RLG00000021195

Histone-lysine N-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0005855
Physical Location & Seq
Reverse (-)
72818573 .. 72821600
3028 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021195

Sequence Viewer

Length: 1434 bp
ATGGAGAGCGAGTGCCCAATCGATGCTGAGCTCCGCAATGAAATCTCTGAGCTTCTTAAACCTCCATCCCCTGCAAATGTAGAGGAGTACTTGAACCAGCTCATTACAACCAGCACCAGACAATGCCATGGCATCACAGTCAAACACAACGGAGACCTTGGCAAAGGTGTTTACGCTGACTCGGACTTGGAAGGAGATGAGCTTCTCCTCAAGGACCAAATGCTTGTGGGTCTTCAGCATTCTTCTAACAAGATTGAGTGTTTAGTGTGTAGCTTCTGTTTCCGTTTTGTTGGCTCTGTTGAGCTTCAAATAGGGAGGAGGCTTTATCTTCAAGAAATGGGAGTTTCTGCCAATTGTTGTCAGACTGATTACTCATCTGATGATGAAGAAGAGGAGGAGTTTGGGCAATGTGGTTCGAGCAGTTCCAGGTACAAAGAGAAGCTTCCCCTTCCTAAAGGGATTGCACAGTCTTTGATGAATGGTGAACTCAAATTGCCCTACTCCGATAAGTTTTCGATGCCTCCTGCTGTTCCATGTCCTGGTGGCTGTGGAGAAGCTTATTACTGCAGCAAACTATGTGCAGAGTCTGATTGGAGTTCATCCCATTCGTTACTTTGCACGGGGGAGAGGTCAGAATCAGTCTCTAGGGAGGCACTTGTGAAGTTTATACAGCATGCCAATGAAACCAATGATATATTCCTCCTTGCTGCGAAGGTAGTGGCTTCCACTGTTTTAACTTACAGGAAGTTGAAAGTAACTCGGTCTAAAGGAGACAATAAGCCTAGTGTTTCAGGGAGTCCATATCTATCCTTACTCTTAGAAGCATGGAAGCCAATATCGGTGGGACACAAGAGAAGGTGGTGGGACTGTGTTGCATTGCCAATTGATGTCGAATCTTCTGATGAAGCTGCATTTAGGATGCAAATAAGAGAGCTGGCATTCACGTCACTACAGCTCCTAAAAGCAGCCATCTTTGATGAGGAATGTAAACCAATATTCTCCCTTGAAATTTATGGACATATAATTGGCATGTTCGAGTTGAATAATCTAGATTTGGTTGTAGCATCTCCTGTGGAAGATTATTTTATATACATTGATGATCTTCCAGATCCTATAAGGAAAGAAGCTGAGGAGATTACACGACCATTTTTGGATGCTCTTGGTGATGACTATTCAGTTTGTTGCCAGGGCACTGCATTTTATCCTCTACAGAGTTGTATGAATCATTCTTGTAGTCCCAATGCCAAAGCATTCAAAAGAGAGGAGGACAGAGATGGTCAAGCAACAATAATTGCACGAAAACCAATTTCCAAGGGAGAGGAGGTTACTATTTCTTATGTGGATGAGGACATTCCTTTTGAGGAGAGACTAGCATTACTTGCAGATTATGGTTTTAGATGCAGGTGTCCAAGGTGCTTAGAAGAAGAACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SET zf-MYND

Protein Analysis

478

Amino Acids

53.36

Weight (kDa)

4.76

Isoelectric Point (pI)

