Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005855

Physical Location & Seq

Genomic Coordinates Reverse (-)

61101036 .. 61101500

Gene Structure 465 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0480300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGCTCAGCAGCAGAGTAAGACCCGACATCGTCCTGAATATGAGGTCGATGATGTAGTTGTTGAGATACTGTCGAGGCTACCGGTTAAATCTTTGAAGCGATTCCGGTGCGTATGCAAGTCGTGGTGTGATTTAATCTCCGATTCTTTTTTTGTTATGAAGCATGCCAATCACGCAAAGAAAGACACCAGAAGCTTGAAGGTTCTTGTTTCAATCGAGCCTCCCCAATCCGTAGACTACGAAGCTCTACTGAAGCATGAAGATGATGGACATGTTGCAAGCAGGCAACTTAAGCTTGATTTATCAAAGTGTTGCCCAGCCATGTTGAGGTCTTGTCATCTGTACGTTGTGGGATCTTGTAATGGGTTGATATGTCTACATGGAGTCGACATGAATCGAGACTACAGTGACATTCTTTTATGGAATCCTTGTACTGGAGATACCTGTGTTACCGGAACATACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SET zf-MYND

Protein Analysis

154

Amino Acids

17.5

Weight (kDa)

7.56

Isoelectric Point (pI)

