RLG00000007649

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0012114
Physical Location & Seq
Reverse (-)
19396220 .. 19397018
799 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007649

Sequence Viewer

Length: 585 bp
ATGGGCCAGGCACTTCGCCGAGCAGCCGGGAAAGCCCGACCCGGTTCCAGCATCGAAACGACGTCGTCGTCAGTACCCAAGACCATCGTCAATAAGCGGCCTCCGGTGACTTCCCCTGAACCGCCTCCTGAGATCACCAAACCCGGCGAGGAGGGTTTCGATTCCGATGGTAGTGCAGGAGCAGCAGCACCCAATGCTGAGAATCTGCTTGAAGAACGCGATCCCAAGTTCGATTCAATGCTTAATCAGATGGTGGGTCGGATCAAATCAAAGCCCGGAGGCAAACCTGAAATGGGTGAGGCACATGTGGTGGAGAAGTACAAGAGGCCACTACCGAAACTGAGGGATACGAAACCGGATTCCGGTAGGTTTGAGGAAAGAGCTGCTCCTCCGGGGACTCTGAACGTGGCGCAGCTGCGGCACATTATACTATTGCATCAGGGCAAGGCTGAGGATCACAATGGCCCAATGGAGGTGCAGAGAATTGCAGACAAGTTTCGGGTTGATGTTGCAGAGGTTAAGAGGATTGTGCAGTTTGTGTCACTGCCTCCCGAGGATACCGGTAAACAGAAGAAAGATCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0240

Protein Analysis

195

Amino Acids

21.14

Weight (kDa)

9.27

Isoelectric Point (pI)

