Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005855

Physical Location & Seq

Genomic Coordinates Reverse (-)

7688434 .. 7691567

Gene Structure 3134 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G21820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1422 bp

ATGGATTCCGTTTACAAAACCGACGAAAACTTCGCCGCGGATGTCGCCGCTCTTCTTGCTCCGCTTCCAACTCCCCAACTTCAGGAGTATTTCAACAAGCTTATAACTAGTAGAAGATGCAATGGAATTGAAGTGAAAAACAATGGAACCATTGGAAAAGGTGTTTATGCAAATTCAGAGTTTGACGAAGATGAACTCATTTTGAAAGATGAGATTCTTGTTGGTATCCAACATTCTTCCAACAAGGTGGATTGTTTAGTTTGCAGTTTTTGTTTCCGGTTCATTGGATCAATCGAGAAACAAATCGGCAGGAAACTCTATTTCAAGAATCTCGGTGTCTCTGGTTGTTGTGACGACGATTCATCCGAAGAAGATGAATGTGTGAAGTACAATGGAAATGAGGAACAATGTGGTGGAAGCAGTTCAAGCCATAATACTCTTCCAGAAGGAGTTGTTAGTTCTTTGATGAATGGTGAAATGGCATTGCCGCATACTGATAAGTTTCCTTTGCCGTCGCCTCTTTCGTGTCCTGGAGGATGTCAGGAGGCTTTCTACTGCAGTGAATCATGCGCAGCGGCAGATTGGGAGAGTTCTCATTCCTTACTTTGTACTGGTGAGAGGTCTGAATCAATATCTAGAGAGGCGCTTGGAGAGTTTATTAAACATGCTAATGATACCAATGATATTTTTCTCCTGGCTGCGAAGGCAATCGCCTTTACCATTCTAAGGTACAGGAAACTGAAAGCAGAACATGTGGACAAAAAAGCGAAACAGAGTGAGCCAAAGCAGTCGCTTCTCTTGGAAGCATGGAAACCAGTATCGATTGGATACAAAAGAAGGTGGTGGGACTGCATTGCATTGCCAGATGATGTTGATCCTACTGATGAAGGAGCCTTCAGGATGCAAATAAAGAACCTTGCGTGTACGTCTTTGGAGCTCCTGAAGATAGCCATATTTGACAAAGAATGTGAAGCCCTGTTCTCCCTCGAAATCTATGGGAATATCATCGGCATGTTTGAGCTGAATAACCTAGACTTGGTGGTAGCATCACCAGTAGAGGACTATTTCTTGTATATTGATGATCTTCCTGATGCAGAAAAGGAAGAAACCGAGGAAATCACAAGACCGTTTCTAGATGCTCTTGGTGATGAGTACTCGGACTGTTGCCAAGGAACGGCCTTCTTCCCTCTGCAAAGCTGTATGAACCATTCTTGTTGCCCTAATGCAAAAGCCTTCAAAAGAGAAGAGGACAGAGACGGACAAGCAGTGATAATTGCATTAAGACGCATCAGCAAGAACGAAGAGGTGACGATTTCATATATCGACGAGGAGCTTCCATACAAAGAGAGACAAGCATTACTTGCAGACTATGGTTTCAGCTGCAAGTGCTCTAAGTGTCTTGAAGATTCTTCATCAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SET zf-MYND

Protein Analysis

473

Amino Acids

52.8

Weight (kDa)

4.61

Isoelectric Point (pI)

