Rmu_sc0008440.1_g000014

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008440.1
OG0012114
Physical Location & Seq
Forward (+)
78689 .. 80312
1624 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008440.1_g000014.1.cds

Sequence Viewer

Length: 870 bp
atggtcaacctgagtttatcgatgctgacgtggcagtttggcgagctggcatggcttgatgatgtggctgctgacaggctgatgttgctggctgacgtggcagtgggctgcgtcaatggattcaccaaactgggccaagctttcttcttctgggccatgccgattgcttcttccctctgggttggattgcgctgccttgcttttgggctcgtctgggacagaggaagaattaaggtggaaggttcaggggtttttactccagttttgggatgcatatttccggttccgggaatctggaatcaagggactgatgttgacaaaatacggtggtcaaaggttgacttcaaaggtgcgaaccgggcagcgaaatttctgcttattctgagggccggtttggtatttttccggccggttttgggggcggcgccgccagttctggattcctggagttgggagcttcaagcagcaacaacacctaatgctgagaatctgcttgaagaacgcgatcccaagttcgattcaatgcttaatcagatggtgggtcggatcaaatcaaagcccggaggcaaacctgaaatgggtgaggcacatgtggtggagaagtacaagaggccactaccgaaactgagggatacgaaaccggattccggtaggtttgaggaaagagctgctcctccggggactctgaacgtggcgcagctgcggcacattatactattgcatcagggcaaggctgaggatcacaatggcccaatggaggtgcagagaattgcagacaagtttcgggttgatgttgcagaggttaagaggattgtgcaatttgtgtcactgcctcctcaggataccagtaaacagaagaaaaacccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0240

Protein Analysis

289

Amino Acids

32.21

Weight (kDa)

9.36

Isoelectric Point (pI)

