pycom13g14540

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0012114
Physical Location & Seq
Reverse (-)
10522651 .. 10523501
851 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g14540.2

Sequence Viewer

Length: 579 bp
ATGGGTCAGGCGCTTCGCCGAGCTGCTGGAAGAACGCGATCCACTTCGACCGTCGAGACGACGTCGTCAAAACCAAAGACCGTCGTCGTCGATCATCGGCCTCCTCCGGTTCCCCCCGAACGGCCCGAGATCTCCAAGGTCGGCGGCGCTATTGATTCTGATGGCAGTGCAGGAACAGGAGGAGCAGTCAAAAATGTGCTTGAAGAGCGAGATCCAAATTACGACGCCATGCTCAATCAAATGGTGGGTAGGATCAAATCAAAGCCTGGAGGCAAATTGGAAATGGGTGAGGCATTTGTGGTGGAAAAGTATAAGAGGCCTCTACCAAAACTGAGGGATACGAAACCCGATTCCGGCAGTTATGAGGAGAGGCCTACTCCGCCGGGGACTCTGAATGTAGCACAGCTGCGCCACATCATCCTGCTGCATCAGGGCAAGGCTGAGGATCACAATGGCCGCATGGAGCCGGACCAAATTGCTGAAAAGTTCCGGGTTGATGTTGCCGAGGTTCGGAGGATCTTGCAGTTTGTATCACTGCCTCCGGAGGATAGCAGCGGCAATCAGAAGAACAATCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0240

Protein Analysis

193

Amino Acids

21.07

Weight (kDa)

9.48

Isoelectric Point (pI)

