Rw2G045210

Histone-lysine N-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0005855
Physical Location & Seq
Reverse (-)
72131168 .. 72134506
3339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G045210.1

Sequence Viewer

Length: 1245 bp
ATGGAGAGCGAGTGCCCAATCGACGCAGAGCTCGGCAATGAAATCTCTGAGCTTCTTAAACCTCCATCCCCTGCAAAAGTAGAGGAGTACTTGAACCGGCTCATTAAAACCAGCACCAGACAATGTCATGGCATCACAGTCAAACACAACGGAGACCTTGGCAAAGGTGTTTACGCTGACTCGGACTTGGAAGGAGATGAGCTTCTCCTCAAGGACCAAATGCTTGTGGGTCTTCAGCATTCTTCTAACAAGATTGAGTGTTTAGTGTGTAGCTTCTGTTTCCGTTTTGTTGGCTCTGTTGAGCTTCAAATAGGGAGGAGGCTTTATCTTCAAGAAATGGGAGTTTCTGCCAATTGTTGTCAGACTGATTACTCTTCTGATGAAGAAGAAGAAGAGGAGGAGATGGGGCAACGTGGTTCCAGCAGTTCCGGGTACAAAGGGAAGGTTCCTCTTCCTAAAGGGATTGCACACTCTTTGATGAATGGTGAACTCAAATTGCCCTACTCTGATAAGTTTTCGATGCCTCCTGCTGTTCCATGTCCTGGTGGCTGTGGAGAAGCTTATTACTGCAGCAAACTATGTGCAGAGTCTGATTGGAATTCATCCCATTCCTTACTTTGCACGGGGGAGAAGTCAGAATCAGTCTCTAGGGAGGCCCTTGTGAAGTTTATACAGCATGCCAATGAAACCAATGATATATTCCTCCTTGCTGCGAAGGTAGTGGCTTCCACCATTTTAAATTATAGGAAGTTGAAAGTAACTCAGTCTGAAGGAGACAATAAGCCTAGCGTTTCAGGGAGTCCATATCTATCCTTACTCTTAGAAGCATGGAAGCCAATATCAGTGGGACACAAGAGAAGGTGGTGGGACTGCGTTGCGTTGCCAATTGATGTTGAATCTTCTGATGAAGCTGCATTTAGGATGCAAATAAGAGAGCTGGCATTCACGTCACTTCAGCTCCTAAAAGCAGCCATCTTTGATGAGGAATGTAAACCAATATTCTCCCTTGAAATTTATGGACATATAATTGGCATGTTCGAGTTGAATAATCTAGATTTGGTTGTAGCATCTCCTGTGGAAGATTATTTTTTATACATCGATGATCTTCCAGATCCTATAAAGAAAGAAGTTGAGGAGATTACACGACCATTTTTGGATGCTCTTGGTGATGACTATTCAGTTTGTTGCCAAGGTATGATGTCTTTTTCTGGTTTCTTTTCTATCCAAATCTTGAAAGTACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SET zf-MYND

Protein Analysis

414

Amino Acids

46.03

Weight (kDa)

4.77

Isoelectric Point (pI)