28.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012114)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G21400
fragaria_vesca FvH4_4g17860
malus_domestica MD13G1169900.v1.1 MD16G1171400.v1.1
prunus_persica Prupe.1G138200_v2.0.a1
pyrus_communis pycom13g14540 pycom16g14370
rosa_chinensis RchiOBHm_Chr4g0421971
rosa_laevigata RLG00000007649
rosa_multiflora Rmu_sc0003255.1_g000006 Rmu_sc0008440.1_g000014 Rmu_sc0012856.1_g000002
rosa_roxburghii Rroxscaffold_5G00364060
rosa_rugosa Rorug04G0176600
rosa_samantha Rh4AG235600 Rh4BG238900 Rh4CG250300 Rh4DG234400
rosa_wichuraiana Rw4G019910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 424
AccII CGCG 1 cut(s) 504
AciI CCGC 3 cut(s) 422, 428, 703
AclWI GGATC 3 cut(s) 500, 554, 747
AcoI YGGCCR 1 cut(s) 407
AcsI RAATTY 1 cut(s) 368
AcyI GRCGYC 1 cut(s) 425
AfaI GTAC 1 cut(s) 605
AfiI CCNNNNNNNGG 7 cut(s) 266, 287, 416, 450, 578, 647, 757
AflIII ACRYGT 1 cut(s) 589
AgsI TTSAA 4 cut(s) 346, 461, 497, 522
AjiI CACGTC 2 cut(s) 30, 97
AjnI CCWGG 1 cut(s) 443
AluBI AGCT 5 cut(s) 46, 140, 457, 668, 700
AluI AGCT 5 cut(s) 46, 140, 457, 668, 700
AlwI GGATC 3 cut(s) 500, 554, 747
AoxI GGCC 6 cut(s) 133, 153, 387, 407, 611, 748
ApeKI GCWGC 8 cut(s) 68, 108, 192, 362, 464, 668, 697, 700
ApoI RAATTY 1 cut(s) 368
AspLEI GCGC 3 cut(s) 192, 427, 697
AspS9I GGNCC 4 cut(s) 133, 153, 387, 749
AsuC2I CCSGG 4 cut(s) 288, 359, 561, 678
AsuHPI GGTGA 2 cut(s) 115, 593
AxyI CCTNAGG 1 cut(s) 837
BanI GGYRCC 1 cut(s) 424
BanII GRGCYC 1 cut(s) 210
BbvCI CCTCAGC 1 cut(s) 735
BbvI GCAGC 8 cut(s) 55, 95, 179, 374, 476, 655, 687, 709
BccI CCATC 1 cut(s) 529
BcgI CGANNNNNNTGC 2 cut(s) 355, 389
BciT130I CCWGG 1 cut(s) 445
BciVI GTATCC 2 cut(s) 625, 835
BcnI CCSGG 4 cut(s) 288, 359, 561, 678
BfoI RGCGCY 1 cut(s) 428
BfuI GTATCC 2 cut(s) 625, 835
Bme1390I CCNGG 5 cut(s) 288, 359, 445, 561, 678
BmgBI CACGTC 2 cut(s) 30, 97
BmgT120I GGNCC 4 cut(s) 133, 153, 387, 749
BmiI GGNNCC 2 cut(s) 285, 426
BmrFI CCNGG 5 cut(s) 288, 359, 445, 561, 678
BmrI ACTGGG 1 cut(s) 140
BmsI GCATC 3 cut(s) 12, 260, 730
BmuI ACTGGG 1 cut(s) 140
BpmI CTGGAG 2 cut(s) 243, 466
Bpu10I CCTNAGC 1 cut(s) 735
BpuMI CCSGG 4 cut(s) 288, 359, 561, 678
Bsa29I ATCGAT 1 cut(s) 20
BsaHI GRCGYC 1 cut(s) 425
BsaJI CCNNGG 1 cut(s) 677
BsaWI WCCGGW 3 cut(s) 280, 640, 647
Bsc4I CCNNNNNNNGG 7 cut(s) 266, 287, 416, 450, 578, 647, 757
Bse118I RCCGGY 2 cut(s) 389, 409
Bse1I ACTGG 4 cut(s) 135, 260, 431, 846
Bse21I CCTNAGG 1 cut(s) 837
BseBI CCWGG 1 cut(s) 445
BseCI ATCGAT 1 cut(s) 20
BseDI CCNNGG 1 cut(s) 677
BseGI GGATG 1 cut(s) 275
BseLI CCNNNNNNNGG 7 cut(s) 266, 287, 416, 450, 578, 647, 757
BseMII CTCAG 5 cut(s) 374, 474, 617, 726, 851
BseNI ACTGG 4 cut(s) 135, 260, 431, 846
BseRI GAGGAG 2 cut(s) 663, 825
BseX3I CGGCCG 1 cut(s) 407
BseXI GCAGC 8 cut(s) 55, 95, 179, 374, 476, 655, 687, 709
BsgI GTGCAG 1 cut(s) 782
Bsh1236I CGCG 1 cut(s) 504
Bsh1285I CGRYCG 1 cut(s) 410
BshFI GGCC 6 cut(s) 135, 155, 389, 409, 613, 750
BshNI GGYRCC 1 cut(s) 424
BshVI ATCGAT 1 cut(s) 20