49.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012114)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G21400
fragaria_vesca FvH4_4g17860
malus_domestica MD13G1169900.v1.1 MD16G1171400.v1.1
prunus_persica Prupe.1G138200_v2.0.a1
pyrus_communis pycom13g14540 pycom16g14370
rosa_chinensis RchiOBHm_Chr4g0421971
rosa_laevigata RLG00000007649
rosa_multiflora Rmu_sc0003255.1_g000006 Rmu_sc0008440.1_g000014 Rmu_sc0012856.1_g000002
rosa_roxburghii Rroxscaffold_5G00364060
rosa_rugosa Rorug04G0176600
rosa_samantha Rh4AG235600 Rh4BG238900 Rh4CG250300 Rh4DG234400
rosa_wichuraiana Rw4G019910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 64
AatII GACGTC 1 cut(s) 65
AccII CGCG 1 cut(s) 37
AccIII TCCGGA 1 cut(s) 541
AciI CCGC 4 cut(s) 144, 380, 457, 555
AclWI GGATC 5 cut(s) 33, 206, 260, 453, 524
AcoI YGGCCR 1 cut(s) 454
AcyI GRCGYC 2 cut(s) 62, 225
AfiI CCNNNNNNNGG 3 cut(s) 120, 353, 510
AgsI TTSAA 1 cut(s) 203
AjnI CCWGG 1 cut(s) 265
AluBI AGCT 2 cut(s) 23, 406
AluI AGCT 2 cut(s) 23, 406
Alw26I GTCTC 1 cut(s) 50
AlwI GGATC 5 cut(s) 33, 206, 260, 453, 524
Ama87I CYCGRG 1 cut(s) 125
Aor13HI TCCGGA 1 cut(s) 541
AoxI GGCC 5 cut(s) 98, 122, 317, 371, 454
ApeKI GCWGC 4 cut(s) 23, 406, 424, 552
AspLEI GCGC 3 cut(s) 13, 149, 411
AspS9I GGNCC 2 cut(s) 123, 469
AsuC2I CCSGG 2 cut(s) 384, 491
AsuHPI GGTGA 1 cut(s) 299
AvaI CYCGRG 1 cut(s) 125
AvaII GGWCC 1 cut(s) 469
BbvCI CCTCAGC 1 cut(s) 441
BbvI GCAGC 4 cut(s) 10, 393, 411, 564
BccI CCATC 1 cut(s) 155
BceAI ACGGC 1 cut(s) 137
BciT130I CCWGG 1 cut(s) 267
BciVI GTATCC 1 cut(s) 331
BcnI CCSGG 2 cut(s) 384, 491
BcoDI GTCTC 1 cut(s) 50
BfoI RGCGCY 2 cut(s) 14, 150
BfuI GTATCC 1 cut(s) 331
BglII AGATCT 1 cut(s) 129
BisI GCNGC 7 cut(s) 24, 145, 407, 425, 457, 553, 556
BlsI GCNGC 7 cut(s) 25, 146, 408, 426, 458, 554, 557
Bme1390I CCNGG 3 cut(s) 267, 384, 491
Bme18I GGWCC 1 cut(s) 469
BmeT110I CYCGRG 1 cut(s) 125
BmgT120I GGNCC 2 cut(s) 123, 469
BmiI GGNNCC 2 cut(s) 111, 465
BmrFI CCNGG 3 cut(s) 267, 384, 491
BmsI GCATC 1 cut(s) 436
BoxI GACNNNNGTC 1 cut(s) 83
BplI GAGNNNNNCTC 2 cut(s) 361, 393
BpmI CTGGAG 1 cut(s) 288
Bpu10I CCTNAGC 1 cut(s) 441
BpuMI CCSGG 2 cut(s) 384, 491
BsaHI GRCGYC 2 cut(s) 62, 225
BsaJI CCNNGG 3 cut(s) 135, 383, 504
BsaWI WCCGGW 2 cut(s) 106, 541
BsaXI ACNNNNNCTCC 2 cut(s) 171, 201
Bsc4I CCNNNNNNNGG 3 cut(s) 120, 353, 510
BseAI TCCGGA 1 cut(s) 541
BseBI CCWGG 1 cut(s) 267
BseDI CCNNGG 3 cut(s) 135, 383, 504
BseGI GGATG 1 cut(s) 417
BseLI CCNNNNNNNGG 3 cut(s) 120, 353, 510
BseMII CTCAG 2 cut(s) 323, 432
BseRI GAGGAG 3 cut(s) 93, 195, 380
BseXI GCAGC 4 cut(s) 10, 393, 411, 564
BsgI GTGCAG 1 cut(s) 189
Bsh1236I CGCG 1 cut(s) 37
Bsh1285I CGRYCG 1 cut(s) 51
BshFI GGCC 5 cut(s) 100, 124, 319, 373, 456
BsiEI CGRYCG 1 cut(s) 51
BsiHKCI CYCGRG 1 cut(s) 125
BsiSI CCGG 6 cut(s) 107, 354, 383, 467, 490, 542
