Rh2DG568800

Histone-lysine N-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0005855
Physical Location & Seq
Reverse (-)
79814185 .. 79817441
3257 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG568800.1

Sequence Viewer

Length: 1314 bp
ATGGAGAGCGAGTGCCCAATCGATGCAGAGCTCGGCAATGAAATCTCTGAGCTTCTTAAACCTCCATCCGCTGCAAAAGTAGAGGAGTACTTGAACCAGGTCATTAAAACCAGCACCAGACAATGTCATGGCATCACAGTCAAACACAACGGAGACCTTGGCAAAGGTGTTTACGCTGACTCGGACTTGGAAGGAGATGAGCTTCTCCTCAAGGACCAAATGCTTGCGGGTCTTCAGCATTCTTCTAACAAGATTGAGTGTTTAGTGTGTAGCTTCTGTTTCCGTTTTGTTGGCTCTGTTGAGCTTCAAATAGGGAGGAGGCTTTATCTTCAAGAAATGGGAGTTTCTGCCAATTGTTGTCAGACTGATTACTCTTCTGATGATGAAGAAGAAGAAGAGGAAGAGATGGGGCAACGTGGTTCCAGCAGTTCCGGGTACAAAGGGAAGGTTCCTCTTCCTAAAGGGATTGCACACTCTTTGATGAATGGTGAACTCAAATTGCCCTACTCCGATAAGTTTTCGATGCCTCCTGCTGTTCCATGTCCTGGTGGCTGTGGAGAAGCTTATTACTGCAGCAAACTATGTGCAGAGTCTGATTGGAATTCATCCCATTCCTTACTTTGCACGGGGGAGAAGTCAGAATCAGTCTCTAGGGAGGCCCTTGTGAAGTTTATACAGCATGCCAATGAAACCAATGATATATTCCTCCTTGCTGCGAAGGTAGTGGCTTCCACCATTTTAAATTATAAGAAGTTGAAAGTAACTCAGTCTGAAGGAGACAATAAGCCTAGCGTTTCAGGGAGTCCATATCTATCCCTACTCTTAGAAGCATGGAAGCCAATATCAGTGGGACACAAGAGAAGGTGGTGGGACTGCGTTGCGTTGCCAATTGATGTCGAATCTTCTGATGAAGCTGCATTTAGGATGCAAATAAGAGAGCTGGCATTCACGTCACTACAGCTCCTAAAAGCAGCCATCTTTGATGAGGAATGTAAACCAATATTCTCCCTTGAAATTTACGGACATATAATTGGCATGTTCGAGTTGAATAATCTAGATTTGGTTGTAGCATCTCCTGTCGAAGATTATTTTTTATACATCGATGATCTTCCAGATCCTATAAAGAAAGAAGTTGAGGAGATTACACGACCATTTTTGGATGCTCTTGGTGATGACTATTCAGTTTGTTGCCAAGGCACTGCATTTTATCCTCTTCAGAGTTGTATGAATCATTCTTGTAGTCCCAATGCCAAAGCATTCAAAAGAGAGGAGGTATATAAAGTTCAAGTGGTATTTGCTGGATCTGTAGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SET zf-MYND

Protein Analysis

437

Amino Acids

48.41

Weight (kDa)

4.8

Isoelectric Point (pI)