57.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-MYND	PF01753	174 - 203	1.1e-06	MYND finger
SET	PF00856	227 - 440	1.6e-09	SET domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005855)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21820
fragaria_vesca	FvH4_6g43540 FvH4_6g43540 FvH4_6g43540 FvH4_6g43540 FvH4_6g43540 FvH4_6g43540 FvH4_6g43540 FvH4_6g43540
malus_domestica	MD09G1105100.v1.1
prunus_persica	Prupe.3G220400_v2.0.a1
pyrus_communis	pycom09g02820
rosa_chinensis	RchiOBHm_Chr2g0160071
rosa_laevigata	RLG00000021195
rosa_multiflora	Rmu_sc0002023.1_g000014
rosa_roxburghii	Rroxscaffold_2G00090050
rosa_rugosa	Rorug02G0480300 Rorug02G0480400 Rorug02G0480400 Rorug02G0480500 Rorug02G0480600 Rorug02G0480700 Rorug02G0480800
rosa_samantha	Rh2AG546700 Rh2BG560100 Rh2CG530100 Rh2DG568800
rosa_wichuraiana	Rw2G045210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	104
Acc16I	TGCGCA	1 cut(s)	571
AccBSI	CCGCTC	1 cut(s)	50
AccII	CGCG	1 cut(s)	38
AciI	CCGC	6 cut(s)	36, 38, 48, 62, 488, 575
AclWI	GGATC	2 cut(s)	295, 869
AcsI	RAATTY	1 cut(s)	172
AcuI	CTGAAG	3 cut(s)	65, 880, 962
AfaI	GTAC	5 cut(s)	389, 610, 731, 925, 1154
AfiI	CCNNNNNNNGG	4 cut(s)	82, 726, 1036, 1174
AflIII	ACRYGT	1 cut(s)	751
AgsI	TTSAA	7 cut(s)	94, 131, 205, 325, 426, 1237, 1403
AhlI	ACTAGT	1 cut(s)	107
AjnI	CCWGG	2 cut(s)	529, 693
AluBI	AGCT	6 cut(s)	100, 937, 1021, 1197, 1333, 1380
AluI	AGCT	6 cut(s)	100, 937, 1021, 1197, 1333, 1380
Alw21I	GWGCWC	2 cut(s)	939, 1391
Alw26I	GTCTC	3 cut(s)	343, 1248, 1342
AlwI	GGATC	2 cut(s)	295, 869
AoxI	GGCC	1 cut(s)	1176
ApeKI	GCWGC	3 cut(s)	572, 698, 1380
ApoI	RAATTY	1 cut(s)	172
ArsI	GACNNNNNNTTYG	2 cut(s)	14, 46
Asp700I	GAANNNNTTC	1 cut(s)	421
AspLEI	GCGC	2 cut(s)	572, 646
AsuHPI	GGTGA	5 cut(s)	485, 626, 1041, 1157, 1318
BanII	GRGCYC	1 cut(s)	939
Bbv12I	GWGCWC	2 cut(s)	939, 1391
BbvI	GCAGC	3 cut(s)	584, 685, 1367
BceAI	ACGGC	2 cut(s)	496, 1191
BciT130I	CCWGG	2 cut(s)	531, 695
BciVI	GTATCC	2 cut(s)	236, 821
BcoDI	GTCTC	3 cut(s)	343, 1248, 1342
BcuI	ACTAGT	1 cut(s)	107
BfaI	CTAG	4 cut(s)	108, 636, 1031, 1133
BfmI	CTRYAG	1 cut(s)	556
BfoI	RGCGCY	1 cut(s)	647
BfuI	GTATCC	2 cut(s)	236, 821
BisI	GCNGC	7 cut(s)	36, 48, 488, 573, 576, 699, 1381
BlsI	GCNGC	7 cut(s)	37, 49, 489, 574, 577, 700, 1382
BmcAI	AGTACT	1 cut(s)	1154
Bme1390I	CCNGG	2 cut(s)	531, 695
BmiI	GGNNCC	2 cut(s)	148, 892
BmrFI	CCNGG	2 cut(s)	531, 695
BmsI	GCATC	6 cut(s)	107, 891, 1055, 1081, 1126, 1296
BpmI	CTGGAG	1 cut(s)	552
Bsa29I	ATCGAT	1 cut(s)	821
BsaBI	GATNNNNATC	1 cut(s)	873