BslFI GGGAC 1 cut(s) 400
BslI CCNNNNNNNGG 3 cut(s) 120, 353, 510
BsmAI GTCTC 1 cut(s) 50
BsmBI CGTCTC 1 cut(s) 50
BsmFI GGGAC 1 cut(s) 400
BsnI GGCC 5 cut(s) 100, 124, 319, 373, 456
BsoBI CYCGRG 1 cut(s) 125
Bsp13I TCCGGA 1 cut(s) 541
Bsp143I GATC 7 cut(s) 38, 91, 129, 211, 252, 445, 516
BspACI CCGC 4 cut(s) 144, 380, 457, 555
BspANI GGCC 5 cut(s) 100, 124, 319, 373, 456
BspCNI CTCAG 2 cut(s) 324, 433
BspEI TCCGGA 1 cut(s) 541
BspFNI CGCG 1 cut(s) 37
BspLI GGNNCC 2 cut(s) 111, 465
BspPI GGATC 5 cut(s) 33, 206, 260, 453, 524
BspQI GCTCTTC 1 cut(s) 198
BssECI CCNNGG 3 cut(s) 135, 383, 504
BssMI GATC 7 cut(s) 38, 91, 129, 211, 252, 445, 516
BssNI GRCGYC 2 cut(s) 62, 225
BssT1I CCWWGG 1 cut(s) 135
Bst2UI CCWGG 1 cut(s) 267
Bst4CI ACNGT 2 cut(s) 52, 82
Bst6I CTCTTC 1 cut(s) 198
BstACI GRCGYC 2 cut(s) 62, 225
BstDEI CTNAG 2 cut(s) 332, 441
BstF5I GGATG 1 cut(s) 417
BstFNI CGCG 1 cut(s) 37
BstH2I RGCGCY 2 cut(s) 14, 150
BstHHI GCGC 3 cut(s) 13, 149, 411
BstKTI GATC 7 cut(s) 41, 94, 132, 214, 255, 448, 519
BstMAI GTCTC 1 cut(s) 50
BstMBI GATC 7 cut(s) 38, 91, 129, 211, 252, 445, 516
BstMCI CGRYCG 1 cut(s) 51
BstMWI GCNNNNNNNGC 2 cut(s) 205, 379
BstNI CCWGG 1 cut(s) 267
BstPAI GACNNNNGTC 1 cut(s) 83
BstSCI CCNGG 3 cut(s) 265, 382, 489
BstUI CGCG 1 cut(s) 37
BstV1I GCAGC 4 cut(s) 10, 393, 411, 564
BstX2I RGATCY 3 cut(s) 129, 211, 516
BstYI RGATCY 3 cut(s) 129, 211, 516
BsuI GTATCC 1 cut(s) 331
BsuRI GGCC 5 cut(s) 100, 124, 319, 373, 456
BtsCI GGATG 1 cut(s) 417
BtsI GCAGTG 2 cut(s) 172, 533
BtsIMutI CAGTG 2 cut(s) 172, 533
CfoI GCGC 3 cut(s) 13, 149, 411
Cfr13I GGNCC 2 cut(s) 123, 469
CseI GACGC 1 cut(s) 233
CviAII CATG 2 cut(s) 229, 460
DdeI CTNAG 2 cut(s) 332, 441
DpnI GATC 7 cut(s) 40, 93, 131, 213, 254, 447, 518
DpnII GATC 7 cut(s) 38, 91, 129, 211, 252, 445, 516
DrdI GACNNNNNNGTC 1 cut(s) 64
DseDI GACNNNNNNGTC 1 cut(s) 64
EaeI YGGCCR 1 cut(s) 454
Eam1104I CTCTTC 1 cut(s) 198
EarI CTCTTC 1 cut(s) 198
EciI GGCGGA 1 cut(s) 369
Eco130I CCWWGG 1 cut(s) 135
Eco147I AGGCCT 2 cut(s) 319, 373
Eco47I GGWCC 1 cut(s) 469
Eco88I CYCGRG 1 cut(s) 125
EcoRII CCWGG 1 cut(s) 265
EcoT14I CCWWGG 1 cut(s) 135
ErhI CCWWGG 1 cut(s) 135
Esp3I CGTCTC 1 cut(s) 50
FaeI CATG 2 cut(s) 232, 463
FaiI YATR 4 cut(s) 230, 312, 363, 461
FaqI GGGAC 1 cut(s) 400
FatI CATG 2 cut(s) 228, 459
Fnu4HI GCNGC 7 cut(s) 24, 145, 407, 425, 457, 553, 556
FokI GGATG 1 cut(s) 404
Fsp4HI GCNGC 7 cut(s) 24, 145, 407, 425, 457, 553, 556
GlaI GCGC 3 cut(s) 12, 148, 410
GluI GCNGC 7 cut(s) 24, 145, 407, 425, 457, 553, 556
GsuI CTGGAG 1 cut(s) 288
HaeII RGCGCY 2 cut(s) 14, 150
HaeIII GGCC 5 cut(s) 100, 124, 319, 373, 456
HapII CCGG 6 cut(s) 107, 354, 383, 467, 490, 542
HgaI GACGC 1 cut(s) 233
HhaI GCGC 3 cut(s) 13, 149, 411
Hin1I GRCGYC 2 cut(s) 62, 225
Hin1II CATG 2 cut(s) 232, 463
