Rh2AG546700

Histone-lysine N-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0005855
Physical Location & Seq
Reverse (-)
77539499 .. 77542528
3030 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG546700.1

Sequence Viewer

Length: 1449 bp
ATGGAGAGCGAGTGCCCAATCGATGCAGAGCTCGGCAATGAAATCTCTGAGCTTCTTAAACCTCCATCCCATGAAAAAGTAGAGGAGTACTTGAACCAGGTCATTAAAACCAGCACCAGACAATGTCATGGCATCACAGTCAAACACAACGGAGACCTTGGCAAAGGTGTTTACGCTGACTCGGACTTGGAAGGAGATGAGCTTCTCCTCAAGGACCAAATGCTTGTGGGTTTTCAGCATTCTTCTAACAAGATTGAGTGTTTAGTGTGTAGCTTCTGTTTCCGTTTTGTTGGCTCTGTTGAGCTTCAAATAGGGAGGAGGCTTTATCTTCAAGAAATGGGAGTTTCTGCCAATTGTTGTCAGACTGATTACTCTTCTGATGATGAAGAAGAAGAAGAAGAAGAAGAAGAGGAGATGGGGCAACGTGGTTCCAGCAGTTCCCGGTACAAAGGGAAGGTTCCTCTTCCTAAAGGGATTGCACACTCTTTGATGAATGGTGAACTCAAATTGCCCTACTCCGGTAAGTTTTCGATGCCTCCTGCTGTTCCATGTCCTGGTGGCTGTGGAGAAGCTTATTACTGCAGCAAACTATGTGCAGAGTCTGATTGGAATTCATCCCATTCCTTACTTTGCACGGGGGAGAAGTCAGAATCAGTCTCTAGGGAGGCCCTTGTGAAGTTTATACAGCATGCCAATGAAACCAATGATATATTCCTCCTTGCTGCGAAGGTAGTGGCTTCCACCATTTTAAATTATAGGAAGTTGAAAGTAACTCGGTCTGAAGGAGACAATAAGCCTAGCGTTTCAGGGAGTCCATATCTATCCTTACTCTTAGAAGCATGGAAGCCAATATCAGTGGGACACAAGAGAAGGTGGTGGGACTGTGTTGCGTTGCCAATTGATGTCGAATCTTCTGATGAAGCTGCATTTAGGATGCAAATAAGAGAGCTGGCATTCACGTCACTACAGCTCCTAAAAGCAGCCATCTTTGATGAGGAATGTAAACCAATATTCTCCCTTGAAATTTATGGACATATAATTGGCATGTTCGAGTTGAATAATCTAGATTTGGTTGTAGCATCTCCTGTCGAAGATTATTTTTTATACATCGATGATCTTCCAGATCCTATAAAGAAAGAAGTTGAGGAGATTACACGACCATTTTTGGATGCTCTTGGTGATGACTATTCAGTTTGTTGCCAAGGCACTGCATTTTATCCTCTTCAGAGTTGTATGAATCATTCTTGTAGTCCCAATGCCAAAGCATTCAAAAGAGAGGAGGACAGAGATGGTCAAGCAACAATAATTGCACTAAAACCAATTTTCAAGGGAGAGGAGGTTACTATTTCTTATGTGGATGAGGACATTCCTTTCGAGGAGAGACAAGCATTACTTGCAGATTATGGTTTTAGATGCAGGTGTCCAAGATGCTTAGAAGAAGAACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SET zf-MYND

Protein Analysis

482

Amino Acids

54.03

Weight (kDa)

4.72

Isoelectric Point (pI)

