Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0005855

Physical Location & Seq

Genomic Coordinates Reverse (-)

77039464 .. 77042699

Gene Structure 3236 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG560100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1440 bp

ATGGAGAGCGAGTGCCCAATCGATGCAGAGCTGGGCAATGAAATCTCTGAGCTTCTTAAACCTCCATCCCCTGCAAAAGTAGAGGAGTACTTGAACCGGCTCATTAAAACCAGCACCAGACAATGTCATGGCATCACAGTCAAACACAACGGAGACCTTGGCAAAGGTGTTTACGCTGACTCGGACTTGGAAGGAGATGAGCTTCTCCTCAAGGACCAAATGCTTGTGGGTCTTCAGCATTCTTCTAACAAGATTGAGTGTTTAGTGTGTAGCTTCTGTTTCTGTTTTGTTGGCTCTGTTGAGCTTCAAATAGGGAGGAGGCTTTATCTTCAAGAAATGGGAGTTTCTGCCAATTGTTGTCAGACTGATTACTCTTCTGATGATGAAGAAGAAGAAGACGAGGAGATGGGGCAACGTGGTTCCAGCAGTTCCGGGTACAAAGGGAAGGTTCCTCTTCCTAAAGGGATTGCACACTCTTTGATGAATGGTGAACTCAAATTGCCCTACTCGGATAAGTTTTCGATGCCTCCTGCTGTTCCATGTCCTGGTGGCTGTGGAGAAGCTTATTACTGCAGCAAACTATGTGCAGAGTCTGATTGGAATTCATCCCATTCCTTACTTTGCACGGGGGAGAAGTCAGAATCAGTCTCTAGGGAGGCCCTTGTGAAGTTTATACAGCATGCCAATGAAACCAATGATATATTCCTCCTTGCTGCAAAGGTAGTGGCTTCCACCATTTTAAATTATAGGAAGTTGAAAGTAACTCAGTCTGAAGGAGACAATAAGCCTAGCGTTTCAGGGAGTCCATATCTATCCTTACTCTTAGAAGCATGGAAGCCAATATCAGTGGGACACAAGAGAAGGTGGTGGGACTGCGTTGCGTTGCCAATTGATGTTGAATCTTCTGATGAAGCTGCATTTAGGATGCAAATAAGAGAGCTGGCATTCACGTCACTTCAGCTCCTAAAAGCAGCCATCTTTGATGAGGAATGTAAACCAATATTCTCCCTTGAAATTTATGGACATATAATTGGCATGTTCGAGTTGAATAATCTAGATTTGGTTGTAGCATCTCCTGTGGAAGATTATTTTTTATTCATCGATGATCTTCCAGATCCTATAAAGAAAGAAGTTGAGGAGATTACACGACCATTTTTGGATGCTCTTGGTGATGACTATTCAGTTTGTTGCCAAGGCACTGCATTTTATCCTCTTCAGAGTTGTATGAATCATTCTTGTAGTCCCAATGCCAAAGCATTCAAAAGAGAGGAGGACAGAGATGGTCAAGCAACAATAATTGCACTAAAACCAATTTTCAAGGGAGAGGAGGTTACTATTTCTTATGTGGATGAGGACATTCCTTTCGAGGAGAGACAAGCATTACTTGCAGATTATGGTTTTAGATGCAGGTGTCCAAGATGCTTAGAAGAAGAACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SET zf-MYND

Protein Analysis

479

Amino Acids

53.4

Weight (kDa)

4.69

Isoelectric Point (pI)