55.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-MYND PF01753 178 - 206 9.4e-06 MYND finger
SET PF00856 376 - 446 3.7e-11 SET domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1392
Acc36I ACCTGC 1 cut(s) 1392
AccB7I CCANNNNNTGG 1 cut(s) 539
AciI CCGC 1 cut(s) 34
AclWI GGATC 1 cut(s) 1103
AcsI RAATTY 1 cut(s) 1008
AcuI CTGAAG 1 cut(s) 218
AfaI GTAC 2 cut(s) 89, 431
AfiI CCNNNNNNNGG 1 cut(s) 539
AgsI TTSAA 7 cut(s) 94, 308, 332, 751, 1007, 1042, 1255
AjiI CACGTC 1 cut(s) 945
AjnI CCWGG 3 cut(s) 425, 538, 1185
AjuI GAANNNNNNNTTGG 2 cut(s) 680, 712
Alw21I GWGCWC 1 cut(s) 33
Alw26I GTCTC 4 cut(s) 147, 646, 765, 1360
AlwI GGATC 1 cut(s) 1103
AlwNI CAGNNNCTG 1 cut(s) 587
ApeKI GCWGC 4 cut(s) 567, 707, 908, 965
ApoI RAATTY 1 cut(s) 1008
ArsI GACNNNNNNTTYG 2 cut(s) 1340, 1372
AspS9I GGNCC 1 cut(s) 214
AsuHPI GGTGA 2 cut(s) 494, 1175
AvaII GGWCC 1 cut(s) 214
BaeGI GKGCMC 2 cut(s) 17, 1193
BanII GRGCYC 1 cut(s) 33
BbsI GAAGAC 1 cut(s) 224
Bbv12I GWGCWC 1 cut(s) 33
BbvCI CCTCAGC 1 cut(s) 1128
BbvI GCAGC 4 cut(s) 579, 694, 895, 977
BccI CCATC 3 cut(s) 73, 977, 1268
BciT130I CCWGG 3 cut(s) 427, 540, 1187
BcoDI GTCTC 4 cut(s) 147, 646, 765, 1360
BfaI CTAG 4 cut(s) 645, 783, 1049, 1370
BfmI CTRYAG 3 cut(s) 565, 950, 1208
BfuAI ACCTGC 1 cut(s) 1392
BisI GCNGC 4 cut(s) 568, 708, 909, 966
BlpI GCTNAGC 1 cut(s) 27
BlsI GCNGC 4 cut(s) 569, 709, 910, 967
BmcAI AGTACT 1 cut(s) 89
Bme1390I CCNGG 3 cut(s) 427, 540, 1187
Bme18I GGWCC 1 cut(s) 214
BmgBI CACGTC 1 cut(s) 945
BmgT120I GGNCC 1 cut(s) 214
BmrFI CCNGG 3 cut(s) 427, 540, 1187
BmsI GCATC 7 cut(s) 13, 141, 507, 909, 1073, 1144, 1388
BpiI GAAGAC 1 cut(s) 224
Bpu10I CCTNAGC 1 cut(s) 1128
Bpu1102I GCTNAGC 1 cut(s) 27
BpuEI CTTGAG 1 cut(s) 194
Bsa29I ATCGAT 1 cut(s) 21
BsaI GGTCTC 1 cut(s) 147
BsaJI CCNNGG 5 cut(s) 127, 157, 1186, 1311, 1409
BsaXI ACNNNNNCTCC 5 cut(s) 26, 939, 969, 1308, 1338
Bsc4I CCNNNNNNNGG 1 cut(s) 539
Bse3DI GCAATG 3 cut(s) 43, 413, 875
BseBI CCWGG 3 cut(s) 427, 540, 1187
BseCI ATCGAT 1 cut(s) 21
BseDI CCNNGG 5 cut(s) 127, 157, 1186, 1311, 1409
BseGI GGATG 5 cut(s) 65, 599, 924, 1159, 1348
BseLI CCNNNNNNNGG 1 cut(s) 539
BseMI GCAATG 3 cut(s) 43, 413, 875
BseMII CTCAG 3 cut(s) 18, 39, 1119