BsiEI CGRYCG 1 cut(s) 410
BslFI GGGAC 3 cut(s) 230, 319, 694
BslI CCNNNNNNNGG 7 cut(s) 266, 287, 416, 450, 578, 647, 757
BsmFI GGGAC 3 cut(s) 230, 319, 694
BsnI GGCC 6 cut(s) 135, 155, 389, 409, 613, 750
Bsp1286I GDGCHC 1 cut(s) 210
Bsp143I GATC 3 cut(s) 505, 546, 739
BspACI CCGC 3 cut(s) 422, 428, 703
BspANI GGCC 6 cut(s) 135, 155, 389, 409, 613, 750
BspCNI CTCAG 5 cut(s) 375, 475, 618, 727, 850
BspDI ATCGAT 1 cut(s) 20
BspFNI CGCG 1 cut(s) 504
BspLI GGNNCC 2 cut(s) 285, 426
BspPI GGATC 3 cut(s) 500, 554, 747
BspT107I GGYRCC 1 cut(s) 424
BsrFI RCCGGY 2 cut(s) 389, 409
BsrI ACTGG 4 cut(s) 135, 260, 431, 846
BssAI RCCGGY 2 cut(s) 389, 409
BssECI CCNNGG 1 cut(s) 677
BssMI GATC 3 cut(s) 505, 546, 739
BssNI GRCGYC 1 cut(s) 425
Bst2UI CCWGG 1 cut(s) 445
Bst4CI ACNGT 1 cut(s) 327
BstACI GRCGYC 1 cut(s) 425
BstC8I GCNNGC 3 cut(s) 44, 48, 90
BstDEI CTNAG 6 cut(s) 11, 383, 483, 626, 735, 837
BstF5I GGATG 1 cut(s) 275
BstFNI CGCG 1 cut(s) 504
BstH2I RGCGCY 1 cut(s) 428
BstHHI GCGC 3 cut(s) 192, 427, 697
BstKTI GATC 3 cut(s) 508, 549, 742
BstMBI GATC 3 cut(s) 505, 546, 739
BstMCI CGRYCG 1 cut(s) 410
BstMWI GCNNNNNNNGC 6 cut(s) 31, 52, 85, 98, 359, 703
BstNI CCWGG 1 cut(s) 445
BstNSI RCATGY 1 cut(s) 593
BstSCI CCNGG 5 cut(s) 286, 357, 443, 559, 676
BstUI CGCG 1 cut(s) 504
BstV1I GCAGC 8 cut(s) 55, 95, 179, 374, 476, 655, 687, 709
BstZI CGGCCG 1 cut(s) 407
Bsu15I ATCGAT 1 cut(s) 20
Bsu36I CCTNAGG 1 cut(s) 837
BsuI GTATCC 2 cut(s) 625, 835
BsuRI GGCC 6 cut(s) 135, 155, 389, 409, 613, 750
BsuTUI ATCGAT 1 cut(s) 20
BtrI CACGTC 2 cut(s) 30, 97
BtsCI GGATG 1 cut(s) 275
BtsI GCAGTG 2 cut(s) 108, 827
BtsIMutI CAGTG 2 cut(s) 108, 827
Cac8I GCNNGC 3 cut(s) 44, 48, 90
CfoI GCGC 3 cut(s) 192, 427, 697
Cfr10I RCCGGY 2 cut(s) 389, 409
Cfr13I GGNCC 4 cut(s) 133, 153, 387, 749
ClaI ATCGAT 1 cut(s) 20
CseI GACGC 1 cut(s) 100
Csp6I GTAC 1 cut(s) 604
CviAII CATG 3 cut(s) 51, 157, 590
CviQI GTAC 1 cut(s) 604
DdeI CTNAG 6 cut(s) 11, 383, 483, 626, 735, 837
DinI GGCGCC 1 cut(s) 426
DpnI GATC 3 cut(s) 507, 548, 741
DpnII GATC 3 cut(s) 505, 546, 739
EaeI YGGCCR 1 cut(s) 407
EagI CGGCCG 1 cut(s) 407
EclXI CGGCCG 1 cut(s) 407
Eco24I GRGCYC 1 cut(s) 210
Eco52I CGGCCG 1 cut(s) 407
Eco81I CCTNAGG 1 cut(s) 837
EcoRII CCWGG 1 cut(s) 443
EcoT22I ATGCAT 1 cut(s) 275
EcoT38I GRGCYC 1 cut(s) 210
EgeI GGCGCC 1 cut(s) 426
EheI GGCGCC 1 cut(s) 426
FaeI CATG 3 cut(s) 54, 160, 593
FaiI YATR 5 cut(s) 52, 158, 275, 591, 713
FalI AAGNNNNNCTT 2 cut(s) 326, 358
FaqI GGGAC 3 cut(s) 230, 319, 694
FatI CATG 3 cut(s) 50, 156, 589
FokI GGATG 1 cut(s) 282
FriOI GRGCYC 1 cut(s) 210
GlaI GCGC 3 cut(s) 191, 426, 696
GsuI CTGGAG 2 cut(s) 243, 466
HaeII RGCGCY 1 cut(s) 428
HaeIII GGCC 6 cut(s) 135, 155, 389, 409, 613, 750
HgaI GACGC 1 cut(s) 100
HhaI GCGC 3 cut(s) 192, 427, 697
Hin1I GRCGYC 1 cut(s) 425
Hin1II CATG 3 cut(s) 54, 160, 593
Hin6I GCGC 3 cut(s) 190, 425, 695
HinP1I GCGC 3 cut(s) 190, 425, 695
HincII GTYRAC 3 cut(s) 7, 316, 340
HindII GTYRAC 3 cut(s) 7, 316, 340
HindIII AAGCTT 1 cut(s) 138