Hin6I GCGC 3 cut(s) 11, 147, 409
HinP1I GCGC 3 cut(s) 11, 147, 409
HinfI GANTC 3 cut(s) 155, 350, 388
HpaII CCGG 6 cut(s) 107, 354, 383, 467, 490, 542
HphI GGTGA 1 cut(s) 299
Hpy188I TCNGA 4 cut(s) 160, 393, 513, 564
Hpy188III TCNNGA 2 cut(s) 55, 542
Hpy99I CGWCG 7 cut(s) 56, 64, 67, 86, 89, 92, 227
HpyCH4III ACNGT 2 cut(s) 52, 82
HpyCH4IV ACGT 1 cut(s) 62
HpyCH4V TGCA 3 cut(s) 170, 427, 523
HpyF10VI GCNNNNNNNGC 2 cut(s) 205, 379
HpyF3I CTNAG 2 cut(s) 332, 441
HpySE526I ACGT 1 cut(s) 62
Hsp92I GRCGYC 2 cut(s) 62, 225
Hsp92II CATG 2 cut(s) 232, 463
HspAI GCGC 3 cut(s) 11, 147, 409
Kpn2I TCCGGA 1 cut(s) 541
Kzo9I GATC 7 cut(s) 38, 91, 129, 211, 252, 445, 516
LguI GCTCTTC 1 cut(s) 198
LmnI GCTCC 2 cut(s) 182, 463
Lsp1109I GCAGC 4 cut(s) 10, 393, 411, 564
LweI GCATC 1 cut(s) 436
MaeII ACGT 1 cut(s) 62
MalI GATC 7 cut(s) 40, 93, 131, 213, 254, 447, 518
MboI GATC 7 cut(s) 38, 91, 129, 211, 252, 445, 516
MboII GAAGA 3 cut(s) 42, 215, 577
MflI RGATCY 3 cut(s) 129, 211, 516
MluCI AATT 3 cut(s) 217, 275, 474
MlyI GAGTC 1 cut(s) 382
MroI TCCGGA 1 cut(s) 541
MspA1I CMGCKG 2 cut(s) 406, 555
MspI CCGG 6 cut(s) 107, 354, 383, 467, 490, 542
MspR9I CCNGG 3 cut(s) 267, 384, 491
MvaI CCWGG 1 cut(s) 267
MvnI CGCG 1 cut(s) 37
MwoI GCNNNNNNNGC 2 cut(s) 205, 379
NciI CCSGG 2 cut(s) 384, 491
NdeII GATC 7 cut(s) 38, 91, 129, 211, 252, 445, 516
NlaIII CATG 2 cut(s) 232, 463
NlaIV GGNNCC 2 cut(s) 111, 465
NmeAIII GCCGAG 2 cut(s) 44, 529
PceI AGGCCT 2 cut(s) 319, 373
PciSI GCTCTTC 1 cut(s) 198
PfeI GAWTC 2 cut(s) 155, 350
PflFI GACNNNGTC 2 cut(s) 61, 64
PkrI GCNGC 7 cut(s) 25, 146, 408, 426, 458, 554, 557
PleI GAGTC 1 cut(s) 382
PpsI GAGTC 1 cut(s) 382
PshAI GACNNNNGTC 1 cut(s) 83
Psp6I CCWGG 1 cut(s) 265
PspGI CCWGG 1 cut(s) 265
PspN4I GGNNCC 2 cut(s) 111, 465
PspPI GGNCC 2 cut(s) 123, 469
PsuI RGATCY 3 cut(s) 129, 211, 516
PsyI GACNNNGTC 2 cut(s) 61, 64
PvuII CAGCTG 1 cut(s) 406
SapI GCTCTTC 1 cut(s) 198
SatI GCNGC 7 cut(s) 24, 145, 407, 425, 457, 553, 556
Sau3AI GATC 7 cut(s) 38, 91, 129, 211, 252, 445, 516
Sau96I GGNCC 2 cut(s) 123, 469
SchI GAGTC 1 cut(s) 382
ScrFI CCNGG 3 cut(s) 267, 384, 491
SetI ASST 5 cut(s) 25, 65, 141, 408, 510
SfaNI GCATC 1 cut(s) 436
SinI GGWCC 1 cut(s) 469
Sse9I AATT 3 cut(s) 217, 275, 474
SseBI AGGCCT 2 cut(s) 319, 373
SsiI CCGC 4 cut(s) 144, 380, 457, 555
StuI AGGCCT 2 cut(s) 319, 373
StyD4I CCNGG 3 cut(s) 265, 382, 489
StyI CCWWGG 1 cut(s) 135
TaaI ACNGT 2 cut(s) 52, 82
TaiI ACGT 1 cut(s) 65
TaqI TCGA 3 cut(s) 47, 54, 90
TasI AATT 3 cut(s) 217, 275, 474
TauI GCSGC 3 cut(s) 147, 459, 558
TfiI GAWTC 2 cut(s) 155, 350
TscAI CASTG 2 cut(s) 172, 540
TseI GCWGC 4 cut(s) 23, 406, 424, 552
TspRI CASTG 2 cut(s) 172, 540
Tth111I GACNNNGTC 2 cut(s) 61, 64
VpaK11BI GGWCC 1 cut(s) 469
ZraI GACGTC 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.