BsaJI	CCNNGG	3 cut(s)	36, 1110, 1168
BsaWI	WCCGGW	1 cut(s)	276
Bsc4I	CCNNNNNNNGG	4 cut(s)	82, 726, 1036, 1174
Bse1I	ACTGG	3 cut(s)	616, 815, 1052
Bse3DI	GCAATG	4 cut(s)	127, 482, 852, 857
Bse8I	GATNNNNATC	1 cut(s)	873
BseBI	CCWGG	2 cut(s)	531, 695
BseCI	ATCGAT	1 cut(s)	821
BseDI	CCNNGG	3 cut(s)	36, 1110, 1168
BseGI	GGATG	4 cut(s)	46, 362, 542, 906
BseJI	GATNNNNATC	1 cut(s)	873
BseLI	CCNNNNNNNGG	4 cut(s)	82, 726, 1036, 1174
BseMI	GCAATG	4 cut(s)	127, 482, 852, 857
BseNI	ACTGG	3 cut(s)	616, 815, 1052
BseRI	GAGGAG	1 cut(s)	1343
BseXI	GCAGC	3 cut(s)	584, 685, 1367
Bsh1236I	CGCG	1 cut(s)	38
BshFI	GGCC	1 cut(s)	1178
BshVI	ATCGAT	1 cut(s)	821
BsiHKAI	GWGCWC	2 cut(s)	939, 1391
BsiSI	CCGG	1 cut(s)	277
BslFI	GGGAC	1 cut(s)	860
BslI	CCNNNNNNNGG	4 cut(s)	82, 726, 1036, 1174
BsmAI	GTCTC	3 cut(s)	343, 1248, 1342
BsmBI	CGTCTC	1 cut(s)	1248
BsmFI	GGGAC	1 cut(s)	860
BsnI	GGCC	1 cut(s)	1178
Bsp1286I	GDGCHC	2 cut(s)	939, 1391
Bsp143I	GATC	3 cut(s)	287, 874, 1081
BspACI	CCGC	6 cut(s)	36, 38, 48, 62, 488, 575
BspANI	GGCC	1 cut(s)	1178
BspDI	ATCGAT	1 cut(s)	821
BspFNI	CGCG	1 cut(s)	38
BspLI	GGNNCC	2 cut(s)	148, 892
BspMAI	CTGCAG	1 cut(s)	560
BspPI	GGATC	2 cut(s)	295, 869
BspQI	GCTCTTC	1 cut(s)	57
BsrBI	CCGCTC	1 cut(s)	50
BsrDI	GCAATG	4 cut(s)	127, 482, 852, 857
BsrI	ACTGG	3 cut(s)	616, 815, 1052
BssECI	CCNNGG	3 cut(s)	36, 1110, 1168
BssMI	GATC	3 cut(s)	287, 874, 1081
BssT1I	CCWWGG	1 cut(s)	1168
Bst2UI	CCWGG	2 cut(s)	531, 695
Bst4CI	ACNGT	2 cut(s)	1128, 1163
Bst6I	CTCTTC	4 cut(s)	57, 444, 1239, 1296
BstAPI	GCANNNNNTGC	1 cut(s)	1361
BstDEI	CTNAG	2 cut(s)	725, 1392
BstDSI	CCRYGG	1 cut(s)	36
BstF5I	GGATG	4 cut(s)	46, 362, 542, 906
BstFNI	CGCG	1 cut(s)	38
BstH2I	RGCGCY	1 cut(s)	647
BstHHI	GCGC	2 cut(s)	572, 646
BstKTI	GATC	3 cut(s)	290, 877, 1084
BstMAI	GTCTC	3 cut(s)	343, 1248, 1342
BstMBI	GATC	3 cut(s)	287, 874, 1081
BstMWI	GCNNNNNNNGC	6 cut(s)	44, 56, 426, 704, 1361, 1386
BstNI	CCWGG	2 cut(s)	531, 695
BstNSI	RCATGY	3 cut(s)	668, 755, 1015
BstSCI	CCNGG	2 cut(s)	529, 693
BstSFI	CTRYAG	1 cut(s)	556
BstUI	CGCG	1 cut(s)	38
BstV1I	GCAGC	3 cut(s)	584, 685, 1367
BstXI	CCANNNNNNTGG	1 cut(s)	247
Bsu15I	ATCGAT	1 cut(s)	821
BsuI	GTATCC	2 cut(s)	236, 821
BsuRI	GGCC	1 cut(s)	1178
BsuTUI	ATCGAT	1 cut(s)	821
BtgI	CCRYGG	1 cut(s)	36
BtsCI	GGATG	4 cut(s)	46, 362, 542, 906
BtsI	GCAGTG	2 cut(s)	565, 1272
BtsIMutI	CAGTG	2 cut(s)	565, 1272
CfoI	GCGC	2 cut(s)	572, 646
Cfr42I	CCGCGG	1 cut(s)	39
ClaI	ATCGAT	1 cut(s)	821
CseI	GACGC	1 cut(s)	1293
Csp6I	GTAC	5 cut(s)	388, 609, 730, 924, 1153
CviAII	CATG	5 cut(s)	567, 665, 752, 807, 1012