52.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-MYND PF01753 180 - 208 7.6e-06 MYND finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 747
AccB7I CCANNNNNTGG 1 cut(s) 545
AciI CCGC 2 cut(s) 69, 227
AclWI GGATC 2 cut(s) 1109, 1309
AcsI RAATTY 2 cut(s) 601, 1014
AcuI CTGAAG 3 cut(s) 218, 792, 1199
AfaI GTAC 2 cut(s) 89, 437
AfiI CCNNNNNNNGG 1 cut(s) 545
AgsI TTSAA 8 cut(s) 94, 308, 332, 757, 1013, 1048, 1261, 1286
AjiI CACGTC 1 cut(s) 951
AjnI CCWGG 2 cut(s) 96, 544
AjuI GAANNNNNNNTTGG 2 cut(s) 686, 718
AluBI AGCT 9 cut(s) 31, 52, 202, 273, 304, 563, 914, 940, 961
AluI AGCT 9 cut(s) 31, 52, 202, 273, 304, 563, 914, 940, 961
Alw21I GWGCWC 1 cut(s) 33
Alw26I GTCTC 3 cut(s) 147, 652, 771
AlwI GGATC 2 cut(s) 1109, 1309
AlwNI CAGNNNCTG 1 cut(s) 593
AoxI GGCC 1 cut(s) 657
ApeKI GCWGC 5 cut(s) 71, 573, 713, 914, 971
ApoI RAATTY 2 cut(s) 601, 1014
AspS9I GGNCC 2 cut(s) 214, 658
AsuC2I CCSGG 1 cut(s) 433
AsuHPI GGTGA 2 cut(s) 500, 1181
AvaII GGWCC 1 cut(s) 214
BaeGI GKGCMC 1 cut(s) 17
BanII GRGCYC 1 cut(s) 33
BbsI GAAGAC 1 cut(s) 224
Bbv12I GWGCWC 1 cut(s) 33
BbvI GCAGC 5 cut(s) 58, 585, 700, 901, 983
BccI CCATC 3 cut(s) 73, 400, 983
BciT130I CCWGG 2 cut(s) 98, 546
BcnI CCSGG 1 cut(s) 433
BcoDI GTCTC 3 cut(s) 147, 652, 771
BfaI CTAG 4 cut(s) 651, 789, 1055, 1312
BfmI CTRYAG 3 cut(s) 571, 956, 1305
BisI GCNGC 5 cut(s) 72, 574, 714, 915, 972
BlsI GCNGC 5 cut(s) 73, 575, 715, 916, 973
BmcAI AGTACT 1 cut(s) 89
Bme1390I CCNGG 3 cut(s) 98, 433, 546
Bme18I GGWCC 1 cut(s) 214
BmgBI CACGTC 1 cut(s) 951
BmgT120I GGNCC 2 cut(s) 214, 658
BmiI GGNNCC 2 cut(s) 421, 450
BmrFI CCNGG 3 cut(s) 98, 433, 546
BmsI GCATC 6 cut(s) 13, 141, 513, 915, 1079, 1150
BpiI GAAGAC 1 cut(s) 224
BpuEI CTTGAG 1 cut(s) 194
BpuMI CCSGG 1 cut(s) 433
Bsa29I ATCGAT 2 cut(s) 21, 1101
BsaI GGTCTC 1 cut(s) 147
BsaJI CCNNGG 2 cut(s) 157, 1192
BsaXI ACNNNNNCTCC 3 cut(s) 26, 945, 975
Bsc4I CCNNNNNNNGG 1 cut(s) 545
Bse3DI GCAATG 1 cut(s) 43
BseBI CCWGG 2 cut(s) 98, 546
BseCI ATCGAT 2 cut(s) 21, 1101
BseDI CCNNGG 2 cut(s) 157, 1192
BseGI GGATG 4 cut(s) 65, 605, 930, 1165
BseLI CCNNNNNNNGG 1 cut(s) 545
BseMI GCAATG 1 cut(s) 43
BseMII CTCAG 2 cut(s) 39, 779
BseRI GAGGAG 5 cut(s) 98, 197, 331, 1151, 1283
BseSI GKGCMC 1 cut(s) 17
BseXI GCAGC 5 cut(s) 58, 585, 700, 901, 983