51.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	17 - 49	4.3e-09	F-box domain
F-box-like	PF12937	17 - 49	5.6e-08	F-box-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005855)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21820
fragaria_vesca	FvH4_6g43540 FvH4_6g43540 FvH4_6g43540 FvH4_6g43540 FvH4_6g43540 FvH4_6g43540 FvH4_6g43540 FvH4_6g43540
malus_domestica	MD09G1105100.v1.1
prunus_persica	Prupe.3G220400_v2.0.a1
pyrus_communis	pycom09g02820
rosa_chinensis	RchiOBHm_Chr2g0160071
rosa_laevigata	RLG00000021195
rosa_multiflora	Rmu_sc0002023.1_g000014
rosa_roxburghii	Rroxscaffold_2G00090050
rosa_rugosa	Rorug02G0480300 Rorug02G0480400 Rorug02G0480400 Rorug02G0480500 Rorug02G0480600 Rorug02G0480700 Rorug02G0480800
rosa_samantha	Rh2AG546700 Rh2BG560100 Rh2CG530100 Rh2DG568800
rosa_wichuraiana	Rw2G045210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	234, 376, 387
AclWI	GGATC	1 cut(s)	361
AcuI	CTGAAG	1 cut(s)	272
AfaI	GTAC	2 cut(s)	344, 433
AfiI	CCNNNNNNNGG	2 cut(s)	327, 434
AflII	CTTAAG	1 cut(s)	290
AflIII	ACRYGT	1 cut(s)	271
AgeI	ACCGGT	1 cut(s)	82
AgsI	TTSAA	3 cut(s)	97, 199, 213
AluBI	AGCT	3 cut(s)	195, 245, 295
AluI	AGCT	3 cut(s)	195, 245, 295
Alw26I	GTCTC	1 cut(s)	393
AlwI	GGATC	1 cut(s)	361
ApeKI	GCWGC	1 cut(s)	10
AsiGI	ACCGGT	1 cut(s)	82
Asp700I	GAANNNNTTC	1 cut(s)	101
BaeI	ACNNNNGTAYC	2 cut(s)	432, 465
BbvI	GCAGC	1 cut(s)	22
BccI	CCATC	1 cut(s)	260
BcgI	CGANNNNNNTGC	2 cut(s)	90, 124
BcoDI	GTCTC	1 cut(s)	393
BfmI	CTRYAG	1 cut(s)	403
BfrI	CTTAAG	1 cut(s)	290
BisI	GCNGC	1 cut(s)	11
BlpI	GCTNAGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	12
BpmI	CTGGAG	1 cut(s)	456
Bpu1102I	GCTNAGC	1 cut(s)	6
BsaWI	WCCGGW	3 cut(s)	82, 105, 452
Bsc4I	CCNNNNNNNGG	2 cut(s)	327, 434
Bse118I	RCCGGY	1 cut(s)	82
Bse1I	ACTGG	1 cut(s)	439
BseLI	CCNNNNNNNGG	2 cut(s)	327, 434
BseMII	CTCAG	1 cut(s)	20
BseNI	ACTGG	1 cut(s)	439
BseXI	GCAGC	1 cut(s)	22
BseYI	CCCAGC	1 cut(s)	316
BshTI	ACCGGT	1 cut(s)	82
BsiSI	CCGG	3 cut(s)	83, 106, 453
BslI	CCNNNNNNNGG	2 cut(s)	327, 434
BsmAI	GTCTC	1 cut(s)	393
Bsp143I	GATC	1 cut(s)	353
Bsp1720I	GCTNAGC	1 cut(s)	6
BspCNI	CTCAG	1 cut(s)	19
BspPI	GGATC	1 cut(s)	361
BspTI	CTTAAG	1 cut(s)	290
BsrFI	RCCGGY	1 cut(s)	82
BsrI	ACTGG	1 cut(s)	439
BssAI	RCCGGY	1 cut(s)	82
BssMI	GATC	1 cut(s)	353
Bst4CI	ACNGT	2 cut(s)	72, 407
BstAFI	CTTAAG	1 cut(s)	290
BstC8I	GCNNGC	3 cut(s)	165, 280, 284
BstDEI	CTNAG	1 cut(s)	6
BstKTI	GATC	1 cut(s)	356
BstMAI	GTCTC	1 cut(s)	393
BstMBI	GATC	1 cut(s)	353
BstMWI	GCNNNNNNNGC	2 cut(s)	173, 292
BstNSI	RCATGY	2 cut(s)	167, 275
BstSFI	CTRYAG	1 cut(s)	403
BstV1I	GCAGC	1 cut(s)	22
BstX2I	RGATCY	1 cut(s)	353
BstYI	RGATCY	1 cut(s)	353
BtsIMutI	CAGTG	1 cut(s)	412
Cac8I	GCNNGC	3 cut(s)	165, 280, 284
Cfr10I	RCCGGY	1 cut(s)	82
Csp6I	GTAC	2 cut(s)	343, 432
CspAI	ACCGGT	1 cut(s)	82
CviAII	CATG	6 cut(s)	164, 257, 272, 322, 380, 391
CviJI	RGCY	7 cut(s)	5, 79, 195, 220, 245, 295, 320
CviKI_1	RGCY	7 cut(s)	5, 79, 195, 220, 245, 295, 320
CviQI	GTAC	2 cut(s)	343, 432
DdeI	CTNAG	1 cut(s)	6