BseRI GAGGAG 9 cut(s) 98, 197, 331, 407, 410, 1145, 1277, 1334, 1376
BseSI GKGCMC 2 cut(s) 17, 1193
BseXI GCAGC 4 cut(s) 579, 694, 895, 977
BsgI GTGCAG 1 cut(s) 600
BshVI ATCGAT 1 cut(s) 21
BsiHKAI GWGCWC 1 cut(s) 33
BslFI GGGAC 3 cut(s) 858, 878, 1221
BslI CCNNNNNNNGG 1 cut(s) 539
BsmAI GTCTC 4 cut(s) 147, 646, 765, 1360
BsmFI GGGAC 3 cut(s) 858, 878, 1221
BsmI GAATGC 3 cut(s) 238, 938, 1250
Bso31I GGTCTC 1 cut(s) 147
Bsp1286I GDGCHC 3 cut(s) 17, 33, 1193
Bsp143I GATC 2 cut(s) 1099, 1108
Bsp1720I GCTNAGC 1 cut(s) 27
Bsp19I CCATGG 1 cut(s) 127
BspACI CCGC 1 cut(s) 34
BspCNI CTCAG 3 cut(s) 19, 40, 1120
BspDI ATCGAT 1 cut(s) 21
BspMAI CTGCAG 1 cut(s) 569
BspMI ACCTGC 1 cut(s) 1392
BspPI GGATC 1 cut(s) 1103
BspTNI GGTCTC 1 cut(s) 147
BsrDI GCAATG 3 cut(s) 43, 413, 875
BssECI CCNNGG 5 cut(s) 127, 157, 1186, 1311, 1409
BssMI GATC 2 cut(s) 1099, 1108
BssT1I CCWWGG 4 cut(s) 127, 157, 1311, 1409
Bst2UI CCWGG 3 cut(s) 427, 540, 1187
Bst4CI ACNGT 4 cut(s) 139, 468, 730, 869
Bst6I CTCTTC 1 cut(s) 384
BstAPI GCANNNNNTGC 1 cut(s) 1379
BstC8I GCNNGC 2 cut(s) 675, 936
BstDEI CTNAG 5 cut(s) 27, 48, 817, 1128, 1417
BstDSI CCRYGG 1 cut(s) 127
BstF5I GGATG 5 cut(s) 65, 599, 924, 1159, 1348
BstKTI GATC 2 cut(s) 1102, 1111
BstMAI GTCTC 4 cut(s) 147, 646, 765, 1360
BstMBI GATC 2 cut(s) 1099, 1108
BstMWI GCNNNNNNNGC 1 cut(s) 1379
BstNI CCWGG 3 cut(s) 427, 540, 1187
BstNSI RCATGY 2 cut(s) 677, 1033
BstSCI CCNGG 3 cut(s) 425, 538, 1185
BstSFI CTRYAG 3 cut(s) 565, 950, 1208
BstSLI GKGCMC 2 cut(s) 17, 1193
BstV1I GCAGC 4 cut(s) 579, 694, 895, 977
BstV2I GAAGAC 1 cut(s) 224
BstX2I RGATCY 1 cut(s) 1108
BstYI RGATCY 1 cut(s) 1108
Bsu15I ATCGAT 1 cut(s) 21
BsuTUI ATCGAT 1 cut(s) 21
BtgI CCRYGG 1 cut(s) 127
BtrI CACGTC 1 cut(s) 945
BtsCI GGATG 5 cut(s) 65, 599, 924, 1159, 1348
BtsI GCAGTG 1 cut(s) 1191
BtsIMutI CAGTG 2 cut(s) 726, 1191
BveI ACCTGC 1 cut(s) 1392
Cac8I GCNNGC 2 cut(s) 675, 936
CaiI CAGNNNCTG 1 cut(s) 587
Cfr13I GGNCC 1 cut(s) 214
ClaI ATCGAT 1 cut(s) 21
Csp6I GTAC 2 cut(s) 88, 430
CspCI CAANNNNNGTGG 2 cut(s) 822, 857
CviAII CATG 5 cut(s) 128, 534, 674, 825, 1030
CviQI GTAC 2 cut(s) 88, 430
DdeI CTNAG 5 cut(s) 27, 48, 817, 1128, 1417
DpnI GATC 2 cut(s) 1101, 1110
DpnII GATC 2 cut(s) 1099, 1108
Eam1104I CTCTTC 1 cut(s) 384