BsgI GTGCAG 1 cut(s) 606
BshFI GGCC 1 cut(s) 659
BshVI ATCGAT 2 cut(s) 21, 1101
BsiHKAI GWGCWC 1 cut(s) 33
BsiSI CCGG 1 cut(s) 432
BslFI GGGAC 3 cut(s) 864, 884, 1227
BslI CCNNNNNNNGG 1 cut(s) 545
BsmAI GTCTC 3 cut(s) 147, 652, 771
BsmFI GGGAC 3 cut(s) 864, 884, 1227
BsmI GAATGC 3 cut(s) 238, 944, 1256
BsnI GGCC 1 cut(s) 659
Bso31I GGTCTC 1 cut(s) 147
Bsp1286I GDGCHC 2 cut(s) 17, 33
Bsp143I GATC 3 cut(s) 1105, 1114, 1301
BspACI CCGC 2 cut(s) 69, 227
BspANI GGCC 1 cut(s) 659
BspCNI CTCAG 2 cut(s) 40, 778
BspDI ATCGAT 2 cut(s) 21, 1101
BspLI GGNNCC 2 cut(s) 421, 450
BspMAI CTGCAG 1 cut(s) 575
BspPI GGATC 2 cut(s) 1109, 1309
BspTNI GGTCTC 1 cut(s) 147
BsrDI GCAATG 1 cut(s) 43
BssECI CCNNGG 2 cut(s) 157, 1192
BssMI GATC 3 cut(s) 1105, 1114, 1301
BssT1I CCWWGG 2 cut(s) 157, 1192
Bst2UI CCWGG 2 cut(s) 98, 546
Bst4CI ACNGT 1 cut(s) 139
Bst6I CTCTTC 5 cut(s) 379, 390, 396, 459, 1218
BstC8I GCNNGC 3 cut(s) 225, 681, 942
BstDEI CTNAG 3 cut(s) 48, 765, 823
BstF5I GGATG 4 cut(s) 65, 605, 930, 1165
BstKTI GATC 3 cut(s) 1108, 1117, 1304
BstMAI GTCTC 3 cut(s) 147, 652, 771
BstMBI GATC 3 cut(s) 1105, 1114, 1301
BstNI CCWGG 2 cut(s) 98, 546
BstNSI RCATGY 2 cut(s) 683, 1039
BstSCI CCNGG 3 cut(s) 96, 431, 544
BstSFI CTRYAG 3 cut(s) 571, 956, 1305
BstSLI GKGCMC 1 cut(s) 17
BstV1I GCAGC 5 cut(s) 58, 585, 700, 901, 983
BstV2I GAAGAC 1 cut(s) 224
BstX2I RGATCY 2 cut(s) 1114, 1301
BstYI RGATCY 2 cut(s) 1114, 1301
Bsu15I ATCGAT 2 cut(s) 21, 1101
BsuRI GGCC 1 cut(s) 659
BsuTUI ATCGAT 2 cut(s) 21, 1101
BtrI CACGTC 1 cut(s) 951
BtsCI GGATG 4 cut(s) 65, 605, 930, 1165
BtsI GCAGTG 1 cut(s) 1197
BtsIMutI CAGTG 2 cut(s) 852, 1197
Cac8I GCNNGC 3 cut(s) 225, 681, 942
CaiI CAGNNNCTG 1 cut(s) 593
Cfr13I GGNCC 2 cut(s) 214, 658
ClaI ATCGAT 2 cut(s) 21, 1101
CsiI ACCWGGT 1 cut(s) 96
Csp6I GTAC 2 cut(s) 88, 436
CspCI CAANNNNNGTGG 2 cut(s) 828, 863
CviAII CATG 5 cut(s) 128, 540, 680, 831, 1036
CviQI GTAC 2 cut(s) 88, 436
DdeI CTNAG 3 cut(s) 48, 765, 823
DpnI GATC 3 cut(s) 1107, 1116, 1303
DpnII GATC 3 cut(s) 1105, 1114, 1301
DraI TTTAAA 1 cut(s) 741
Eam1104I CTCTTC 5 cut(s) 379, 390, 396, 459, 1218
EarI CTCTTC 5 cut(s) 379, 390, 396, 459, 1218
Ecl136II GAGCTC 1 cut(s) 31
Eco130I CCWWGG 2 cut(s) 157, 1192
Eco24I GRGCYC 1 cut(s) 33
Eco31I GGTCTC 1 cut(s) 147
Eco47I GGWCC 1 cut(s) 214