52.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-MYND	PF01753	180 - 208	8.5e-06	MYND finger
SET	PF00856	378 - 448	5.1e-11	SET domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005855)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21820
fragaria_vesca	FvH4_6g43540 FvH4_6g43540 FvH4_6g43540 FvH4_6g43540 FvH4_6g43540 FvH4_6g43540 FvH4_6g43540 FvH4_6g43540
malus_domestica	MD09G1105100.v1.1
prunus_persica	Prupe.3G220400_v2.0.a1
pyrus_communis	pycom09g02820
rosa_chinensis	RchiOBHm_Chr2g0160071
rosa_laevigata	RLG00000021195
rosa_multiflora	Rmu_sc0002023.1_g000014
rosa_roxburghii	Rroxscaffold_2G00090050
rosa_rugosa	Rorug02G0480300 Rorug02G0480400 Rorug02G0480400 Rorug02G0480500 Rorug02G0480600 Rorug02G0480700 Rorug02G0480800
rosa_samantha	Rh2AG546700 Rh2BG560100 Rh2CG530100 Rh2DG568800
rosa_wichuraiana	Rw2G045210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1398
Acc36I	ACCTGC	1 cut(s)	1398
AccB7I	CCANNNNNTGG	1 cut(s)	545
AclWI	GGATC	1 cut(s)	1109
AcsI	RAATTY	2 cut(s)	601, 1014
AcuI	CTGAAG	4 cut(s)	218, 792, 941, 1199
AfaI	GTAC	2 cut(s)	89, 437
AfiI	CCNNNNNNNGG	1 cut(s)	545
AgsI	TTSAA	9 cut(s)	94, 308, 332, 757, 899, 1013, 1048, 1261, 1318
AjiI	CACGTC	1 cut(s)	951
AjnI	CCWGG	1 cut(s)	544
AjuI	GAANNNNNNNTTGG	2 cut(s)	686, 718
AluBI	AGCT	9 cut(s)	31, 52, 202, 273, 304, 563, 914, 940, 961
AluI	AGCT	9 cut(s)	31, 52, 202, 273, 304, 563, 914, 940, 961
Alw26I	GTCTC	4 cut(s)	147, 652, 771, 1366
AlwI	GGATC	1 cut(s)	1109
AlwNI	CAGNNNCTG	1 cut(s)	593
AoxI	GGCC	1 cut(s)	657
ApeKI	GCWGC	4 cut(s)	573, 713, 914, 971
ApoI	RAATTY	2 cut(s)	601, 1014
ArsI	GACNNNNNNTTYG	2 cut(s)	1346, 1378
AspS9I	GGNCC	2 cut(s)	214, 658
AsuC2I	CCSGG	1 cut(s)	433
AsuHPI	GGTGA	2 cut(s)	500, 1181
AvaII	GGWCC	1 cut(s)	214
BaeGI	GKGCMC	1 cut(s)	17
BbsI	GAAGAC	2 cut(s)	224, 402
BbvI	GCAGC	4 cut(s)	585, 700, 901, 983
BccI	CCATC	4 cut(s)	73, 400, 983, 1274
BciT130I	CCWGG	1 cut(s)	546
BcnI	CCSGG	1 cut(s)	433
BcoDI	GTCTC	4 cut(s)	147, 652, 771, 1366
BfaI	CTAG	3 cut(s)	651, 789, 1055
BfmI	CTRYAG	1 cut(s)	571
BfuAI	ACCTGC	1 cut(s)	1398
BisI	GCNGC	4 cut(s)	574, 714, 915, 972
BlsI	GCNGC	4 cut(s)	575, 715, 916, 973
BmcAI	AGTACT	1 cut(s)	89
Bme1390I	CCNGG	2 cut(s)	433, 546
Bme18I	GGWCC	1 cut(s)	214
BmgBI	CACGTC	1 cut(s)	951
BmgT120I	GGNCC	2 cut(s)	214, 658
BmiI	GGNNCC	2 cut(s)	421, 450
BmrFI	CCNGG	2 cut(s)	433, 546
BmsI	GCATC	8 cut(s)	13, 141, 513, 915, 1079, 1150, 1394, 1409
