
BssMI GATC 9 cut(s) 25, 169, 268, 412, 502, 609, 707, 1012, 1061
BssSI CACGAG 1 cut(s) 617
BssT1I CCWWGG 1 cut(s) 700
Bst2BI CACGAG 1 cut(s) 617
Bst6I CTCTTC 1 cut(s) 798
BstBI TTCGAA 1 cut(s) 398
BstDEI CTNAG 7 cut(s) 50, 239, 527, 743, 788, 857, 1086
BstF5I GGATG 1 cut(s) 1100
BstKTI GATC 9 cut(s) 28, 172, 271, 415, 505, 612, 710, 1015, 1064
BstMAI GTCTC 1 cut(s) 860
BstMBI GATC 9 cut(s) 25, 169, 268, 412, 502, 609, 707, 1012, 1061
BstSLI GKGCMC 2 cut(s) 374, 923
BstX2I RGATCY 4 cut(s) 25, 169, 502, 1012
BstXI CCANNNNNNTGG 1 cut(s) 602
BstYI RGATCY 4 cut(s) 25, 169, 502, 1012
Bsu15I ATCGAT 1 cut(s) 1064
BsuI GTATCC 1 cut(s) 838
BsuRI GGCC 1 cut(s) 606
BsuTUI ATCGAT 1 cut(s) 1064
BtsCI GGATG 1 cut(s) 1100
BtsIMutI CAGTG 3 cut(s) 202, 247, 535
BveI ACCTGC 1 cut(s) 782
CciI TCATGA 1 cut(s) 1003
Cfr13I GGNCC 1 cut(s) 749
ClaI ATCGAT 1 cut(s) 1064
Csp6I GTAC 1 cut(s) 129
CviAII CATG 2 cut(s) 517, 1004
CviQI GTAC 1 cut(s) 129
DdeI CTNAG 7 cut(s) 50, 239, 527, 743, 788, 857, 1086
DpnI GATC 9 cut(s) 27, 171, 270, 414, 504, 611, 709, 1014, 1063
DpnII GATC 9 cut(s) 25, 169, 268, 412, 502, 609, 707, 1012, 1061
DraI TTTAAA 1 cut(s) 303
Eam1104I CTCTTC 1 cut(s) 798
EarI CTCTTC 1 cut(s) 798
Eco130I CCWWGG 1 cut(s) 700
Eco47I GGWCC 1 cut(s) 749
Eco88I CYCGRG 1 cut(s) 29
EcoT14I CCWWGG 1 cut(s) 700
ErhI CCWWGG 1 cut(s) 700
FaeI CATG 2 cut(s) 520, 1007
FaqI GGGAC 2 cut(s) 1051, 1104
FatI CATG 2 cut(s) 516, 1003
FauNDI CATATG 1 cut(s) 695
FokI GGATG 1 cut(s) 1107
FspBI CTAG 2 cut(s) 780, 852
GsaI CCCAGC 1 cut(s) 951
HaeIII GGCC 1 cut(s) 606
HapII CCGG 1 cut(s) 315
Hin1II CATG 2 cut(s) 520, 1007
HincII GTYRAC 1 cut(s) 642
HindII GTYRAC 1 cut(s) 642
HindIII AAGCTT 2 cut(s) 763, 1104
HinfI GANTC 2 cut(s) 520, 792
HpaII CCGG 1 cut(s) 315
HphI GGTGA 5 cut(s) 278, 422, 566, 894, 905
Hpy166II GTNNAC 2 cut(s) 372, 642
Hpy188I TCNGA 4 cut(s) 66, 543, 744, 791
Hpy188III TCNNGA 4 cut(s) 29, 617, 800, 1004
Hpy8I GTNNAC 2 cut(s) 372, 642
HpyAV CCTTC 2 cut(s) 440, 1132
HpyCH4IV ACGT 2 cut(s) 260, 825
HpyCH4V TGCA 4 cut(s) 372, 652, 735, 777
HpyF3I CTNAG 7 cut(s) 50, 239, 527, 743, 788, 857, 1086
HpySE526I ACGT 2 cut(s) 260, 825
Hsp92II CATG 2 cut(s) 520, 1007
KpnI GGTACC 1 cut(s) 132
Kzo9I GATC 9 cut(s) 25, 169, 268, 412, 502, 609, 707, 1012, 1061
LmnI GCTCC 2 cut(s) 6, 220
MaeI CTAG 2 cut(s) 780, 852