53.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012114)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G21400
fragaria_vesca FvH4_4g17860
malus_domestica MD13G1169900.v1.1 MD16G1171400.v1.1
prunus_persica Prupe.1G138200_v2.0.a1
pyrus_communis pycom13g14540 pycom16g14370
rosa_chinensis RchiOBHm_Chr4g0421971
rosa_laevigata RLG00000007649
rosa_multiflora Rmu_sc0003255.1_g000006 Rmu_sc0008440.1_g000014 Rmu_sc0012856.1_g000002
rosa_roxburghii Rroxscaffold_5G00364060
rosa_rugosa Rorug04G0176600
rosa_samantha Rh4AG235600 Rh4BG238900 Rh4CG250300 Rh4DG234400
rosa_wichuraiana Rw4G019910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 67
AatII GACGTC 1 cut(s) 65
AccII CGCG 1 cut(s) 219
AciI CCGC 3 cut(s) 97, 122, 418
AclWI GGATC 4 cut(s) 215, 269, 462, 572
AcyI GRCGYC 1 cut(s) 62
AfaI GTAC 2 cut(s) 75, 320
AfiI CCNNNNNNNGG 3 cut(s) 293, 362, 472
AflIII ACRYGT 1 cut(s) 304
AgeI ACCGGT 1 cut(s) 560
AgsI TTSAA 2 cut(s) 212, 237
AjnI CCWGG 1 cut(s) 6
AluBI AGCT 2 cut(s) 383, 415
AluI AGCT 2 cut(s) 383, 415
AlwI GGATC 4 cut(s) 215, 269, 462, 572
Ama87I CYCGRG 1 cut(s) 551
AoxI GGCC 4 cut(s) 4, 98, 326, 463
ApeKI GCWGC 6 cut(s) 23, 182, 185, 383, 412, 415
AsiGI ACCGGT 1 cut(s) 560
AspLEI GCGC 1 cut(s) 412
AspS9I GGNCC 2 cut(s) 4, 464
AsuC2I CCSGG 5 cut(s) 28, 42, 144, 276, 393
AsuHPI GGTGA 3 cut(s) 118, 127, 308
AvaI CYCGRG 1 cut(s) 551
BbvCI CCTCAGC 1 cut(s) 450
BbvI GCAGC 6 cut(s) 35, 194, 197, 370, 402, 424
BccI CCATC 3 cut(s) 92, 161, 244
BcgI CGANNNNNNTGC 2 cut(s) 155, 189
BciT130I CCWGG 1 cut(s) 8
BciVI GTATCC 2 cut(s) 340, 550
BcnI CCSGG 5 cut(s) 28, 42, 144, 276, 393
BfuI GTATCC 2 cut(s) 340, 550
BisI GCNGC 8 cut(s) 24, 98, 183, 186, 384, 413, 416, 419
BlsI GCNGC 8 cut(s) 25, 99, 184, 187, 385, 414, 417, 420
Bme1390I CCNGG 6 cut(s) 8, 28, 42, 144, 276, 393
BmeT110I CYCGRG 1 cut(s) 551
BmgT120I GGNCC 2 cut(s) 4, 464
BmiI GGNNCC 1 cut(s) 46
BmrFI CCNGG 6 cut(s) 8, 28, 42, 144, 276, 393
BmsI GCATC 2 cut(s) 60, 445
BoxI GACNNNNGTC 1 cut(s) 86
Bpu10I CCTNAGC 1 cut(s) 450
BpuMI CCSGG 5 cut(s) 28, 42, 144, 276, 393
BsaHI GRCGYC 1 cut(s) 62
BsaJI CCNNGG 2 cut(s) 392, 552
BsaWI WCCGGW 4 cut(s) 103, 355, 362, 560
Bsc4I CCNNNNNNNGG 3 cut(s) 293, 362, 472
Bse118I RCCGGY 1 cut(s) 560
BseBI CCWGG 1 cut(s) 8
BseDI CCNNGG 2 cut(s) 392, 552
BseLI CCNNNNNNNGG 3 cut(s) 293, 362, 472
BseMII CTCAG 4 cut(s) 120, 189, 332, 441
BseRI GAGGAG 2 cut(s) 164, 378
BseXI GCAGC 6 cut(s) 35, 194, 197, 370, 402, 424
BsgI GTGCAG 3 cut(s) 195, 497, 551
Bsh1236I CGCG 1 cut(s) 219
BshFI GGCC 4 cut(s) 6, 100, 328, 465
BshTI ACCGGT 1 cut(s) 560
BsiHKCI CYCGRG 1 cut(s) 551