BpiI	GAAGAC	2 cut(s)	224, 402
BpuEI	CTTGAG	1 cut(s)	194
BpuMI	CCSGG	1 cut(s)	433
Bsa29I	ATCGAT	2 cut(s)	21, 1101
BsaI	GGTCTC	1 cut(s)	147
BsaJI	CCNNGG	2 cut(s)	157, 1192
BsaXI	ACNNNNNCTCC	5 cut(s)	26, 945, 975, 1314, 1344
Bsc4I	CCNNNNNNNGG	1 cut(s)	545
Bse118I	RCCGGY	1 cut(s)	96
Bse3DI	GCAATG	1 cut(s)	43
BseBI	CCWGG	1 cut(s)	546
BseCI	ATCGAT	2 cut(s)	21, 1101
BseDI	CCNNGG	2 cut(s)	157, 1192
BseGI	GGATG	5 cut(s)	65, 605, 930, 1165, 1354
BseLI	CCNNNNNNNGG	1 cut(s)	545
BseMI	GCAATG	1 cut(s)	43
BseMII	CTCAG	2 cut(s)	39, 779
BseRI	GAGGAG	8 cut(s)	98, 197, 331, 416, 1151, 1283, 1340, 1382
BseSI	GKGCMC	1 cut(s)	17
BseXI	GCAGC	4 cut(s)	585, 700, 901, 983
BseYI	CCCAGC	1 cut(s)	31
BsgI	GTGCAG	1 cut(s)	606
BshFI	GGCC	1 cut(s)	659
BshVI	ATCGAT	2 cut(s)	21, 1101
BsiSI	CCGG	2 cut(s)	97, 432
BslFI	GGGAC	3 cut(s)	864, 884, 1227
BslI	CCNNNNNNNGG	1 cut(s)	545
BsmAI	GTCTC	4 cut(s)	147, 652, 771, 1366
BsmFI	GGGAC	3 cut(s)	864, 884, 1227
BsmI	GAATGC	3 cut(s)	238, 944, 1256
BsnI	GGCC	1 cut(s)	659
Bso31I	GGTCTC	1 cut(s)	147
Bsp1286I	GDGCHC	1 cut(s)	17
Bsp143I	GATC	2 cut(s)	1105, 1114
BspANI	GGCC	1 cut(s)	659
BspCNI	CTCAG	2 cut(s)	40, 778
BspDI	ATCGAT	2 cut(s)	21, 1101
BspLI	GGNNCC	2 cut(s)	421, 450
BspMAI	CTGCAG	1 cut(s)	575
BspMI	ACCTGC	1 cut(s)	1398
BspPI	GGATC	1 cut(s)	1109
BspTNI	GGTCTC	1 cut(s)	147
BsrDI	GCAATG	1 cut(s)	43
BsrFI	RCCGGY	1 cut(s)	96
BssAI	RCCGGY	1 cut(s)	96
BssECI	CCNNGG	2 cut(s)	157, 1192
BssMI	GATC	2 cut(s)	1105, 1114
BssT1I	CCWWGG	2 cut(s)	157, 1192
Bst2UI	CCWGG	1 cut(s)	546
Bst4CI	ACNGT	1 cut(s)	139
Bst6I	CTCTTC	3 cut(s)	379, 459, 1218
BstAPI	GCANNNNNTGC	1 cut(s)	1385
BstC8I	GCNNGC	2 cut(s)	681, 942
BstDEI	CTNAG	4 cut(s)	48, 765, 823, 1423
BstF5I	GGATG	5 cut(s)	65, 605, 930, 1165, 1354
BstKTI	GATC	2 cut(s)	1108, 1117
BstMAI	GTCTC	4 cut(s)	147, 652, 771, 1366
BstMBI	GATC	2 cut(s)	1105, 1114
BstMWI	GCNNNNNNNGC	1 cut(s)	1385
BstNI	CCWGG	1 cut(s)	546
BstNSI	RCATGY	2 cut(s)	683, 1039
BstSCI	CCNGG	2 cut(s)	431, 544
BstSFI	CTRYAG	1 cut(s)	571
BstSLI	GKGCMC	1 cut(s)	17
BstV1I	GCAGC	4 cut(s)	585, 700, 901, 983
BstV2I	GAAGAC	2 cut(s)	224, 402
BstX2I	RGATCY	1 cut(s)	1114
BstYI	RGATCY	1 cut(s)	1114
Bsu15I	ATCGAT	2 cut(s)	21, 1101
BsuRI	GGCC	1 cut(s)	659
BsuTUI	ATCGAT	2 cut(s)	21, 1101
BtrI	CACGTC	1 cut(s)	951
BtsCI	GGATG	5 cut(s)	65, 605, 930, 1165, 1354
BtsI	GCAGTG	1 cut(s)	1197
BtsIMutI	CAGTG	2 cut(s)	852, 1197
BveI	ACCTGC	1 cut(s)	1398
Cac8I	GCNNGC	2 cut(s)	681, 942