MaeII ACGT 2 cut(s) 260, 825
MaeIII GTNAC 2 cut(s) 554, 821
MalI GATC 9 cut(s) 27, 171, 270, 414, 504, 611, 709, 1014, 1063
MboI GATC 9 cut(s) 25, 169, 268, 412, 502, 609, 707, 1012, 1061
MboII GAAGA 3 cut(s) 98, 815, 1011
MfeI CAATTG 2 cut(s) 509, 812
MflI RGATCY 4 cut(s) 25, 169, 502, 1012
MhlI GDGCHC 2 cut(s) 374, 923
MlyI GAGTC 1 cut(s) 801
MmeI TCCRAC 2 cut(s) 566, 1072
MnlI CCTC 2 cut(s) 624, 1081
MseI TTAA 7 cut(s) 179, 302, 656, 888, 929, 1068, 1132
MslI CAYNNNNRTG 2 cut(s) 384, 744
MspA1I CMGCKG 1 cut(s) 977
MspI CCGG 1 cut(s) 315
MunI CAATTG 2 cut(s) 509, 812
NdeI CATATG 1 cut(s) 695
NdeII GATC 9 cut(s) 25, 169, 268, 412, 502, 609, 707, 1012, 1061
NlaIII CATG 2 cut(s) 520, 1007
NlaIV GGNNCC 4 cut(s) 8, 130, 152, 319
NmuCI GTSAC 1 cut(s) 554
NspV TTCGAA 1 cut(s) 398
PaeR7I CTCGAG 1 cut(s) 29
PagI TCATGA 1 cut(s) 1003
PfeI GAWTC 1 cut(s) 520
PflMI CCANNNNNTGG 1 cut(s) 837
PleI GAGTC 1 cut(s) 800
PpsI GAGTC 1 cut(s) 800
Psp1406I AACGTT 1 cut(s) 260
PspFI CCCAGC 1 cut(s) 947
PspN4I GGNNCC 4 cut(s) 8, 130, 152, 319
PspPI GGNCC 1 cut(s) 749
PsuI RGATCY 4 cut(s) 25, 169, 502, 1012
PvuII CAGCTG 1 cut(s) 977
RsaI GTAC 1 cut(s) 130
RsaNI GTAC 1 cut(s) 129
RseI CAYNNNNRTG 2 cut(s) 384, 744
SaqAI TTAA 7 cut(s) 179, 302, 656, 888, 929, 1068, 1132
Sau3AI GATC 9 cut(s) 25, 169, 268, 412, 502, 609, 707, 1012, 1061
Sau96I GGNCC 1 cut(s) 749
SchI GAGTC 1 cut(s) 801
SduI GDGCHC 2 cut(s) 374, 923
Sfr274I CTCGAG 1 cut(s) 29
SfuI TTCGAA 1 cut(s) 398
SinI GGWCC 1 cut(s) 749
SlaI CTCGAG 1 cut(s) 29
SmiI ATTTAAAT 1 cut(s) 303
SmiMI CAYNNNNRTG 2 cut(s) 384, 744
SmlI CTYRAG 1 cut(s) 29
SmoI CTYRAG 1 cut(s) 29
SspI AATATT 1 cut(s) 17
SspMI CTAG 2 cut(s) 780, 852
StyI CCWWGG 1 cut(s) 700
SwaI ATTTAAAT 1 cut(s) 303
TaiI ACGT 2 cut(s) 263, 828
TaqI TCGA 3 cut(s) 30, 398, 1064
TfiI GAWTC 1 cut(s) 520
Tru1I TTAA 7 cut(s) 179, 302, 656, 888, 929, 1068, 1132
Tru9I TTAA 7 cut(s) 179, 302, 656, 888, 929, 1068, 1132
TscAI CASTG 3 cut(s) 202, 247, 535
TseFI GTSAC 1 cut(s) 554
Tsp45I GTSAC 1 cut(s) 554
TspDTI ATGAA 4 cut(s) 98, 533, 992, 1114
TspGWI ACGGA 1 cut(s) 785
TspRI CASTG 3 cut(s) 202, 247, 535
Van91I CCANNNNNTGG 1 cut(s) 837
VneI GTGCAC 1 cut(s) 370
VpaK11BI GGWCC 1 cut(s) 749
XapI RAATTY 4 cut(s) 572, 668, 925, 999
XhoI CTCGAG 1 cut(s) 29
XspI CTAG 2 cut(s) 780, 852
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.