Rh4AG235600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0012114
Physical Location & Seq
Forward (+)
54038091 .. 54038887
797 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG235600.1

Sequence Viewer

Length: 585 bp
ATGGGCCAGGCACTTCGCCGAGCAGCCGGGAAAACCCGACCCGGTTCCAGCATCGAAACGACGTCGTCGTCAATACCCAAGACCATCGTCAATAAGCGGCCTCCGGTGACTCCCCCCGAACCGCCTCCTGAGATCACCAAACCCGGCGAGGAGGGTTTCGATTCCGATGGTAGTGCAGGAGCAGCGGCACCTAATGCTGAGAATCTGCTTGAAGAACGCGATCCCAAGTTCGATTCAATGCTTAATCAGATGGTGGGTCGGATCAAATCAAAGCCCGGAGGCAAACCTGAAATGGGCGAGGCACATGTGGTGGAGAAGTACAAGAGGCCACTACCGAAACTGAGGGATACGAAACCGGATTCCGGTAGGTTTGAGGAAAGAGCTGCTCCTCCGGGGACTCTGAACGTGGCGCAGCTGCGGCACATTATACTATTGCATCAGGGCAAGGCTGAGGATCACAATGGCCCAATGGAGGTGCAGAGAATTGCAGACAAGTTTCGGGTTGATGTTGCAGAGGTCAAGAGGATTGTGCAGTTTGTGTCACTGCCTCCTGTGGATACCAGTAAACAGAAGAAAAACCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0240

Protein Analysis

194

Amino Acids

21.19

Weight (kDa)

9.55

Isoelectric Point (pI)