BsiSI CCGG 9 cut(s) 27, 42, 104, 144, 276, 356, 363, 392, 561
BslFI GGGAC 1 cut(s) 409
BslI CCNNNNNNNGG 3 cut(s) 293, 362, 472
BsmFI GGGAC 1 cut(s) 409
BsnI GGCC 4 cut(s) 6, 100, 328, 465
BsoBI CYCGRG 1 cut(s) 551
Bsp143I GATC 5 cut(s) 132, 220, 261, 454, 577
BspACI CCGC 3 cut(s) 97, 122, 418
BspANI GGCC 4 cut(s) 6, 100, 328, 465
BspCNI CTCAG 4 cut(s) 121, 190, 333, 442
BspFNI CGCG 1 cut(s) 219
BspLI GGNNCC 1 cut(s) 46
BspPI GGATC 4 cut(s) 215, 269, 462, 572
BsrFI RCCGGY 1 cut(s) 560
BssAI RCCGGY 1 cut(s) 560
BssECI CCNNGG 2 cut(s) 392, 552
BssMI GATC 5 cut(s) 132, 220, 261, 454, 577
BssNI GRCGYC 1 cut(s) 62
Bst2UI CCWGG 1 cut(s) 8
BstACI GRCGYC 1 cut(s) 62
BstAPI GCANNNNNTGC 1 cut(s) 194
BstDEI CTNAG 4 cut(s) 129, 198, 341, 450
BstFNI CGCG 1 cut(s) 219
BstHHI GCGC 1 cut(s) 412
BstKTI GATC 5 cut(s) 135, 223, 264, 457, 580
BstMBI GATC 5 cut(s) 132, 220, 261, 454, 577
BstMWI GCNNNNNNNGC 4 cut(s) 32, 182, 194, 418
BstNI CCWGG 1 cut(s) 8
BstNSI RCATGY 1 cut(s) 308
BstPAI GACNNNNGTC 1 cut(s) 86
BstSCI CCNGG 6 cut(s) 6, 26, 40, 142, 274, 391
BstUI CGCG 1 cut(s) 219
BstV1I GCAGC 6 cut(s) 35, 194, 197, 370, 402, 424
BstX2I RGATCY 1 cut(s) 577
BstYI RGATCY 1 cut(s) 577
BsuI GTATCC 2 cut(s) 340, 550
BsuRI GGCC 4 cut(s) 6, 100, 328, 465
BtsI GCAGTG 1 cut(s) 542
BtsIMutI CAGTG 1 cut(s) 542
CfoI GCGC 1 cut(s) 412
Cfr10I RCCGGY 1 cut(s) 560
Cfr13I GGNCC 2 cut(s) 4, 464
Csp6I GTAC 2 cut(s) 74, 319
CspAI ACCGGT 1 cut(s) 560
CviAII CATG 1 cut(s) 305
CviQI GTAC 2 cut(s) 74, 319
DdeI CTNAG 4 cut(s) 129, 198, 341, 450
DpnI GATC 5 cut(s) 134, 222, 263, 456, 579
DpnII GATC 5 cut(s) 132, 220, 261, 454, 577
DrdI GACNNNNNNGTC 1 cut(s) 67
DseDI GACNNNNNNGTC 1 cut(s) 67
Eco88I CYCGRG 1 cut(s) 551
EcoRII CCWGG 1 cut(s) 6
FaeI CATG 1 cut(s) 308
FaiI YATR 2 cut(s) 306, 428
FaqI GGGAC 1 cut(s) 409
FatI CATG 1 cut(s) 304
Fnu4HI GCNGC 8 cut(s) 24, 98, 183, 186, 384, 413, 416, 419
Fsp4HI GCNGC 8 cut(s) 24, 98, 183, 186, 384, 413, 416, 419
GlaI GCGC 1 cut(s) 411
GluI GCNGC 8 cut(s) 24, 98, 183, 186, 384, 413, 416, 419
HaeIII GGCC 4 cut(s) 6, 100, 328, 465
HapII CCGG 9 cut(s) 27, 42, 104, 144, 276, 356, 363, 392, 561
HhaI GCGC 1 cut(s) 412
Hin1I GRCGYC 1 cut(s) 62
Hin1II CATG 1 cut(s) 308
Hin6I GCGC 1 cut(s) 410
HinP1I GCGC 1 cut(s) 410
HinfI GANTC 5 cut(s) 161, 202, 233, 359, 397
HpaII CCGG 9 cut(s) 27, 42, 104, 144, 276, 356, 363, 392, 561
HphI GGTGA 3 cut(s) 118, 127, 308
Hpy166II GTNNAC 1 cut(s) 566
Hpy188I TCNGA 4 cut(s) 166, 249, 261, 402
Hpy188III TCNNGA 2 cut(s) 128, 551
Hpy8I GTNNAC 1 cut(s) 566
Hpy99I CGWCG 3 cut(s) 64, 67, 70
HpyCH4IV ACGT 2 cut(s) 62, 405