50.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-MYND PF01753 179 - 207 7.1e-06 MYND finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 542
AclWI GGATC 1 cut(s) 1106
AcsI RAATTY 2 cut(s) 598, 1011
AcuI CTGAAG 3 cut(s) 218, 789, 938
AfaI GTAC 3 cut(s) 89, 434, 1239
AfiI CCNNNNNNNGG 1 cut(s) 542
AgsI TTSAA 8 cut(s) 94, 308, 332, 754, 896, 1010, 1045, 1234
AjiI CACGTC 1 cut(s) 948
AjnI CCWGG 1 cut(s) 541
AjuI GAANNNNNNNTTGG 2 cut(s) 683, 715
AluBI AGCT 9 cut(s) 31, 52, 202, 273, 304, 560, 911, 937, 958
AluI AGCT 9 cut(s) 31, 52, 202, 273, 304, 560, 911, 937, 958
Alw21I GWGCWC 1 cut(s) 33
Alw26I GTCTC 3 cut(s) 147, 649, 768
AlwI GGATC 1 cut(s) 1106
AlwNI CAGNNNCTG 1 cut(s) 590
AoxI GGCC 1 cut(s) 654
ApeKI GCWGC 4 cut(s) 570, 710, 911, 968
ApoI RAATTY 2 cut(s) 598, 1011
AspS9I GGNCC 2 cut(s) 214, 655
AsuC2I CCSGG 1 cut(s) 430
AsuHPI GGTGA 2 cut(s) 497, 1178
AvaII GGWCC 1 cut(s) 214
BaeGI GKGCMC 1 cut(s) 17
BanII GRGCYC 1 cut(s) 33
BbsI GAAGAC 1 cut(s) 224
Bbv12I GWGCWC 1 cut(s) 33
BbvI GCAGC 4 cut(s) 582, 697, 898, 980
BccI CCATC 3 cut(s) 73, 397, 980
BciT130I CCWGG 1 cut(s) 543
BcnI CCSGG 1 cut(s) 430
BcoDI GTCTC 3 cut(s) 147, 649, 768
BfaI CTAG 3 cut(s) 648, 786, 1052
BfmI CTRYAG 1 cut(s) 568
BisI GCNGC 4 cut(s) 571, 711, 912, 969
BlsI GCNGC 4 cut(s) 572, 712, 913, 970
BmcAI AGTACT 2 cut(s) 89, 1239
Bme1390I CCNGG 2 cut(s) 430, 543
Bme18I GGWCC 1 cut(s) 214
BmgBI CACGTC 1 cut(s) 948
BmgT120I GGNCC 2 cut(s) 214, 655
BmiI GGNNCC 2 cut(s) 418, 447
BmrFI CCNGG 2 cut(s) 430, 543
BmsI GCATC 5 cut(s) 141, 510, 912, 1076, 1147
BpiI GAAGAC 1 cut(s) 224
BpuEI CTTGAG 1 cut(s) 194
BpuMI CCSGG 1 cut(s) 430
Bsa29I ATCGAT 1 cut(s) 1098
BsaI GGTCTC 1 cut(s) 147
BsaJI CCNNGG 2 cut(s) 157, 1189
BsaXI ACNNNNNCTCC 3 cut(s) 26, 942, 972
Bsc4I CCNNNNNNNGG 1 cut(s) 542
Bse118I RCCGGY 1 cut(s) 96
Bse3DI GCAATG 1 cut(s) 43
BseBI CCWGG 1 cut(s) 543
BseCI ATCGAT 1 cut(s) 1098
BseDI CCNNGG 2 cut(s) 157, 1189
BseGI GGATG 4 cut(s) 65, 602, 927, 1162
BseLI CCNNNNNNNGG 1 cut(s) 542
BseMI GCAATG 1 cut(s) 43
BseMII CTCAG 2 cut(s) 39, 776
BseRI GAGGAG 6 cut(s) 98, 197, 331, 410, 413, 1148
BseSI GKGCMC 1 cut(s) 17
BseXI GCAGC 4 cut(s) 582, 697, 898, 980