50.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012114)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G21400
fragaria_vesca FvH4_4g17860
malus_domestica MD13G1169900.v1.1 MD16G1171400.v1.1
prunus_persica Prupe.1G138200_v2.0.a1
pyrus_communis pycom13g14540 pycom16g14370
rosa_chinensis RchiOBHm_Chr4g0421971
rosa_laevigata RLG00000007649
rosa_multiflora Rmu_sc0003255.1_g000006 Rmu_sc0008440.1_g000014 Rmu_sc0012856.1_g000002
rosa_roxburghii Rroxscaffold_5G00364060
rosa_rugosa Rorug04G0176600
rosa_samantha Rh4AG235600 Rh4BG238900 Rh4CG250300 Rh4DG234400
rosa_wichuraiana Rw4G019910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 67
AatII GACGTC 1 cut(s) 65
AccB1I GGYRCC 1 cut(s) 187
AccII CGCG 1 cut(s) 219
AciI CCGC 4 cut(s) 97, 122, 185, 418
AclWI GGATC 3 cut(s) 215, 269, 462
AcyI GRCGYC 1 cut(s) 62
AfaI GTAC 1 cut(s) 320
AfiI CCNNNNNNNGG 3 cut(s) 293, 362, 472
AflIII ACRYGT 1 cut(s) 304
AgsI TTSAA 2 cut(s) 212, 237
AjnI CCWGG 1 cut(s) 6
AluBI AGCT 2 cut(s) 383, 415
AluI AGCT 2 cut(s) 383, 415
AlwI GGATC 3 cut(s) 215, 269, 462
AoxI GGCC 4 cut(s) 4, 98, 326, 463
ApeKI GCWGC 5 cut(s) 23, 182, 383, 412, 415
AspLEI GCGC 1 cut(s) 412
AspS9I GGNCC 2 cut(s) 4, 464
AsuC2I CCSGG 5 cut(s) 28, 42, 144, 276, 393
AsuHPI GGTGA 2 cut(s) 118, 127
BanI GGYRCC 1 cut(s) 187
BbvCI CCTCAGC 1 cut(s) 450
BbvI GCAGC 5 cut(s) 35, 194, 370, 402, 424
BccI CCATC 3 cut(s) 92, 161, 244
BcgI CGANNNNNNTGC 2 cut(s) 155, 189
BciT130I CCWGG 1 cut(s) 8
BciVI GTATCC 2 cut(s) 340, 550
BcnI CCSGG 5 cut(s) 28, 42, 144, 276, 393
BfuI GTATCC 2 cut(s) 340, 550
BisI GCNGC 8 cut(s) 24, 98, 183, 186, 384, 413, 416, 419
BlsI GCNGC 8 cut(s) 25, 99, 184, 187, 385, 414, 417, 420
Bme1390I CCNGG 6 cut(s) 8, 28, 42, 144, 276, 393
BmgT120I GGNCC 2 cut(s) 4, 464
BmiI GGNNCC 2 cut(s) 46, 189
BmrFI CCNGG 6 cut(s) 8, 28, 42, 144, 276, 393
BmsI GCATC 2 cut(s) 60, 445
BoxI GACNNNNGTC 1 cut(s) 86
Bpu10I CCTNAGC 1 cut(s) 450
BpuMI CCSGG 5 cut(s) 28, 42, 144, 276, 393
BsaHI GRCGYC 1 cut(s) 62
BsaJI CCNNGG 1 cut(s) 392
BsaWI WCCGGW 3 cut(s) 103, 355, 362
Bsc4I CCNNNNNNNGG 3 cut(s) 293, 362, 472
Bse1I ACTGG 1 cut(s) 561
BseBI CCWGG 1 cut(s) 8
BseDI CCNNGG 1 cut(s) 392
BseLI CCNNNNNNNGG 3 cut(s) 293, 362, 472
BseMII CTCAG 4 cut(s) 120, 189, 332, 441
BseNI ACTGG 1 cut(s) 561
BseRI GAGGAG 2 cut(s) 164, 378
BseXI GCAGC 5 cut(s) 35, 194, 370, 402, 424
BsgI GTGCAG 3 cut(s) 195, 497, 551
Bsh1236I CGCG 1 cut(s) 219
BshFI GGCC 4 cut(s) 6, 100, 328, 465
BshNI GGYRCC 1 cut(s) 187