CviQI	GTAC	5 cut(s)	388, 609, 730, 924, 1153
DdeI	CTNAG	2 cut(s)	725, 1392
DpnI	GATC	3 cut(s)	289, 876, 1083
DpnII	GATC	3 cut(s)	287, 874, 1081
Eam1104I	CTCTTC	4 cut(s)	57, 444, 1239, 1296
EarI	CTCTTC	4 cut(s)	57, 444, 1239, 1296
Ecl136II	GAGCTC	1 cut(s)	937
Eco130I	CCWWGG	1 cut(s)	1168
Eco24I	GRGCYC	1 cut(s)	939
Eco53kI	GAGCTC	1 cut(s)	937
Eco57I	CTGAAG	3 cut(s)	65, 880, 962
EcoICRI	GAGCTC	1 cut(s)	937
EcoRII	CCWGG	2 cut(s)	529, 693
EcoT14I	CCWWGG	1 cut(s)	1168
EcoT38I	GRGCYC	1 cut(s)	939
ErhI	CCWWGG	1 cut(s)	1168
Esp3I	CGTCTC	1 cut(s)	1248
FaeI	CATG	5 cut(s)	570, 668, 755, 810, 1015
FalI	AAGNNNNNCTT	2 cut(s)	1344, 1376
FaqI	GGGAC	1 cut(s)	860
FatI	CATG	5 cut(s)	566, 664, 751, 806, 1011
Fnu4HI	GCNGC	7 cut(s)	36, 48, 488, 573, 576, 699, 1381
FokI	GGATG	4 cut(s)	53, 349, 549, 913
FriOI	GRGCYC	1 cut(s)	939
Fsp4HI	GCNGC	7 cut(s)	36, 48, 488, 573, 576, 699, 1381
FspBI	CTAG	4 cut(s)	108, 636, 1031, 1133
FspI	TGCGCA	1 cut(s)	571
GlaI	GCGC	2 cut(s)	571, 645
GluI	GCNGC	7 cut(s)	36, 48, 488, 573, 576, 699, 1381
GsuI	CTGGAG	1 cut(s)	552
HaeII	RGCGCY	1 cut(s)	647
HaeIII	GGCC	1 cut(s)	1178
HapII	CCGG	1 cut(s)	277
HgaI	GACGC	1 cut(s)	1293
HhaI	GCGC	2 cut(s)	572, 646
Hin1II	CATG	5 cut(s)	570, 668, 755, 810, 1015
Hin6I	GCGC	2 cut(s)	570, 644
HinP1I	GCGC	2 cut(s)	570, 644
HindIII	AAGCTT	1 cut(s)	98
HinfI	GANTC	7 cut(s)	5, 214, 328, 359, 563, 626, 1406
HpaII	CCGG	1 cut(s)	277
HphI	GGTGA	5 cut(s)	485, 626, 1041, 1157, 1318
Hpy166II	GTNNAC	3 cut(s)	13, 757, 924
Hpy188I	TCNGA	4 cut(s)	178, 367, 625, 1159
Hpy8I	GTNNAC	3 cut(s)	13, 757, 924
Hpy99I	CGWCG	4 cut(s)	26, 359, 517, 1328
HpyAV	CCTTC	7 cut(s)	440, 697, 831, 881, 904, 1189, 1243
HpyCH4III	ACNGT	2 cut(s)	1128, 1163
HpyCH4IV	ACGT	1 cut(s)	926
HpyF10VI	GCNNNNNNNGC	6 cut(s)	44, 56, 426, 704, 1361, 1386
HpyF3I	CTNAG	2 cut(s)	725, 1392
HpySE526I	ACGT	1 cut(s)	926
Hsp92II	CATG	5 cut(s)	570, 668, 755, 810, 1015
HspAI	GCGC	2 cut(s)	570, 644
KspI	CCGCGG	1 cut(s)	39
Kzo9I	GATC	3 cut(s)	287, 874, 1081
LguI	GCTCTTC	1 cut(s)	57
LmnI	GCTCC	5 cut(s)	64, 890, 934, 942, 1330
Lsp1109I	GCAGC	3 cut(s)	584, 685, 1367
LweI	GCATC	6 cut(s)	107, 891, 1055, 1081, 1126, 1296
MaeI	CTAG	4 cut(s)	108, 636, 1031, 1133
MaeII	ACGT	1 cut(s)	926
MaeIII	GTNAC	2 cut(s)	350, 1306
MalI	GATC	3 cut(s)	289, 876, 1083
MbiI	CCGCTC	1 cut(s)	50
MboI	GATC	3 cut(s)	287, 874, 1081
MhlI	GDGCHC	2 cut(s)	939, 1391
MluCI	AATT	4 cut(s)	126, 172, 1272, 1416
MmeI	TCCRAC	3 cut(s)	92, 253, 264
MroXI	GAANNNNTTC	1 cut(s)	421
MseI	TTAA	2 cut(s)	660, 1280
MslI	CAYNNNNRTG	2 cut(s)	669, 1010