BsgI GTGCAG 1 cut(s) 603
BshFI GGCC 1 cut(s) 656
BshVI ATCGAT 1 cut(s) 1098
BsiHKAI GWGCWC 1 cut(s) 33
BsiSI CCGG 2 cut(s) 97, 429
BslFI GGGAC 2 cut(s) 861, 881
BslI CCNNNNNNNGG 1 cut(s) 542
BsmAI GTCTC 3 cut(s) 147, 649, 768
BsmFI GGGAC 2 cut(s) 861, 881
BsmI GAATGC 2 cut(s) 238, 941
BsnI GGCC 1 cut(s) 656
Bso31I GGTCTC 1 cut(s) 147
Bsp1286I GDGCHC 2 cut(s) 17, 33
Bsp143I GATC 2 cut(s) 1102, 1111
BspANI GGCC 1 cut(s) 656
BspCNI CTCAG 2 cut(s) 40, 775
BspDI ATCGAT 1 cut(s) 1098
BspLI GGNNCC 2 cut(s) 418, 447
BspMAI CTGCAG 1 cut(s) 572
BspPI GGATC 1 cut(s) 1106
BspTNI GGTCTC 1 cut(s) 147
BsrDI GCAATG 1 cut(s) 43
BsrFI RCCGGY 1 cut(s) 96
BssAI RCCGGY 1 cut(s) 96
BssECI CCNNGG 2 cut(s) 157, 1189
BssMI GATC 2 cut(s) 1102, 1111
BssT1I CCWWGG 2 cut(s) 157, 1189
Bst2UI CCWGG 1 cut(s) 543
Bst4CI ACNGT 1 cut(s) 139
Bst6I CTCTTC 3 cut(s) 379, 387, 456
BstC8I GCNNGC 2 cut(s) 678, 939
BstDEI CTNAG 3 cut(s) 48, 762, 820
BstF5I GGATG 4 cut(s) 65, 602, 927, 1162
BstKTI GATC 2 cut(s) 1105, 1114
BstMAI GTCTC 3 cut(s) 147, 649, 768
BstMBI GATC 2 cut(s) 1102, 1111
BstNI CCWGG 1 cut(s) 543
BstNSI RCATGY 2 cut(s) 680, 1036
BstSCI CCNGG 2 cut(s) 428, 541
BstSFI CTRYAG 1 cut(s) 568
BstSLI GKGCMC 1 cut(s) 17
BstV1I GCAGC 4 cut(s) 582, 697, 898, 980
BstV2I GAAGAC 1 cut(s) 224
BstX2I RGATCY 1 cut(s) 1111
BstYI RGATCY 1 cut(s) 1111
Bsu15I ATCGAT 1 cut(s) 1098
BsuRI GGCC 1 cut(s) 656
BsuTUI ATCGAT 1 cut(s) 1098
BtrI CACGTC 1 cut(s) 948
BtsCI GGATG 4 cut(s) 65, 602, 927, 1162
BtsIMutI CAGTG 1 cut(s) 849
Cac8I GCNNGC 2 cut(s) 678, 939
CaiI CAGNNNCTG 1 cut(s) 590
Cfr10I RCCGGY 1 cut(s) 96
Cfr13I GGNCC 2 cut(s) 214, 655
ClaI ATCGAT 1 cut(s) 1098
CseI GACGC 1 cut(s) 32
Csp6I GTAC 3 cut(s) 88, 433, 1238
CspCI CAANNNNNGTGG 2 cut(s) 825, 860
CviAII CATG 5 cut(s) 128, 537, 677, 828, 1033
CviQI GTAC 3 cut(s) 88, 433, 1238
DdeI CTNAG 3 cut(s) 48, 762, 820
DpnI GATC 2 cut(s) 1104, 1113
DpnII GATC 2 cut(s) 1102, 1111
DraI TTTAAA 1 cut(s) 738
Eam1104I CTCTTC 3 cut(s) 379, 387, 456
EarI CTCTTC 3 cut(s) 379, 387, 456
Ecl136II GAGCTC 1 cut(s) 31
Eco130I CCWWGG 2 cut(s) 157, 1189
Eco24I GRGCYC 1 cut(s) 33
Eco31I GGTCTC 1 cut(s) 147
Eco47I GGWCC 1 cut(s) 214