53.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-MYND PF01753 183 - 211 9e-06 MYND finger
SET PF00856 377 - 451 5.4e-11 SET domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1407
Acc36I ACCTGC 1 cut(s) 1407
AccB7I CCANNNNNTGG 1 cut(s) 554
AclWI GGATC 1 cut(s) 1118
AcsI RAATTY 2 cut(s) 610, 1023
AcuI CTGAAG 2 cut(s) 801, 1208
AfaI GTAC 2 cut(s) 89, 446
AfiI CCNNNNNNNGG 2 cut(s) 518, 554
AgsI TTSAA 8 cut(s) 94, 308, 332, 766, 1022, 1057, 1270, 1327
AjiI CACGTC 1 cut(s) 960
AjnI CCWGG 2 cut(s) 96, 553
AjuI GAANNNNNNNTTGG 2 cut(s) 695, 727
AluBI AGCT 9 cut(s) 31, 52, 202, 273, 304, 572, 923, 949, 970
AluI AGCT 9 cut(s) 31, 52, 202, 273, 304, 572, 923, 949, 970
Alw21I GWGCWC 1 cut(s) 33
Alw26I GTCTC 4 cut(s) 147, 661, 780, 1375
AlwI GGATC 1 cut(s) 1118
AlwNI CAGNNNCTG 1 cut(s) 602
AoxI GGCC 1 cut(s) 666
ApeKI GCWGC 4 cut(s) 582, 722, 923, 980
ApoI RAATTY 2 cut(s) 610, 1023
ArsI GACNNNNNNTTYG 2 cut(s) 1355, 1387
AspS9I GGNCC 2 cut(s) 214, 667
AsuC2I CCSGG 1 cut(s) 442
AsuHPI GGTGA 2 cut(s) 509, 1190
AvaII GGWCC 1 cut(s) 214
BaeGI GKGCMC 1 cut(s) 17
BanII GRGCYC 1 cut(s) 33
Bbv12I GWGCWC 1 cut(s) 33
BbvI GCAGC 4 cut(s) 594, 709, 910, 992
BccI CCATC 4 cut(s) 73, 409, 992, 1283
BciT130I CCWGG 2 cut(s) 98, 555
BcnI CCSGG 1 cut(s) 442
BcoDI GTCTC 4 cut(s) 147, 661, 780, 1375
BfaI CTAG 3 cut(s) 660, 798, 1064
BfmI CTRYAG 2 cut(s) 580, 965
BfuAI ACCTGC 1 cut(s) 1407
BisI GCNGC 4 cut(s) 583, 723, 924, 981
BlsI GCNGC 4 cut(s) 584, 724, 925, 982
BmcAI AGTACT 1 cut(s) 89
Bme1390I CCNGG 3 cut(s) 98, 442, 555
Bme18I GGWCC 1 cut(s) 214
BmgBI CACGTC 1 cut(s) 960
BmgT120I GGNCC 2 cut(s) 214, 667
BmiI GGNNCC 2 cut(s) 430, 459
BmrFI CCNGG 3 cut(s) 98, 442, 555
BmsI GCATC 8 cut(s) 13, 141, 522, 924, 1088, 1159, 1403, 1418
BpuEI CTTGAG 1 cut(s) 194
BpuMI CCSGG 1 cut(s) 442
Bsa29I ATCGAT 2 cut(s) 21, 1110
BsaI GGTCTC 1 cut(s) 147
BsaJI CCNNGG 2 cut(s) 157, 1201
BsaWI WCCGGW 1 cut(s) 518
BsaXI ACNNNNNCTCC 5 cut(s) 26, 954, 984, 1323, 1353
Bsc4I CCNNNNNNNGG 2 cut(s) 518, 554
Bse3DI GCAATG 1 cut(s) 43
BseBI CCWGG 2 cut(s) 98, 555
BseCI ATCGAT 2 cut(s) 21, 1110
BseDI CCNNGG 2 cut(s) 157, 1201
BseGI GGATG 5 cut(s) 65, 614, 939, 1174, 1363
BseLI CCNNNNNNNGG 2 cut(s) 518, 554
BseMI GCAATG 1 cut(s) 43
BseMII CTCAG 1 cut(s) 39
BseRI GAGGAG 8 cut(s) 98, 197, 331, 425, 1160, 1292, 1349, 1391