Eco53kI GAGCTC 1 cut(s) 31
Eco57I CTGAAG 3 cut(s) 218, 792, 1199
EcoICRI GAGCTC 1 cut(s) 31
EcoO109I RGGNCCY 1 cut(s) 658
EcoRI GAATTC 1 cut(s) 601
EcoRII CCWGG 2 cut(s) 96, 544
EcoT14I CCWWGG 2 cut(s) 157, 1192
EcoT38I GRGCYC 1 cut(s) 33
ErhI CCWWGG 2 cut(s) 157, 1192
FaeI CATG 5 cut(s) 131, 543, 683, 834, 1039
FaqI GGGAC 3 cut(s) 864, 884, 1227
FatI CATG 5 cut(s) 127, 539, 679, 830, 1035
FauI CCCGC 1 cut(s) 220
Fnu4HI GCNGC 5 cut(s) 72, 574, 714, 915, 972
FokI GGATG 4 cut(s) 52, 592, 937, 1172
FriOI GRGCYC 1 cut(s) 33
Fsp4HI GCNGC 5 cut(s) 72, 574, 714, 915, 972
FspBI CTAG 4 cut(s) 651, 789, 1055, 1312
GluI GCNGC 5 cut(s) 72, 574, 714, 915, 972
HaeIII GGCC 1 cut(s) 659
HapII CCGG 1 cut(s) 432
Hin1II CATG 5 cut(s) 131, 543, 683, 834, 1039
HindIII AAGCTT 1 cut(s) 561
HinfI GANTC 6 cut(s) 179, 590, 641, 802, 899, 1228
HpaII CCGG 1 cut(s) 432
HphI GGTGA 2 cut(s) 500, 1181
Hpy166II GTNNAC 3 cut(s) 172, 491, 995
Hpy188III TCNNGA 3 cut(s) 332, 1055, 1112
Hpy8I GTNNAC 3 cut(s) 172, 491, 995
HpyAV CCTTC 5 cut(s) 185, 439, 712, 767, 855
HpyCH4III ACNGT 1 cut(s) 139
HpyCH4IV ACGT 2 cut(s) 415, 950
HpyCH4V TGCA 9 cut(s) 26, 74, 470, 573, 587, 624, 917, 928, 1202
HpyF3I CTNAG 3 cut(s) 48, 765, 823
HpySE526I ACGT 2 cut(s) 415, 950
Hsp92II CATG 5 cut(s) 131, 543, 683, 834, 1039
Kzo9I GATC 3 cut(s) 1105, 1114, 1301
LmnI GCTCC 1 cut(s) 966
Lsp1109I GCAGC 5 cut(s) 58, 585, 700, 901, 983
LweI GCATC 6 cut(s) 13, 141, 513, 915, 1079, 1150
MabI ACCWGGT 1 cut(s) 96
MaeI CTAG 4 cut(s) 651, 789, 1055, 1312
MaeII ACGT 2 cut(s) 415, 950
MaeIII GTNAC 2 cut(s) 760, 951
MalI GATC 3 cut(s) 1107, 1116, 1303
MboI GATC 3 cut(s) 1105, 1114, 1301
MfeI CAATTG 2 cut(s) 352, 888
MflI RGATCY 2 cut(s) 1114, 1301
MhlI GDGCHC 2 cut(s) 17, 33
MluCI AATT 7 cut(s) 352, 497, 601, 742, 888, 1014, 1029
MlyI GAGTC 3 cut(s) 173, 599, 811
MseI TTAA 3 cut(s) 57, 105, 740
MslI CAYNNNNRTG 1 cut(s) 684
MspA1I CMGCKG 1 cut(s) 71
MspI CCGG 1 cut(s) 432
MspR9I CCNGG 3 cut(s) 98, 433, 546
MunI CAATTG 2 cut(s) 352, 888
Mva1269I GAATGC 3 cut(s) 238, 944, 1256
MvaI CCWGG 2 cut(s) 98, 546
NciI CCSGG 1 cut(s) 433
NdeII GATC 3 cut(s) 1105, 1114, 1301
NlaIII CATG 5 cut(s) 131, 543, 683, 834, 1039
NlaIV GGNNCC 2 cut(s) 421, 450
NmeAIII GCCGAG 1 cut(s) 12
NmuCI GTSAC 1 cut(s) 951
NspI RCATGY 2 cut(s) 683, 1039