MspA1I	CMGCKG	3 cut(s)	38, 575, 1380
MspI	CCGG	1 cut(s)	277
MspR9I	CCNGG	2 cut(s)	531, 695
MvaI	CCWGG	2 cut(s)	531, 695
MvnI	CGCG	1 cut(s)	38
MwoI	GCNNNNNNNGC	6 cut(s)	44, 56, 426, 704, 1361, 1386
NdeII	GATC	3 cut(s)	287, 874, 1081
NlaIII	CATG	5 cut(s)	570, 668, 755, 810, 1015
NlaIV	GGNNCC	2 cut(s)	148, 892
NmuCI	GTSAC	2 cut(s)	350, 1306
NsbI	TGCGCA	1 cut(s)	571
NspI	RCATGY	3 cut(s)	668, 755, 1015
PciI	ACATGT	1 cut(s)	751
PciSI	GCTCTTC	1 cut(s)	57
PcsI	WCGNNNNNNNCGW	2 cut(s)	363, 521
PdmI	GAANNNNTTC	1 cut(s)	421
PfeI	GAWTC	7 cut(s)	5, 214, 328, 359, 563, 626, 1406
PfoI	TCCNGGA	1 cut(s)	529
PkrI	GCNGC	7 cut(s)	37, 49, 489, 574, 577, 700, 1382
PscI	ACATGT	1 cut(s)	751
PsiI	TTATAA	1 cut(s)	104
Psp124BI	GAGCTC	1 cut(s)	939
Psp6I	CCWGG	2 cut(s)	529, 693
PspGI	CCWGG	2 cut(s)	529, 693
PspN4I	GGNNCC	2 cut(s)	148, 892
PstI	CTGCAG	1 cut(s)	560
PvuII	CAGCTG	1 cut(s)	1380
RsaI	GTAC	5 cut(s)	389, 610, 731, 925, 1154
RsaNI	GTAC	5 cut(s)	388, 609, 730, 924, 1153
RseI	CAYNNNNRTG	2 cut(s)	669, 1010
SacI	GAGCTC	1 cut(s)	939
SacII	CCGCGG	1 cut(s)	39
SapI	GCTCTTC	1 cut(s)	57
SaqAI	TTAA	2 cut(s)	660, 1280
SatI	GCNGC	7 cut(s)	36, 48, 488, 573, 576, 699, 1381
Sau3AI	GATC	3 cut(s)	287, 874, 1081
ScaI	AGTACT	1 cut(s)	1154
ScrFI	CCNGG	2 cut(s)	531, 695
SduI	GDGCHC	2 cut(s)	939, 1391
SfaNI	GCATC	6 cut(s)	107, 891, 1055, 1081, 1126, 1296
SfcI	CTRYAG	1 cut(s)	556
Sfr303I	CCGCGG	1 cut(s)	39
SgrBI	CCGCGG	1 cut(s)	39
SmiMI	CAYNNNNRTG	2 cut(s)	669, 1010
SpeI	ACTAGT	1 cut(s)	107
Sse9I	AATT	4 cut(s)	126, 172, 1272, 1416
SsiI	CCGC	6 cut(s)	36, 38, 48, 62, 488, 575
SspMI	CTAG	4 cut(s)	108, 636, 1031, 1133
SstI	GAGCTC	1 cut(s)	939
StyD4I	CCNGG	2 cut(s)	529, 693
StyI	CCWWGG	1 cut(s)	1168
TaaI	ACNGT	2 cut(s)	1128, 1163
TaiI	ACGT	1 cut(s)	929
TaqI	TCGA	4 cut(s)	294, 821, 987, 1323
TasI	AATT	4 cut(s)	126, 172, 1272, 1416
TatI	WGTACW	3 cut(s)	387, 608, 1152
TauI	GCSGC	4 cut(s)	38, 50, 490, 578
TfiI	GAWTC	7 cut(s)	5, 214, 328, 359, 563, 626, 1406
Tru1I	TTAA	2 cut(s)	660, 1280
Tru9I	TTAA	2 cut(s)	660, 1280
TscAI	CASTG	2 cut(s)	565, 1272
TseFI	GTSAC	2 cut(s)	350, 1306
TseI	GCWGC	3 cut(s)	572, 698, 1380
Tsp45I	GTSAC	2 cut(s)	350, 1306
TspDTI	ATGAA	9 cut(s)	207, 271, 351, 390, 482, 900, 1217, 1305, 1401
TspGWI	ACGGA	1 cut(s)	1272
TspRI	CASTG	2 cut(s)	565, 1272
XapI	RAATTY	1 cut(s)	172
XbaI	TCTAGA	2 cut(s)	635, 1132
XceI	RCATGY	3 cut(s)	668, 755, 1015
XmnI	GAANNNNTTC	1 cut(s)	421
XspI	CTAG	4 cut(s)	108, 636, 1031, 1133
ZrmI	AGTACT	1 cut(s)	1154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.