BsiSI CCGG 8 cut(s) 27, 42, 104, 144, 276, 356, 363, 392
BslFI GGGAC 1 cut(s) 409
BslI CCNNNNNNNGG 3 cut(s) 293, 362, 472
BsmFI GGGAC 1 cut(s) 409
BsnI GGCC 4 cut(s) 6, 100, 328, 465
Bsp143I GATC 4 cut(s) 132, 220, 261, 454
BspACI CCGC 4 cut(s) 97, 122, 185, 418
BspANI GGCC 4 cut(s) 6, 100, 328, 465
BspCNI CTCAG 4 cut(s) 121, 190, 333, 442
BspFNI CGCG 1 cut(s) 219
BspLI GGNNCC 2 cut(s) 46, 189
BspPI GGATC 3 cut(s) 215, 269, 462
BspT107I GGYRCC 1 cut(s) 187
BsrI ACTGG 1 cut(s) 561
BssECI CCNNGG 1 cut(s) 392
BssMI GATC 4 cut(s) 132, 220, 261, 454
BssNI GRCGYC 1 cut(s) 62
Bst2UI CCWGG 1 cut(s) 8
BstACI GRCGYC 1 cut(s) 62
BstAPI GCANNNNNTGC 1 cut(s) 194
BstDEI CTNAG 4 cut(s) 129, 198, 341, 450
BstFNI CGCG 1 cut(s) 219
BstHHI GCGC 1 cut(s) 412
BstKTI GATC 4 cut(s) 135, 223, 264, 457
BstMBI GATC 4 cut(s) 132, 220, 261, 454
BstMWI GCNNNNNNNGC 3 cut(s) 182, 194, 418
BstNI CCWGG 1 cut(s) 8
BstNSI RCATGY 1 cut(s) 308
BstPAI GACNNNNGTC 1 cut(s) 86
BstSCI CCNGG 6 cut(s) 6, 26, 40, 142, 274, 391
BstUI CGCG 1 cut(s) 219
BstV1I GCAGC 5 cut(s) 35, 194, 370, 402, 424
BsuI GTATCC 2 cut(s) 340, 550
BsuRI GGCC 4 cut(s) 6, 100, 328, 465
BtsI GCAGTG 1 cut(s) 542
BtsIMutI CAGTG 1 cut(s) 542
CfoI GCGC 1 cut(s) 412
Cfr13I GGNCC 2 cut(s) 4, 464
Csp6I GTAC 1 cut(s) 319
CviAII CATG 1 cut(s) 305
CviJI RGCY 9 cut(s) 6, 26, 100, 274, 328, 383, 415, 449, 465
CviKI_1 RGCY 9 cut(s) 6, 26, 100, 274, 328, 383, 415, 449, 465
CviQI GTAC 1 cut(s) 319
DdeI CTNAG 4 cut(s) 129, 198, 341, 450
DpnI GATC 4 cut(s) 134, 222, 263, 456
DpnII GATC 4 cut(s) 132, 220, 261, 454
DrdI GACNNNNNNGTC 1 cut(s) 67
DseDI GACNNNNNNGTC 1 cut(s) 67
EcoRII CCWGG 1 cut(s) 6
FaeI CATG 1 cut(s) 308
FaiI YATR 2 cut(s) 306, 428
FaqI GGGAC 1 cut(s) 409
FatI CATG 1 cut(s) 304
Fnu4HI GCNGC 8 cut(s) 24, 98, 183, 186, 384, 413, 416, 419
Fsp4HI GCNGC 8 cut(s) 24, 98, 183, 186, 384, 413, 416, 419
GlaI GCGC 1 cut(s) 411
GluI GCNGC 8 cut(s) 24, 98, 183, 186, 384, 413, 416, 419
HaeIII GGCC 4 cut(s) 6, 100, 328, 465
HapII CCGG 8 cut(s) 27, 42, 104, 144, 276, 356, 363, 392
HhaI GCGC 1 cut(s) 412
Hin1I GRCGYC 1 cut(s) 62
Hin1II CATG 1 cut(s) 308
Hin6I GCGC 1 cut(s) 410
HinP1I GCGC 1 cut(s) 410
HinfI GANTC 6 cut(s) 109, 161, 202, 233, 359, 397
HpaII CCGG 8 cut(s) 27, 42, 104, 144, 276, 356, 363, 392
HphI GGTGA 2 cut(s) 118, 127
Hpy166II GTNNAC 1 cut(s) 566
Hpy188I TCNGA 4 cut(s) 166, 249, 261, 402
Hpy188III TCNNGA 2 cut(s) 128, 520
Hpy8I GTNNAC 1 cut(s) 566
Hpy99I CGWCG 3 cut(s) 64, 67, 70
HpyCH4IV ACGT 2 cut(s) 62, 405
HpyCH4V TGCA 6 cut(s) 176, 436, 478, 488, 512, 532