Eco53kI GAGCTC 1 cut(s) 31
Eco57I CTGAAG 3 cut(s) 218, 789, 938
EcoICRI GAGCTC 1 cut(s) 31
EcoO109I RGGNCCY 1 cut(s) 655
EcoRI GAATTC 1 cut(s) 598
EcoRII CCWGG 1 cut(s) 541
EcoT14I CCWWGG 2 cut(s) 157, 1189
EcoT38I GRGCYC 1 cut(s) 33
ErhI CCWWGG 2 cut(s) 157, 1189
FaeI CATG 5 cut(s) 131, 540, 680, 831, 1036
FaqI GGGAC 2 cut(s) 861, 881
FatI CATG 5 cut(s) 127, 536, 676, 827, 1032
Fnu4HI GCNGC 4 cut(s) 571, 711, 912, 969
FokI GGATG 4 cut(s) 52, 589, 934, 1169
FriOI GRGCYC 1 cut(s) 33
Fsp4HI GCNGC 4 cut(s) 571, 711, 912, 969
FspBI CTAG 3 cut(s) 648, 786, 1052
GluI GCNGC 4 cut(s) 571, 711, 912, 969
HaeIII GGCC 1 cut(s) 656
HapII CCGG 2 cut(s) 97, 429
HgaI GACGC 1 cut(s) 32
Hin1II CATG 5 cut(s) 131, 540, 680, 831, 1036
HindIII AAGCTT 1 cut(s) 558
HinfI GANTC 5 cut(s) 179, 587, 638, 799, 896
HpaII CCGG 2 cut(s) 97, 429
HphI GGTGA 2 cut(s) 497, 1178
Hpy166II GTNNAC 3 cut(s) 172, 488, 992
Hpy188I TCNGA 9 cut(s) 49, 184, 363, 379, 508, 592, 637, 769, 904
Hpy188III TCNNGA 4 cut(s) 332, 1052, 1109, 1231
Hpy8I GTNNAC 3 cut(s) 172, 488, 992
Hpy99I CGWCG 1 cut(s) 26
HpyAV CCTTC 5 cut(s) 185, 436, 709, 764, 852
HpyCH4III ACNGT 1 cut(s) 139
HpyCH4IV ACGT 2 cut(s) 412, 947
HpyCH4V TGCA 7 cut(s) 74, 467, 570, 584, 621, 914, 925
HpyF3I CTNAG 3 cut(s) 48, 762, 820
HpySE526I ACGT 2 cut(s) 412, 947
Hsp92II CATG 5 cut(s) 131, 540, 680, 831, 1036
Kzo9I GATC 2 cut(s) 1102, 1111
LmnI GCTCC 1 cut(s) 963
Lsp1109I GCAGC 4 cut(s) 582, 697, 898, 980
LweI GCATC 5 cut(s) 141, 510, 912, 1076, 1147
MaeI CTAG 3 cut(s) 648, 786, 1052
MaeII ACGT 2 cut(s) 412, 947
MaeIII GTNAC 2 cut(s) 757, 948
MalI GATC 2 cut(s) 1104, 1113
MboI GATC 2 cut(s) 1102, 1111
MfeI CAATTG 2 cut(s) 352, 885
MflI RGATCY 1 cut(s) 1111
MhlI GDGCHC 2 cut(s) 17, 33
MluCI AATT 7 cut(s) 352, 494, 598, 739, 885, 1011, 1026
MlyI GAGTC 3 cut(s) 173, 596, 808
MseI TTAA 3 cut(s) 57, 105, 737
MslI CAYNNNNRTG 1 cut(s) 681
MspI CCGG 2 cut(s) 97, 429
MspR9I CCNGG 2 cut(s) 430, 543
MunI CAATTG 2 cut(s) 352, 885
Mva1269I GAATGC 2 cut(s) 238, 941
MvaI CCWGG 1 cut(s) 543
NciI CCSGG 1 cut(s) 430
NdeII GATC 2 cut(s) 1102, 1111
NlaIII CATG 5 cut(s) 131, 540, 680, 831, 1036
NlaIV GGNNCC 2 cut(s) 418, 447