BseSI GKGCMC 1 cut(s) 17
BseXI GCAGC 4 cut(s) 594, 709, 910, 992
BsgI GTGCAG 1 cut(s) 615
BshFI GGCC 1 cut(s) 668
BshVI ATCGAT 2 cut(s) 21, 1110
BsiHKAI GWGCWC 1 cut(s) 33
BsiSI CCGG 2 cut(s) 442, 519
BslFI GGGAC 3 cut(s) 873, 893, 1236
BslI CCNNNNNNNGG 2 cut(s) 518, 554
BsmAI GTCTC 4 cut(s) 147, 661, 780, 1375
BsmFI GGGAC 3 cut(s) 873, 893, 1236
BsmI GAATGC 3 cut(s) 238, 953, 1265
BsnI GGCC 1 cut(s) 668
Bso31I GGTCTC 1 cut(s) 147
Bsp1286I GDGCHC 2 cut(s) 17, 33
Bsp143I GATC 2 cut(s) 1114, 1123
BspANI GGCC 1 cut(s) 668
BspCNI CTCAG 1 cut(s) 40
BspDI ATCGAT 2 cut(s) 21, 1110
BspLI GGNNCC 2 cut(s) 430, 459
BspMAI CTGCAG 1 cut(s) 584
BspMI ACCTGC 1 cut(s) 1407
BspPI GGATC 1 cut(s) 1118
BspTNI GGTCTC 1 cut(s) 147
BsrDI GCAATG 1 cut(s) 43
BssECI CCNNGG 2 cut(s) 157, 1201
BssMI GATC 2 cut(s) 1114, 1123
BssT1I CCWWGG 2 cut(s) 157, 1201
Bst2UI CCWGG 2 cut(s) 98, 555
Bst4CI ACNGT 2 cut(s) 139, 884
Bst6I CTCTTC 4 cut(s) 379, 402, 468, 1227
BstAPI GCANNNNNTGC 1 cut(s) 1394
BstC8I GCNNGC 2 cut(s) 690, 951
BstDEI CTNAG 3 cut(s) 48, 832, 1432
BstF5I GGATG 5 cut(s) 65, 614, 939, 1174, 1363
BstKTI GATC 2 cut(s) 1117, 1126
BstMAI GTCTC 4 cut(s) 147, 661, 780, 1375
BstMBI GATC 2 cut(s) 1114, 1123
BstMWI GCNNNNNNNGC 1 cut(s) 1394
BstNI CCWGG 2 cut(s) 98, 555
BstNSI RCATGY 2 cut(s) 692, 1048
BstSCI CCNGG 3 cut(s) 96, 440, 553
BstSFI CTRYAG 2 cut(s) 580, 965
BstSLI GKGCMC 1 cut(s) 17
BstV1I GCAGC 4 cut(s) 594, 709, 910, 992
BstX2I RGATCY 1 cut(s) 1123
BstYI RGATCY 1 cut(s) 1123
Bsu15I ATCGAT 2 cut(s) 21, 1110
BsuRI GGCC 1 cut(s) 668
BsuTUI ATCGAT 2 cut(s) 21, 1110
BtrI CACGTC 1 cut(s) 960
BtsCI GGATG 5 cut(s) 65, 614, 939, 1174, 1363
BtsI GCAGTG 1 cut(s) 1206
BtsIMutI CAGTG 2 cut(s) 861, 1206
BveI ACCTGC 1 cut(s) 1407
Cac8I GCNNGC 2 cut(s) 690, 951
CaiI CAGNNNCTG 1 cut(s) 602
Cfr13I GGNCC 2 cut(s) 214, 667
ClaI ATCGAT 2 cut(s) 21, 1110
CsiI ACCWGGT 1 cut(s) 96
Csp6I GTAC 2 cut(s) 88, 445
CspCI CAANNNNNGTGG 2 cut(s) 837, 872
CviAII CATG 6 cut(s) 71, 128, 549, 689, 840, 1045
CviQI GTAC 2 cut(s) 88, 445
DdeI CTNAG 3 cut(s) 48, 832, 1432
DpnI GATC 2 cut(s) 1116, 1125
DpnII GATC 2 cut(s) 1114, 1123
DraI TTTAAA 1 cut(s) 750
Eam1104I CTCTTC 4 cut(s) 379, 402, 468, 1227
EarI CTCTTC 4 cut(s) 379, 402, 468, 1227
Ecl136II GAGCTC 1 cut(s) 31
Eco130I CCWWGG 2 cut(s) 157, 1201
Eco24I GRGCYC 1 cut(s) 33