EarI CTCTTC 1 cut(s) 384
Ecl136II GAGCTC 1 cut(s) 31
Eco130I CCWWGG 4 cut(s) 127, 157, 1311, 1409
Eco24I GRGCYC 1 cut(s) 33
Eco31I GGTCTC 1 cut(s) 147
Eco47I GGWCC 1 cut(s) 214
Eco53kI GAGCTC 1 cut(s) 31
Eco57I CTGAAG 1 cut(s) 218
EcoICRI GAGCTC 1 cut(s) 31
EcoRII CCWGG 3 cut(s) 425, 538, 1185
EcoT14I CCWWGG 4 cut(s) 127, 157, 1311, 1409
EcoT38I GRGCYC 1 cut(s) 33
ErhI CCWWGG 4 cut(s) 127, 157, 1311, 1409
FaeI CATG 5 cut(s) 131, 537, 677, 828, 1033
FalI AAGNNNNNCTT 2 cut(s) 426, 458
FaqI GGGAC 3 cut(s) 858, 878, 1221
FatI CATG 5 cut(s) 127, 533, 673, 824, 1029
Fnu4HI GCNGC 4 cut(s) 568, 708, 909, 966
FokI GGATG 5 cut(s) 52, 586, 931, 1166, 1355
FriOI GRGCYC 1 cut(s) 33
Fsp4HI GCNGC 4 cut(s) 568, 708, 909, 966
FspBI CTAG 4 cut(s) 645, 783, 1049, 1370
GluI GCNGC 4 cut(s) 568, 708, 909, 966
Hin1II CATG 5 cut(s) 131, 537, 677, 828, 1033
HindIII AAGCTT 2 cut(s) 440, 555
HinfI GANTC 6 cut(s) 179, 584, 635, 796, 893, 1222
HphI GGTGA 2 cut(s) 494, 1175
Hpy166II GTNNAC 3 cut(s) 172, 485, 989
Hpy188I TCNGA 8 cut(s) 49, 184, 363, 379, 505, 589, 634, 901
Hpy188III TCNNGA 3 cut(s) 332, 1049, 1106
Hpy8I GTNNAC 3 cut(s) 172, 485, 989
HpyAV CCTTC 4 cut(s) 185, 458, 706, 849
HpyCH4III ACNGT 4 cut(s) 139, 468, 730, 869
HpyCH4IV ACGT 1 cut(s) 944
HpyF10VI GCNNNNNNNGC 1 cut(s) 1379
HpyF3I CTNAG 5 cut(s) 27, 48, 817, 1128, 1417
HpySE526I ACGT 1 cut(s) 944
Hsp92II CATG 5 cut(s) 131, 537, 677, 828, 1033
Kzo9I GATC 2 cut(s) 1099, 1108
LmnI GCTCC 2 cut(s) 36, 960
Lsp1109I GCAGC 4 cut(s) 579, 694, 895, 977
LweI GCATC 7 cut(s) 13, 141, 507, 909, 1073, 1144, 1388
MaeI CTAG 4 cut(s) 645, 783, 1049, 1370
MaeII ACGT 1 cut(s) 944
MaeIII GTNAC 4 cut(s) 609, 754, 945, 1324
MalI GATC 2 cut(s) 1101, 1110
MboI GATC 2 cut(s) 1099, 1108
MboII GAAGA 9 cut(s) 224, 234, 320, 398, 401, 888, 1088, 1094, 1433
MfeI CAATTG 2 cut(s) 352, 882
MflI RGATCY 1 cut(s) 1108
MhlI GDGCHC 3 cut(s) 17, 33, 1193
MluCI AATT 7 cut(s) 352, 491, 882, 1008, 1023, 1290, 1305
MlyI GAGTC 3 cut(s) 173, 593, 805
MseI TTAA 2 cut(s) 57, 734
MslI CAYNNNNRTG 1 cut(s) 678
MspR9I CCNGG 3 cut(s) 427, 540, 1187
MunI CAATTG 2 cut(s) 352, 882
Mva1269I GAATGC 3 cut(s) 238, 938, 1250
MvaI CCWGG 3 cut(s) 427, 540, 1187
MwoI GCNNNNNNNGC 1 cut(s) 1379
NcoI CCATGG 1 cut(s) 127