NmeAIII GCCGAG 1 cut(s) 12
NmuCI GTSAC 1 cut(s) 948
NspI RCATGY 2 cut(s) 680, 1036
PaeI GCATGC 1 cut(s) 680
PctI GAATGC 2 cut(s) 238, 941
PfeI GAWTC 2 cut(s) 638, 896
PflFI GACNNNGTC 1 cut(s) 123
PflMI CCANNNNNTGG 1 cut(s) 542
PkrI GCNGC 4 cut(s) 572, 712, 913, 970
PleI GAGTC 3 cut(s) 173, 595, 807
PpsI GAGTC 3 cut(s) 173, 595, 807
Psp124BI GAGCTC 1 cut(s) 33
Psp6I CCWGG 1 cut(s) 541
PspGI CCWGG 1 cut(s) 541
PspN4I GGNNCC 2 cut(s) 418, 447
PspPI GGNCC 2 cut(s) 214, 655
PstI CTGCAG 1 cut(s) 572
PstNI CAGNNNCTG 1 cut(s) 590
PsuI RGATCY 1 cut(s) 1111
PsyI GACNNNGTC 1 cut(s) 123
RsaI GTAC 3 cut(s) 89, 434, 1239
RsaNI GTAC 3 cut(s) 88, 433, 1238
RseI CAYNNNNRTG 1 cut(s) 681
SacI GAGCTC 1 cut(s) 33
SaqAI TTAA 3 cut(s) 57, 105, 737
SatI GCNGC 4 cut(s) 571, 711, 912, 969
Sau3AI GATC 2 cut(s) 1102, 1111
Sau96I GGNCC 2 cut(s) 214, 655
ScaI AGTACT 2 cut(s) 89, 1239
SchI GAGTC 3 cut(s) 173, 596, 808
ScrFI CCNGG 2 cut(s) 430, 543
SduI GDGCHC 2 cut(s) 17, 33
SfaNI GCATC 5 cut(s) 141, 510, 912, 1076, 1147
SfcI CTRYAG 1 cut(s) 568
SinI GGWCC 1 cut(s) 214
SmiMI CAYNNNNRTG 1 cut(s) 681
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
SphI GCATGC 1 cut(s) 680
Sse9I AATT 7 cut(s) 352, 494, 598, 739, 885, 1011, 1026
SspI AATATT 1 cut(s) 999
SspMI CTAG 3 cut(s) 648, 786, 1052
SstI GAGCTC 1 cut(s) 33
StyD4I CCNGG 2 cut(s) 428, 541
StyI CCWWGG 2 cut(s) 157, 1189
TaaI ACNGT 1 cut(s) 139
TaiI ACGT 2 cut(s) 415, 950
TaqI TCGA 4 cut(s) 21, 518, 1038, 1098
TasI AATT 7 cut(s) 352, 494, 598, 739, 885, 1011, 1026
TatI WGTACW 2 cut(s) 87, 1237
TfiI GAWTC 2 cut(s) 638, 896
Tru1I TTAA 3 cut(s) 57, 105, 737
Tru9I TTAA 3 cut(s) 57, 105, 737
TscAI CASTG 1 cut(s) 849
TseFI GTSAC 1 cut(s) 948
TseI GCWGC 4 cut(s) 570, 710, 911, 968
Tsp45I GTSAC 1 cut(s) 948
TspDTI ATGAA 6 cut(s) 54, 396, 494, 591, 699, 921
TspGWI ACGGA 2 cut(s) 165, 272
TspRI CASTG 1 cut(s) 849
Tth111I GACNNNGTC 1 cut(s) 123
Van91I CCANNNNNTGG 1 cut(s) 542
VpaK11BI GGWCC 1 cut(s) 214
XapI RAATTY 2 cut(s) 598, 1011
XbaI TCTAGA 1 cut(s) 1051
XceI RCATGY 2 cut(s) 680, 1036
XspI CTAG 3 cut(s) 648, 786, 1052
ZrmI AGTACT 2 cut(s) 89, 1239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.