HpyCH4V TGCA 6 cut(s) 176, 436, 478, 488, 512, 532
HpyF10VI GCNNNNNNNGC 4 cut(s) 32, 182, 194, 418
HpyF3I CTNAG 4 cut(s) 129, 198, 341, 450
HpySE526I ACGT 2 cut(s) 62, 405
Hsp92I GRCGYC 1 cut(s) 62
Hsp92II CATG 1 cut(s) 308
HspAI GCGC 1 cut(s) 410
Kzo9I GATC 5 cut(s) 132, 220, 261, 454, 577
LmnI GCTCC 2 cut(s) 179, 391
Lsp1109I GCAGC 6 cut(s) 35, 194, 197, 370, 402, 424
LweI GCATC 2 cut(s) 60, 445
MaeII ACGT 2 cut(s) 62, 405
MaeIII GTNAC 2 cut(s) 106, 540
MalI GATC 5 cut(s) 134, 222, 263, 456, 579
MboI GATC 5 cut(s) 132, 220, 261, 454, 577
MboII GAAGA 2 cut(s) 224, 583
MflI RGATCY 1 cut(s) 577
MluCI AATT 1 cut(s) 483
MlyI GAGTC 1 cut(s) 391
MmeI TCCRAC 1 cut(s) 239
MseI TTAA 2 cut(s) 243, 519
MspA1I CMGCKG 1 cut(s) 415
MspI CCGG 9 cut(s) 27, 42, 104, 144, 276, 356, 363, 392, 561
MspR9I CCNGG 6 cut(s) 8, 28, 42, 144, 276, 393
MvaI CCWGG 1 cut(s) 8
MvnI CGCG 1 cut(s) 219
MwoI GCNNNNNNNGC 4 cut(s) 32, 182, 194, 418
NciI CCSGG 5 cut(s) 28, 42, 144, 276, 393
NdeII GATC 5 cut(s) 132, 220, 261, 454, 577
NlaIII CATG 1 cut(s) 308
NlaIV GGNNCC 1 cut(s) 46
NmeAIII GCCGAG 1 cut(s) 44
NmuCI GTSAC 2 cut(s) 106, 540
NspI RCATGY 1 cut(s) 308
PciI ACATGT 1 cut(s) 304
PcsI WCGNNNNNNNCGW 1 cut(s) 65
PfeI GAWTC 4 cut(s) 161, 202, 233, 359
PflFI GACNNNGTC 1 cut(s) 64
PinAI ACCGGT 1 cut(s) 560
PkrI GCNGC 8 cut(s) 25, 99, 184, 187, 385, 414, 417, 420
PleI GAGTC 1 cut(s) 391
PpsI GAGTC 1 cut(s) 391
PscI ACATGT 1 cut(s) 304
PshAI GACNNNNGTC 1 cut(s) 86
Psp6I CCWGG 1 cut(s) 6
PspGI CCWGG 1 cut(s) 6
PspN4I GGNNCC 1 cut(s) 46
PspPI GGNCC 2 cut(s) 4, 464
PsuI RGATCY 1 cut(s) 577
PsyI GACNNNGTC 1 cut(s) 64
PvuII CAGCTG 1 cut(s) 415
RsaI GTAC 2 cut(s) 75, 320
RsaNI GTAC 2 cut(s) 74, 319
SaqAI TTAA 2 cut(s) 243, 519
SatI GCNGC 8 cut(s) 24, 98, 183, 186, 384, 413, 416, 419
Sau3AI GATC 5 cut(s) 132, 220, 261, 454, 577
Sau96I GGNCC 2 cut(s) 4, 464
SchI GAGTC 1 cut(s) 391
ScrFI CCNGG 6 cut(s) 8, 28, 42, 144, 276, 393
SetI ASST 8 cut(s) 65, 289, 371, 385, 408, 417, 477, 519
SfaNI GCATC 2 cut(s) 60, 445
Sse9I AATT 1 cut(s) 483
SsiI CCGC 3 cut(s) 97, 122, 418
StyD4I CCNGG 6 cut(s) 6, 26, 40, 142, 274, 391
TaiI ACGT 2 cut(s) 65, 408
TaqI TCGA 3 cut(s) 54, 159, 231
TasI AATT 1 cut(s) 483
TatI WGTACW 1 cut(s) 318
TauI GCSGC 2 cut(s) 100, 421
TfiI GAWTC 4 cut(s) 161, 202, 233, 359
Tru1I TTAA 2 cut(s) 243, 519
Tru9I TTAA 2 cut(s) 243, 519
TscAI CASTG 1 cut(s) 549
TseFI GTSAC 2 cut(s) 106, 540
TseI GCWGC 6 cut(s) 23, 182, 185, 383, 412, 415
Tsp45I GTSAC 2 cut(s) 106, 540
TspRI CASTG 1 cut(s) 549
Tth111I GACNNNGTC 1 cut(s) 64
XceI RCATGY 1 cut(s) 308
ZraI GACGTC 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.