HpyF10VI GCNNNNNNNGC 3 cut(s) 182, 194, 418
HpyF3I CTNAG 4 cut(s) 129, 198, 341, 450
HpySE526I ACGT 2 cut(s) 62, 405
Hsp92I GRCGYC 1 cut(s) 62
Hsp92II CATG 1 cut(s) 308
HspAI GCGC 1 cut(s) 410
Kzo9I GATC 4 cut(s) 132, 220, 261, 454
LmnI GCTCC 2 cut(s) 179, 391
Lsp1109I GCAGC 5 cut(s) 35, 194, 370, 402, 424
LweI GCATC 2 cut(s) 60, 445
MaeII ACGT 2 cut(s) 62, 405
MaeIII GTNAC 2 cut(s) 106, 540
MalI GATC 4 cut(s) 134, 222, 263, 456
MboI GATC 4 cut(s) 132, 220, 261, 454
MboII GAAGA 2 cut(s) 224, 583
MluCI AATT 1 cut(s) 483
MlyI GAGTC 2 cut(s) 103, 391
MmeI TCCRAC 1 cut(s) 239
MseI TTAA 1 cut(s) 243
MspA1I CMGCKG 2 cut(s) 185, 415
MspI CCGG 8 cut(s) 27, 42, 104, 144, 276, 356, 363, 392
MspR9I CCNGG 6 cut(s) 8, 28, 42, 144, 276, 393
MvaI CCWGG 1 cut(s) 8
MvnI CGCG 1 cut(s) 219
MwoI GCNNNNNNNGC 3 cut(s) 182, 194, 418
NciI CCSGG 5 cut(s) 28, 42, 144, 276, 393
NdeII GATC 4 cut(s) 132, 220, 261, 454
NlaIII CATG 1 cut(s) 308
NlaIV GGNNCC 2 cut(s) 46, 189
NmeAIII GCCGAG 1 cut(s) 44
NmuCI GTSAC 2 cut(s) 106, 540
NspI RCATGY 1 cut(s) 308
PciI ACATGT 1 cut(s) 304
PcsI WCGNNNNNNNCGW 1 cut(s) 65
PfeI GAWTC 4 cut(s) 161, 202, 233, 359
PflFI GACNNNGTC 1 cut(s) 64
PkrI GCNGC 8 cut(s) 25, 99, 184, 187, 385, 414, 417, 420
PleI GAGTC 2 cut(s) 103, 391
PpsI GAGTC 2 cut(s) 103, 391
PscI ACATGT 1 cut(s) 304
PshAI GACNNNNGTC 1 cut(s) 86
Psp6I CCWGG 1 cut(s) 6
PspGI CCWGG 1 cut(s) 6
PspN4I GGNNCC 2 cut(s) 46, 189
PspPI GGNCC 2 cut(s) 4, 464
PsyI GACNNNGTC 1 cut(s) 64
PvuII CAGCTG 1 cut(s) 415
RsaI GTAC 1 cut(s) 320
RsaNI GTAC 1 cut(s) 319
SaqAI TTAA 1 cut(s) 243
SatI GCNGC 8 cut(s) 24, 98, 183, 186, 384, 413, 416, 419
Sau3AI GATC 4 cut(s) 132, 220, 261, 454
Sau96I GGNCC 2 cut(s) 4, 464
SchI GAGTC 2 cut(s) 103, 391
ScrFI CCNGG 6 cut(s) 8, 28, 42, 144, 276, 393
SetI ASST 9 cut(s) 65, 193, 289, 371, 385, 408, 417, 477, 519
SfaNI GCATC 2 cut(s) 60, 445
Sse9I AATT 1 cut(s) 483
SsiI CCGC 4 cut(s) 97, 122, 185, 418
StyD4I CCNGG 6 cut(s) 6, 26, 40, 142, 274, 391
TaiI ACGT 2 cut(s) 65, 408
TaqI TCGA 3 cut(s) 54, 159, 231
TasI AATT 1 cut(s) 483
TatI WGTACW 1 cut(s) 318
TauI GCSGC 3 cut(s) 100, 188, 421
TfiI GAWTC 4 cut(s) 161, 202, 233, 359
Tru1I TTAA 1 cut(s) 243
Tru9I TTAA 1 cut(s) 243
TscAI CASTG 1 cut(s) 549
TseFI GTSAC 2 cut(s) 106, 540
TseI GCWGC 5 cut(s) 23, 182, 383, 412, 415
Tsp45I GTSAC 2 cut(s) 106, 540
TspRI CASTG 1 cut(s) 549
Tth111I GACNNNGTC 1 cut(s) 64
XceI RCATGY 1 cut(s) 308
ZraI GACGTC 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.