Eco31I GGTCTC 1 cut(s) 147
Eco47I GGWCC 1 cut(s) 214
Eco53kI GAGCTC 1 cut(s) 31
Eco57I CTGAAG 2 cut(s) 801, 1208
EcoICRI GAGCTC 1 cut(s) 31
EcoO109I RGGNCCY 1 cut(s) 667
EcoRI GAATTC 1 cut(s) 610
EcoRII CCWGG 2 cut(s) 96, 553
EcoT14I CCWWGG 2 cut(s) 157, 1201
EcoT38I GRGCYC 1 cut(s) 33
ErhI CCWWGG 2 cut(s) 157, 1201
FaeI CATG 6 cut(s) 74, 131, 552, 692, 843, 1048
FalI AAGNNNNNCTT 2 cut(s) 1377, 1409
FaqI GGGAC 3 cut(s) 873, 893, 1236
FatI CATG 6 cut(s) 70, 127, 548, 688, 839, 1044
Fnu4HI GCNGC 4 cut(s) 583, 723, 924, 981
FokI GGATG 5 cut(s) 52, 601, 946, 1181, 1370
FriOI GRGCYC 1 cut(s) 33
Fsp4HI GCNGC 4 cut(s) 583, 723, 924, 981
FspBI CTAG 3 cut(s) 660, 798, 1064
GluI GCNGC 4 cut(s) 583, 723, 924, 981
HaeIII GGCC 1 cut(s) 668
HapII CCGG 2 cut(s) 442, 519
Hin1II CATG 6 cut(s) 74, 131, 552, 692, 843, 1048
HindIII AAGCTT 1 cut(s) 570
HinfI GANTC 6 cut(s) 179, 599, 650, 811, 908, 1237
HpaII CCGG 2 cut(s) 442, 519
HphI GGTGA 2 cut(s) 509, 1190
Hpy166II GTNNAC 3 cut(s) 172, 500, 1004
Hpy188I TCNGA 9 cut(s) 49, 184, 363, 379, 604, 649, 781, 916, 1227
Hpy188III TCNNGA 3 cut(s) 332, 1064, 1121
Hpy8I GTNNAC 3 cut(s) 172, 500, 1004
HpyAV CCTTC 5 cut(s) 185, 448, 721, 776, 864
HpyCH4III ACNGT 2 cut(s) 139, 884
HpyCH4IV ACGT 2 cut(s) 424, 959
HpyF10VI GCNNNNNNNGC 1 cut(s) 1394
HpyF3I CTNAG 3 cut(s) 48, 832, 1432
HpySE526I ACGT 2 cut(s) 424, 959
Hsp92II CATG 6 cut(s) 74, 131, 552, 692, 843, 1048
Kzo9I GATC 2 cut(s) 1114, 1123
LmnI GCTCC 1 cut(s) 975
Lsp1109I GCAGC 4 cut(s) 594, 709, 910, 992
LweI GCATC 8 cut(s) 13, 141, 522, 924, 1088, 1159, 1403, 1418
MabI ACCWGGT 1 cut(s) 96
MaeI CTAG 3 cut(s) 660, 798, 1064
MaeII ACGT 2 cut(s) 424, 959
MaeIII GTNAC 3 cut(s) 769, 960, 1339
MalI GATC 2 cut(s) 1116, 1125
MboI GATC 2 cut(s) 1114, 1123
MfeI CAATTG 2 cut(s) 352, 897
MflI RGATCY 1 cut(s) 1123
MhlI GDGCHC 2 cut(s) 17, 33
MluCI AATT 9 cut(s) 352, 506, 610, 751, 897, 1023, 1038, 1305, 1320
MlyI GAGTC 3 cut(s) 173, 608, 820
MseI TTAA 3 cut(s) 57, 105, 749
MslI CAYNNNNRTG 1 cut(s) 693
MspI CCGG 2 cut(s) 442, 519
MspR9I CCNGG 3 cut(s) 98, 442, 555
MunI CAATTG 2 cut(s) 352, 897
Mva1269I GAATGC 3 cut(s) 238, 953, 1265
MvaI CCWGG 2 cut(s) 98, 555
MwoI GCNNNNNNNGC 1 cut(s) 1394
NciI CCSGG 1 cut(s) 442
NdeII GATC 2 cut(s) 1114, 1123
NlaIII CATG 6 cut(s) 74, 131, 552, 692, 843, 1048
NlaIV GGNNCC 2 cut(s) 430, 459