HinfI GANTC 8 cut(s) 120, 291, 298, 440, 487, 518, 644, 682
HphI GGTGA 2 cut(s) 115, 593
Hpy166II GTNNAC 4 cut(s) 7, 316, 340, 851
Hpy188I TCNGA 4 cut(s) 384, 534, 546, 687
Hpy188III TCNNGA 3 cut(s) 295, 437, 839
Hpy8I GTNNAC 4 cut(s) 7, 316, 340, 851
HpyAV CCTTC 1 cut(s) 233
HpyCH4III ACNGT 1 cut(s) 327
HpyCH4IV ACGT 3 cut(s) 29, 96, 690
HpyCH4V TGCA 6 cut(s) 273, 721, 763, 773, 797, 817
HpyF10VI GCNNNNNNNGC 6 cut(s) 31, 52, 85, 98, 359, 703
HpyF3I CTNAG 6 cut(s) 11, 383, 483, 626, 735, 837
HpySE526I ACGT 3 cut(s) 29, 96, 690
Hsp92I GRCGYC 1 cut(s) 425
Hsp92II CATG 3 cut(s) 54, 160, 593
HspAI GCGC 3 cut(s) 190, 425, 695
KasI GGCGCC 1 cut(s) 424
Kzo9I GATC 3 cut(s) 505, 546, 739
LmnI GCTCC 2 cut(s) 454, 676
Lsp1109I GCAGC 8 cut(s) 55, 95, 179, 374, 476, 655, 687, 709
LweI GCATC 3 cut(s) 12, 260, 730
MaeII ACGT 3 cut(s) 29, 96, 690
MaeIII GTNAC 1 cut(s) 825
MalI GATC 3 cut(s) 507, 548, 741
MboI GATC 3 cut(s) 505, 546, 739
MboII GAAGA 6 cut(s) 136, 139, 162, 237, 509, 868
MhlI GDGCHC 1 cut(s) 210
MluCI AATT 4 cut(s) 228, 368, 768, 818
Mly113I GGCGCC 1 cut(s) 425
MlyI GAGTC 1 cut(s) 676
MmeI TCCRAC 2 cut(s) 163, 524
Mph1103I ATGCAT 1 cut(s) 275
MseI TTAA 3 cut(s) 231, 528, 804
MspA1I CMGCKG 1 cut(s) 700
MspR9I CCNGG 5 cut(s) 288, 359, 445, 561, 678
MvaI CCWGG 1 cut(s) 445
MvnI CGCG 1 cut(s) 504
MwoI GCNNNNNNNGC 6 cut(s) 31, 52, 85, 98, 359, 703
NarI GGCGCC 1 cut(s) 425
NciI CCSGG 4 cut(s) 288, 359, 561, 678
NdeII GATC 3 cut(s) 505, 546, 739
NlaIII CATG 3 cut(s) 54, 160, 593
NlaIV GGNNCC 2 cut(s) 285, 426
NmuCI GTSAC 1 cut(s) 825
NsiI ATGCAT 1 cut(s) 275
NspI RCATGY 1 cut(s) 593
PciI ACATGT 1 cut(s) 589
PcsI WCGNNNNNNNCGW 1 cut(s) 26
PfeI GAWTC 7 cut(s) 120, 291, 298, 440, 487, 518, 644
PfoI TCCNGGA 2 cut(s) 286, 443
PleI GAGTC 1 cut(s) 676
PluTI GGCGCC 1 cut(s) 428
PpsI GAGTC 1 cut(s) 676
PscI ACATGT 1 cut(s) 589
Psp6I CCWGG 1 cut(s) 443
PspGI CCWGG 1 cut(s) 443
PspN4I GGNNCC 2 cut(s) 285, 426
PspPI GGNCC 4 cut(s) 133, 153, 387, 749
PvuII CAGCTG 1 cut(s) 700
RsaI GTAC 1 cut(s) 605
RsaNI GTAC 1 cut(s) 604
SaqAI TTAA 3 cut(s) 231, 528, 804
Sau3AI GATC 3 cut(s) 505, 546, 739
Sau96I GGNCC 4 cut(s) 133, 153, 387, 749
SchI GAGTC 1 cut(s) 676
ScrFI CCNGG 5 cut(s) 288, 359, 445, 561, 678
SduI GDGCHC 1 cut(s) 210
SfaNI GCATC 3 cut(s) 12, 260, 730
SfoI GGCGCC 1 cut(s) 426
Sse9I AATT 4 cut(s) 228, 368, 768, 818
SsiI CCGC 3 cut(s) 422, 428, 703
SspDI GGCGCC 1 cut(s) 424
StyD4I CCNGG 5 cut(s) 286, 357, 443, 559, 676
TaaI ACNGT 1 cut(s) 327
TaiI ACGT 3 cut(s) 32, 99, 693
TaqI TCGA 2 cut(s) 20, 516
TasI AATT 4 cut(s) 228, 368, 768, 818
TatI WGTACW 1 cut(s) 603
TauI GCSGC 3 cut(s) 425, 430, 706
TfiI GAWTC 7 cut(s) 120, 291, 298, 440, 487, 518, 644
Tru1I TTAA 3 cut(s) 231, 528, 804
Tru9I TTAA 3 cut(s) 231, 528, 804
TscAI CASTG 2 cut(s) 108, 834
TseFI GTSAC 1 cut(s) 825
TseI GCWGC 8 cut(s) 68, 108, 192, 362, 464, 668, 697, 700
Tsp45I GTSAC 1 cut(s) 825
TspRI CASTG 2 cut(s) 108, 834
XapI RAATTY 1 cut(s) 368
XceI RCATGY 1 cut(s) 593
Zsp2I ATGCAT 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.