PaeI GCATGC 1 cut(s) 683
PctI GAATGC 3 cut(s) 238, 944, 1256
PfeI GAWTC 3 cut(s) 641, 899, 1228
PflFI GACNNNGTC 1 cut(s) 123
PflMI CCANNNNNTGG 1 cut(s) 545
PkrI GCNGC 5 cut(s) 73, 575, 715, 916, 973
PleI GAGTC 3 cut(s) 173, 598, 810
PpsI GAGTC 3 cut(s) 173, 598, 810
PsiI TTATAA 1 cut(s) 747
Psp124BI GAGCTC 1 cut(s) 33
Psp6I CCWGG 2 cut(s) 96, 544
PspGI CCWGG 2 cut(s) 96, 544
PspN4I GGNNCC 2 cut(s) 421, 450
PspPI GGNCC 2 cut(s) 214, 658
PsrI GAACNNNNNNTAC 2 cut(s) 1266, 1298
PstI CTGCAG 1 cut(s) 575
PstNI CAGNNNCTG 1 cut(s) 593
PsuI RGATCY 2 cut(s) 1114, 1301
PsyI GACNNNGTC 1 cut(s) 123
RsaI GTAC 2 cut(s) 89, 437
RsaNI GTAC 2 cut(s) 88, 436
RseI CAYNNNNRTG 1 cut(s) 684
SacI GAGCTC 1 cut(s) 33
SaqAI TTAA 3 cut(s) 57, 105, 740
SatI GCNGC 5 cut(s) 72, 574, 714, 915, 972
Sau3AI GATC 3 cut(s) 1105, 1114, 1301
Sau96I GGNCC 2 cut(s) 214, 658
ScaI AGTACT 1 cut(s) 89
SchI GAGTC 3 cut(s) 173, 599, 811
ScrFI CCNGG 3 cut(s) 98, 433, 546
SduI GDGCHC 2 cut(s) 17, 33
SexAI ACCWGGT 1 cut(s) 96
SfaNI GCATC 6 cut(s) 13, 141, 513, 915, 1079, 1150
SfcI CTRYAG 3 cut(s) 571, 956, 1305
SinI GGWCC 1 cut(s) 214
SmiMI CAYNNNNRTG 1 cut(s) 684
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
SphI GCATGC 1 cut(s) 683
Sse9I AATT 7 cut(s) 352, 497, 601, 742, 888, 1014, 1029
SsiI CCGC 2 cut(s) 69, 227
SspI AATATT 1 cut(s) 1002
SspMI CTAG 4 cut(s) 651, 789, 1055, 1312
SstI GAGCTC 1 cut(s) 33
StyD4I CCNGG 3 cut(s) 96, 431, 544
StyI CCWWGG 2 cut(s) 157, 1192
TaaI ACNGT 1 cut(s) 139
TaiI ACGT 2 cut(s) 418, 953
TaqI TCGA 6 cut(s) 21, 521, 897, 1041, 1080, 1101
TasI AATT 7 cut(s) 352, 497, 601, 742, 888, 1014, 1029
TatI WGTACW 1 cut(s) 87
TfiI GAWTC 3 cut(s) 641, 899, 1228
Tru1I TTAA 3 cut(s) 57, 105, 740
Tru9I TTAA 3 cut(s) 57, 105, 740
TscAI CASTG 2 cut(s) 852, 1204
TseFI GTSAC 1 cut(s) 951
TseI GCWGC 5 cut(s) 71, 573, 713, 914, 971
Tsp45I GTSAC 1 cut(s) 951
TspDTI ATGAA 7 cut(s) 54, 399, 497, 594, 702, 924, 1241
TspGWI ACGGA 3 cut(s) 165, 272, 1035
TspRI CASTG 2 cut(s) 852, 1204
Tth111I GACNNNGTC 1 cut(s) 123
Van91I CCANNNNNTGG 1 cut(s) 545
VpaK11BI GGWCC 1 cut(s) 214
XapI RAATTY 2 cut(s) 601, 1014
XbaI TCTAGA 1 cut(s) 1054
XceI RCATGY 2 cut(s) 683, 1039
XspI CTAG 4 cut(s) 651, 789, 1055, 1312
ZrmI AGTACT 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.