CaiI	CAGNNNCTG	1 cut(s)	593
Cfr10I	RCCGGY	1 cut(s)	96
Cfr13I	GGNCC	2 cut(s)	214, 658
ClaI	ATCGAT	2 cut(s)	21, 1101
Csp6I	GTAC	2 cut(s)	88, 436
CspCI	CAANNNNNGTGG	4 cut(s)	705, 740, 828, 863
CviAII	CATG	5 cut(s)	128, 540, 680, 831, 1036
CviQI	GTAC	2 cut(s)	88, 436
DdeI	CTNAG	4 cut(s)	48, 765, 823, 1423
DpnI	GATC	2 cut(s)	1107, 1116
DpnII	GATC	2 cut(s)	1105, 1114
DraI	TTTAAA	1 cut(s)	741
Eam1104I	CTCTTC	3 cut(s)	379, 459, 1218
EarI	CTCTTC	3 cut(s)	379, 459, 1218
Eco130I	CCWWGG	2 cut(s)	157, 1192
Eco31I	GGTCTC	1 cut(s)	147
Eco47I	GGWCC	1 cut(s)	214
Eco57I	CTGAAG	4 cut(s)	218, 792, 941, 1199
EcoO109I	RGGNCCY	1 cut(s)	658
EcoRI	GAATTC	1 cut(s)	601
EcoRII	CCWGG	1 cut(s)	544
EcoT14I	CCWWGG	2 cut(s)	157, 1192
ErhI	CCWWGG	2 cut(s)	157, 1192
FaeI	CATG	5 cut(s)	131, 543, 683, 834, 1039
FalI	AAGNNNNNCTT	2 cut(s)	1368, 1400
FaqI	GGGAC	3 cut(s)	864, 884, 1227
FatI	CATG	5 cut(s)	127, 539, 679, 830, 1035
Fnu4HI	GCNGC	4 cut(s)	574, 714, 915, 972
FokI	GGATG	5 cut(s)	52, 592, 937, 1172, 1361
Fsp4HI	GCNGC	4 cut(s)	574, 714, 915, 972
FspBI	CTAG	3 cut(s)	651, 789, 1055
GluI	GCNGC	4 cut(s)	574, 714, 915, 972
GsaI	CCCAGC	1 cut(s)	35
HaeIII	GGCC	1 cut(s)	659
HapII	CCGG	2 cut(s)	97, 432
Hin1II	CATG	5 cut(s)	131, 543, 683, 834, 1039
HindIII	AAGCTT	1 cut(s)	561
HinfI	GANTC	6 cut(s)	179, 590, 641, 802, 899, 1228
HpaII	CCGG	2 cut(s)	97, 432
HphI	GGTGA	2 cut(s)	500, 1181
Hpy166II	GTNNAC	3 cut(s)	172, 491, 995
Hpy188III	TCNNGA	3 cut(s)	332, 1055, 1112
Hpy8I	GTNNAC	3 cut(s)	172, 491, 995
HpyAV	CCTTC	4 cut(s)	185, 439, 767, 855
HpyCH4III	ACNGT	1 cut(s)	139
HpyCH4IV	ACGT	2 cut(s)	415, 950
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1385
HpyF3I	CTNAG	4 cut(s)	48, 765, 823, 1423
HpySE526I	ACGT	2 cut(s)	415, 950
Hsp92II	CATG	5 cut(s)	131, 543, 683, 834, 1039
Kzo9I	GATC	2 cut(s)	1105, 1114
LmnI	GCTCC	1 cut(s)	966
Lsp1109I	GCAGC	4 cut(s)	585, 700, 901, 983
LweI	GCATC	8 cut(s)	13, 141, 513, 915, 1079, 1150, 1394, 1409
MaeI	CTAG	3 cut(s)	651, 789, 1055
MaeII	ACGT	2 cut(s)	415, 950
MaeIII	GTNAC	3 cut(s)	760, 951, 1330
MalI	GATC	2 cut(s)	1107, 1116
MboI	GATC	2 cut(s)	1105, 1114
MfeI	CAATTG	2 cut(s)	352, 888
MflI	RGATCY	1 cut(s)	1114
MhlI	GDGCHC	1 cut(s)	17
MluCI	AATT	9 cut(s)	352, 497, 601, 742, 888, 1014, 1029, 1296, 1311
MlyI	GAGTC	3 cut(s)	173, 599, 811
MseI	TTAA	3 cut(s)	57, 105, 740
MslI	CAYNNNNRTG	1 cut(s)	684
MspI	CCGG	2 cut(s)	97, 432
MspR9I	CCNGG	2 cut(s)	433, 546