NmeAIII GCCGAG 1 cut(s) 12
NmuCI GTSAC 1 cut(s) 960
NspI RCATGY 2 cut(s) 692, 1048
PaeI GCATGC 1 cut(s) 692
PaqCI CACCTGC 1 cut(s) 1407
PctI GAATGC 3 cut(s) 238, 953, 1265
PfeI GAWTC 3 cut(s) 650, 908, 1237
PflFI GACNNNGTC 1 cut(s) 123
PflMI CCANNNNNTGG 1 cut(s) 554
PkrI GCNGC 4 cut(s) 584, 724, 925, 982
PleI GAGTC 3 cut(s) 173, 607, 819
PpsI GAGTC 3 cut(s) 173, 607, 819
Psp124BI GAGCTC 1 cut(s) 33
Psp6I CCWGG 2 cut(s) 96, 553
PspGI CCWGG 2 cut(s) 96, 553
PspN4I GGNNCC 2 cut(s) 430, 459
PspPI GGNCC 2 cut(s) 214, 667
PstI CTGCAG 1 cut(s) 584
PstNI CAGNNNCTG 1 cut(s) 602
PsuI RGATCY 1 cut(s) 1123
PsyI GACNNNGTC 1 cut(s) 123
RsaI GTAC 2 cut(s) 89, 446
RsaNI GTAC 2 cut(s) 88, 445
RseI CAYNNNNRTG 1 cut(s) 693
SacI GAGCTC 1 cut(s) 33
SaqAI TTAA 3 cut(s) 57, 105, 749
SatI GCNGC 4 cut(s) 583, 723, 924, 981
Sau3AI GATC 2 cut(s) 1114, 1123
Sau96I GGNCC 2 cut(s) 214, 667
ScaI AGTACT 1 cut(s) 89
SchI GAGTC 3 cut(s) 173, 608, 820
ScrFI CCNGG 3 cut(s) 98, 442, 555
SduI GDGCHC 2 cut(s) 17, 33
SexAI ACCWGGT 1 cut(s) 96
SfaNI GCATC 8 cut(s) 13, 141, 522, 924, 1088, 1159, 1403, 1418
SfcI CTRYAG 2 cut(s) 580, 965
SinI GGWCC 1 cut(s) 214
SmiMI CAYNNNNRTG 1 cut(s) 693
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
SphI GCATGC 1 cut(s) 692
Sse9I AATT 9 cut(s) 352, 506, 610, 751, 897, 1023, 1038, 1305, 1320
SspI AATATT 1 cut(s) 1011
SspMI CTAG 3 cut(s) 660, 798, 1064
SstI GAGCTC 1 cut(s) 33
StyD4I CCNGG 3 cut(s) 96, 440, 553
StyI CCWWGG 2 cut(s) 157, 1201
TaaI ACNGT 2 cut(s) 139, 884
TaiI ACGT 2 cut(s) 427, 962
TaqI TCGA 7 cut(s) 21, 530, 906, 1050, 1089, 1110, 1374
TaqII GACCGA 1 cut(s) 765
TasI AATT 9 cut(s) 352, 506, 610, 751, 897, 1023, 1038, 1305, 1320
TatI WGTACW 1 cut(s) 87
TfiI GAWTC 3 cut(s) 650, 908, 1237
Tru1I TTAA 3 cut(s) 57, 105, 749
Tru9I TTAA 3 cut(s) 57, 105, 749
TscAI CASTG 2 cut(s) 861, 1213
TseFI GTSAC 1 cut(s) 960
TseI GCWGC 4 cut(s) 582, 722, 923, 980
Tsp45I GTSAC 1 cut(s) 960
TspDTI ATGAA 8 cut(s) 54, 87, 399, 506, 603, 711, 933, 1250
TspGWI ACGGA 2 cut(s) 165, 272
TspRI CASTG 2 cut(s) 861, 1213
Tth111I GACNNNGTC 1 cut(s) 123
Van91I CCANNNNNTGG 1 cut(s) 554
VpaK11BI GGWCC 1 cut(s) 214
XapI RAATTY 2 cut(s) 610, 1023
XbaI TCTAGA 1 cut(s) 1063
XceI RCATGY 2 cut(s) 692, 1048
XspI CTAG 3 cut(s) 660, 798, 1064
ZrmI AGTACT 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.