DpnI	GATC	1 cut(s)	355
DpnII	GATC	1 cut(s)	353
Eco57I	CTGAAG	1 cut(s)	272
FaeI	CATG	6 cut(s)	167, 260, 275, 325, 383, 394
FatI	CATG	6 cut(s)	163, 256, 271, 321, 379, 390
FblI	GTMKAC	3 cut(s)	234, 376, 387
Fnu4HI	GCNGC	1 cut(s)	11
Fsp4HI	GCNGC	1 cut(s)	11
GluI	GCNGC	1 cut(s)	11
GsaI	CCCAGC	1 cut(s)	320
GsuI	CTGGAG	1 cut(s)	456
HapII	CCGG	3 cut(s)	83, 106, 453
Hin1II	CATG	6 cut(s)	167, 260, 275, 325, 383, 394
HincII	GTYRAC	1 cut(s)	388
HindII	GTYRAC	1 cut(s)	388
HindIII	AAGCTT	2 cut(s)	193, 293
HinfI	GANTC	5 cut(s)	102, 143, 384, 394, 424
HpaII	CCGG	3 cut(s)	83, 106, 453
Hpy166II	GTNNAC	3 cut(s)	235, 377, 388
Hpy188I	TCNGA	1 cut(s)	142
Hpy188III	TCNNGA	2 cut(s)	35, 398
Hpy8I	GTNNAC	3 cut(s)	235, 377, 388
HpyAV	CCTTC	1 cut(s)	193
HpyCH4III	ACNGT	2 cut(s)	72, 407
HpyCH4IV	ACGT	1 cut(s)	345
HpyCH4V	TGCA	2 cut(s)	117, 278
HpyF10VI	GCNNNNNNNGC	2 cut(s)	173, 292
HpyF3I	CTNAG	1 cut(s)	6
HpySE526I	ACGT	1 cut(s)	345
Hsp92II	CATG	6 cut(s)	167, 260, 275, 325, 383, 394
Kzo9I	GATC	1 cut(s)	353
LpnPI	CCDG	8 cut(s)	48, 96, 119, 202, 268, 330, 420, 457
Lsp1109I	GCAGC	1 cut(s)	22
MaeII	ACGT	1 cut(s)	345
MaeIII	GTNAC	2 cut(s)	407, 448
MalI	GATC	1 cut(s)	355
MboI	GATC	1 cut(s)	353
MboII	GAAGA	1 cut(s)	272
MflI	RGATCY	1 cut(s)	353
MlyI	GAGTC	1 cut(s)	393
MnlI	CCTC	4 cut(s)	37, 69, 231, 321
MroXI	GAANNNNTTC	1 cut(s)	101
MseI	TTAA	3 cut(s)	87, 134, 291
MslI	CAYNNNNRTG	1 cut(s)	261
MspCI	CTTAAG	1 cut(s)	290
MspI	CCGG	3 cut(s)	83, 106, 453
MwoI	GCNNNNNNNGC	2 cut(s)	173, 292
NdeII	GATC	1 cut(s)	353
NlaIII	CATG	6 cut(s)	167, 260, 275, 325, 383, 394
NmuCI	GTSAC	1 cut(s)	407
NspI	RCATGY	2 cut(s)	167, 275
PaeI	GCATGC	1 cut(s)	167
PciI	ACATGT	1 cut(s)	271
PdmI	GAANNNNTTC	1 cut(s)	101
PfeI	GAWTC	4 cut(s)	102, 143, 394, 424
PflFI	GACNNNGTC	1 cut(s)	30
PinAI	ACCGGT	1 cut(s)	82
PkrI	GCNGC	1 cut(s)	12
PleI	GAGTC	1 cut(s)	392
PpsI	GAGTC	1 cut(s)	392
PscI	ACATGT	1 cut(s)	271
PspFI	CCCAGC	1 cut(s)	316
PsuI	RGATCY	1 cut(s)	353
PsyI	GACNNNGTC	1 cut(s)	30
RsaI	GTAC	2 cut(s)	344, 433
RsaNI	GTAC	2 cut(s)	343, 432
RseI	CAYNNNNRTG	1 cut(s)	261
SalI	GTCGAC	1 cut(s)	386
SaqAI	TTAA	3 cut(s)	87, 134, 291
SatI	GCNGC	1 cut(s)	11
Sau3AI	GATC	1 cut(s)	353
SchI	GAGTC	1 cut(s)	393
SetI	ASST	8 cut(s)	48, 197, 204, 247, 297, 332, 348, 446
SfcI	CTRYAG	1 cut(s)	403
SmiMI	CAYNNNNRTG	1 cut(s)	261
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
SphI	GCATGC	1 cut(s)	167
TaaI	ACNGT	2 cut(s)	72, 407
TaiI	ACGT	1 cut(s)	348
TaqI	TCGA	5 cut(s)	48, 74, 216, 387, 397
TatI	WGTACW	1 cut(s)	431
TfiI	GAWTC	4 cut(s)	102, 143, 394, 424
Tru1I	TTAA	3 cut(s)	87, 134, 291
Tru9I	TTAA	3 cut(s)	87, 134, 291
TscAI	CASTG	1 cut(s)	412
TseFI	GTSAC	1 cut(s)	407
TseI	GCWGC	1 cut(s)	10
Tsp45I	GTSAC	1 cut(s)	407
TspDTI	ATGAA	3 cut(s)	173, 273, 407
TspGWI	ACGGA	1 cut(s)	220
TspRI	CASTG	1 cut(s)	412
Tth111I	GACNNNGTC	1 cut(s)	30
Vha464I	CTTAAG	1 cut(s)	290
XceI	RCATGY	2 cut(s)	167, 275
XmiI	GTMKAC	3 cut(s)	234, 376, 387
XmnI	GAANNNNTTC	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.