NdeII GATC 2 cut(s) 1099, 1108
NlaIII CATG 5 cut(s) 131, 537, 677, 828, 1033
NmuCI GTSAC 1 cut(s) 945
NspI RCATGY 2 cut(s) 677, 1033
PaeI GCATGC 1 cut(s) 677
PaqCI CACCTGC 1 cut(s) 1392
PctI GAATGC 3 cut(s) 238, 938, 1250
PfeI GAWTC 3 cut(s) 635, 893, 1222
PflMI CCANNNNNTGG 1 cut(s) 539
PkrI GCNGC 4 cut(s) 569, 709, 910, 967
PleI GAGTC 3 cut(s) 173, 592, 804
PpsI GAGTC 3 cut(s) 173, 592, 804
Psp124BI GAGCTC 1 cut(s) 33
Psp6I CCWGG 3 cut(s) 425, 538, 1185
PspGI CCWGG 3 cut(s) 425, 538, 1185
PspPI GGNCC 1 cut(s) 214
PstI CTGCAG 1 cut(s) 569
PstNI CAGNNNCTG 1 cut(s) 587
PsuI RGATCY 1 cut(s) 1108
RsaI GTAC 2 cut(s) 89, 431
RsaNI GTAC 2 cut(s) 88, 430
RseI CAYNNNNRTG 1 cut(s) 678
SacI GAGCTC 1 cut(s) 33
SaqAI TTAA 2 cut(s) 57, 734
SatI GCNGC 4 cut(s) 568, 708, 909, 966
Sau3AI GATC 2 cut(s) 1099, 1108
Sau96I GGNCC 1 cut(s) 214
ScaI AGTACT 1 cut(s) 89
SchI GAGTC 3 cut(s) 173, 593, 805
ScrFI CCNGG 3 cut(s) 427, 540, 1187
SduI GDGCHC 3 cut(s) 17, 33, 1193
SfaNI GCATC 7 cut(s) 13, 141, 507, 909, 1073, 1144, 1388
SfcI CTRYAG 3 cut(s) 565, 950, 1208
SinI GGWCC 1 cut(s) 214
SmiMI CAYNNNNRTG 1 cut(s) 678
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
SphI GCATGC 1 cut(s) 677
Sse9I AATT 7 cut(s) 352, 491, 882, 1008, 1023, 1290, 1305
SsiI CCGC 1 cut(s) 34
SspI AATATT 1 cut(s) 996
SspMI CTAG 4 cut(s) 645, 783, 1049, 1370
SstI GAGCTC 1 cut(s) 33
StyD4I CCNGG 3 cut(s) 425, 538, 1185
StyI CCWWGG 4 cut(s) 127, 157, 1311, 1409
TaaI ACNGT 4 cut(s) 139, 468, 730, 869
TaiI ACGT 1 cut(s) 947
TaqI TCGA 5 cut(s) 21, 416, 515, 891, 1035
TaqII GACCGA 1 cut(s) 750
TasI AATT 7 cut(s) 352, 491, 882, 1008, 1023, 1290, 1305
TatI WGTACW 1 cut(s) 87
TfiI GAWTC 3 cut(s) 635, 893, 1222
Tru1I TTAA 2 cut(s) 57, 734
Tru9I TTAA 2 cut(s) 57, 734
TscAI CASTG 2 cut(s) 733, 1198
TseFI GTSAC 1 cut(s) 945
TseI GCWGC 4 cut(s) 567, 707, 908, 965
Tsp45I GTSAC 1 cut(s) 945
TspDTI ATGAA 7 cut(s) 54, 399, 491, 588, 696, 918, 1235
TspGWI ACGGA 2 cut(s) 165, 272
TspRI CASTG 2 cut(s) 733, 1198
Van91I CCANNNNNTGG 1 cut(s) 539
VpaK11BI GGWCC 1 cut(s) 214
XapI RAATTY 1 cut(s) 1008
XbaI TCTAGA 1 cut(s) 1048
XceI RCATGY 2 cut(s) 677, 1033
XspI CTAG 4 cut(s) 645, 783, 1049, 1370
ZrmI AGTACT 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.