MunI	CAATTG	2 cut(s)	352, 888
Mva1269I	GAATGC	3 cut(s)	238, 944, 1256
MvaI	CCWGG	1 cut(s)	546
MwoI	GCNNNNNNNGC	1 cut(s)	1385
NciI	CCSGG	1 cut(s)	433
NdeII	GATC	2 cut(s)	1105, 1114
NlaIII	CATG	5 cut(s)	131, 543, 683, 834, 1039
NlaIV	GGNNCC	2 cut(s)	421, 450
NmuCI	GTSAC	1 cut(s)	951
NspI	RCATGY	2 cut(s)	683, 1039
PaeI	GCATGC	1 cut(s)	683
PaqCI	CACCTGC	1 cut(s)	1398
PctI	GAATGC	3 cut(s)	238, 944, 1256
PfeI	GAWTC	3 cut(s)	641, 899, 1228
PflFI	GACNNNGTC	1 cut(s)	123
PflMI	CCANNNNNTGG	1 cut(s)	545
PkrI	GCNGC	4 cut(s)	575, 715, 916, 973
PleI	GAGTC	3 cut(s)	173, 598, 810
PpsI	GAGTC	3 cut(s)	173, 598, 810
Psp6I	CCWGG	1 cut(s)	544
PspFI	CCCAGC	1 cut(s)	31
PspGI	CCWGG	1 cut(s)	544
PspN4I	GGNNCC	2 cut(s)	421, 450
PspPI	GGNCC	2 cut(s)	214, 658
PstI	CTGCAG	1 cut(s)	575
PstNI	CAGNNNCTG	1 cut(s)	593
PsuI	RGATCY	1 cut(s)	1114
PsyI	GACNNNGTC	1 cut(s)	123
RsaI	GTAC	2 cut(s)	89, 437
RsaNI	GTAC	2 cut(s)	88, 436
RseI	CAYNNNNRTG	1 cut(s)	684
SaqAI	TTAA	3 cut(s)	57, 105, 740
SatI	GCNGC	4 cut(s)	574, 714, 915, 972
Sau3AI	GATC	2 cut(s)	1105, 1114
Sau96I	GGNCC	2 cut(s)	214, 658
ScaI	AGTACT	1 cut(s)	89
SchI	GAGTC	3 cut(s)	173, 599, 811
ScrFI	CCNGG	2 cut(s)	433, 546
SduI	GDGCHC	1 cut(s)	17
SfaNI	GCATC	8 cut(s)	13, 141, 513, 915, 1079, 1150, 1394, 1409
SfcI	CTRYAG	1 cut(s)	571
SinI	GGWCC	1 cut(s)	214
SmiMI	CAYNNNNRTG	1 cut(s)	684
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
SphI	GCATGC	1 cut(s)	683
Sse9I	AATT	9 cut(s)	352, 497, 601, 742, 888, 1014, 1029, 1296, 1311
SspI	AATATT	1 cut(s)	1002
SspMI	CTAG	3 cut(s)	651, 789, 1055
StyD4I	CCNGG	2 cut(s)	431, 544
StyI	CCWWGG	2 cut(s)	157, 1192
TaaI	ACNGT	1 cut(s)	139
TaiI	ACGT	2 cut(s)	418, 953
TaqI	TCGA	5 cut(s)	21, 521, 1041, 1101, 1365
TasI	AATT	9 cut(s)	352, 497, 601, 742, 888, 1014, 1029, 1296, 1311
TatI	WGTACW	1 cut(s)	87
TfiI	GAWTC	3 cut(s)	641, 899, 1228
Tru1I	TTAA	3 cut(s)	57, 105, 740
Tru9I	TTAA	3 cut(s)	57, 105, 740
TscAI	CASTG	2 cut(s)	852, 1204
TseFI	GTSAC	1 cut(s)	951
TseI	GCWGC	4 cut(s)	573, 713, 914, 971
Tsp45I	GTSAC	1 cut(s)	951
TspDTI	ATGAA	8 cut(s)	54, 399, 497, 594, 702, 924, 1087, 1241
TspGWI	ACGGA	1 cut(s)	165
TspRI	CASTG	2 cut(s)	852, 1204
Tth111I	GACNNNGTC	1 cut(s)	123
Van91I	CCANNNNNTGG	1 cut(s)	545
VpaK11BI	GGWCC	1 cut(s)	214
XapI	RAATTY	2 cut(s)	601, 1014
XbaI	TCTAGA	1 cut(s)	1054
XceI	RCATGY	2 cut(s)	683, 1039
XspI	CTAG	3 cut(s)	651, 789, 1055
ZrmI	AGTACT	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.