Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0005855

Physical Location & Seq

Genomic Coordinates Reverse (-)

70559260 .. 70562518

Gene Structure 3259 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG530100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1437 bp

ATGGAGAGCGAGTGCCCAATCGATGCAGAGCTCGGCAATGAAATCTCTGAGCTTCTTAAACCTCCATCCCCTACAAAAGTAGAGGAGTACTTGAACCGGCTCATTAAAACCAGCACCAGACAATGTCATGGCATCACAGTCAAACACAACGGAGACCTTGGCAAAGGTGTTTACGCTGACTCGGACTTGGAAGGAGATGAGCTTCTCCTCAAGGACCAAATGCTTGTGGGTCTTCAGCATTCTTCTAACAAGATTGAGTGTTTAGTGTGTAGCTTCTGTTTCCGTTTTGTTGGCTCTGTTGAGCTTCAAATAGGGAGGAGGCTTTATCTTCAAGAAATGGGAGTTTCTGCCAATTGTTGTCAGACTGATTACTCTTCTGATGAAGAAGAAGAAGAGGAGGAGATGGGGCAACGTGGTTCCAGCAGTTCCGGGTACAAAGGGAAGGTTCCTCTTCCTAAAGGGATTGCACACTCTTTGATGAATGGTGAACTCAAATTGCCCTACTCTGATAAGTTTTCGATGCCTCCTGCTGTTCCATGTCCTGGTGGCTGTGGAGAAGCTTATTACTGCAGCAAACTGTGTGCAGAGTCTGATTGGAATTCATCCCATTCCTTACTTTGCACGGGGGAGAAGTCAGAATCAGTCTCTAGGGAGGCCCTTGTGAAGTTTATACAGCATGCCAATGAAACCAATGATATATTCCTCCTTGCTGCGAAGGTAGTGGCTTCCACCATTTTAAATTATAGGAAGTTGAAAGTAACTCAGTCTGAAGGAGACAATAAGCCTAGAGTTTCAGGGAGTCCATATCTATCCTTACTCTTAGAAGCATGGAAGCCAATATCAGTGGGACACAAGAGAAGGTGGTGGGACTGCGTTGCGTTGCCAATTGATGTCGAATCTTCTGATGATGCTGCATTTAGGATGCAAATCAGAGAGCTGGCATTCACGTCACTACAGCTCCTAAAAGCAGCCATCTTTGATGAGGAATGTAAACCAATATTCTCCCTTGAAATTTATGGACATATAATTGGCATGTTCGAGTTGAATAATCTAGATTTGGTTGTAGCATCTCCTGTGGAAGATTATTTTTTATACATCGATGATCTTCCAGATCCTATAAAGAAAGAAGTTGAGGAGATTACACGACCATTTTTGGATGCTCTTGGTGATGACTATTCAGTTTGTTGCCAAGGCACTGCATTTTATCCTCTTCAGAGTTGTATGAATCATTCTTGTAGTCCCAATGCCAAAGCATTCAAAAGAGAGGAGGACAGAGATGGTCAAGCAACAATAATTGCACTAAAACCAATTTTCAAGGGAGAGGAGGTTACTATTTCTTATGTGGATGAGGACATTCCTTTCAAGGAGAGACAAGCATTACTTGCAGATTATGGTTTTAGATGCAGGTGTCCAAGATGCTTAGAAGAAGAACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SET zf-MYND

Protein Analysis

478

Amino Acids

53.45

Weight (kDa)

4.82

Isoelectric Point (pI)

51.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-MYND	PF01753	179 - 207	8.5e-06	MYND finger
SET	PF00856	373 - 447	4.7e-11	SET domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005855)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21820
fragaria_vesca	FvH4_6g43540 FvH4_6g43540 FvH4_6g43540 FvH4_6g43540 FvH4_6g43540 FvH4_6g43540 FvH4_6g43540 FvH4_6g43540
malus_domestica	MD09G1105100.v1.1
prunus_persica	Prupe.3G220400_v2.0.a1
pyrus_communis	pycom09g02820
rosa_chinensis	RchiOBHm_Chr2g0160071
rosa_laevigata	RLG00000021195
rosa_multiflora	Rmu_sc0002023.1_g000014
rosa_roxburghii	Rroxscaffold_2G00090050
rosa_rugosa	Rorug02G0480300 Rorug02G0480400 Rorug02G0480400 Rorug02G0480500 Rorug02G0480600 Rorug02G0480700 Rorug02G0480800
rosa_samantha	Rh2AG546700 Rh2BG560100 Rh2CG530100 Rh2DG568800
rosa_wichuraiana	Rw2G045210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1395
Acc36I	ACCTGC	1 cut(s)	1395
AccB7I	CCANNNNNTGG	1 cut(s)	542
AclWI	GGATC	1 cut(s)	1106
AcsI	RAATTY	2 cut(s)	598, 1011
AcuI	CTGAAG	3 cut(s)	218, 789, 1196
AfaI	GTAC	2 cut(s)	89, 434
AfiI	CCNNNNNNNGG	1 cut(s)	542
AgsI	TTSAA	9 cut(s)	94, 308, 332, 754, 1010, 1045, 1258, 1315, 1363
AjiI	CACGTC	1 cut(s)	948
AjnI	CCWGG	1 cut(s)	541
AjuI	GAANNNNNNNTTGG	2 cut(s)	683, 715
AluBI	AGCT	8 cut(s)	31, 52, 202, 273, 304, 560, 937, 958
AluI	AGCT	8 cut(s)	31, 52, 202, 273, 304, 560, 937, 958
Alw21I	GWGCWC	1 cut(s)	33
Alw26I	GTCTC	4 cut(s)	147, 649, 768, 1363
AlwI	GGATC	1 cut(s)	1106
AlwNI	CAGNNNCTG	1 cut(s)	590
AoxI	GGCC	1 cut(s)	654
ApeKI	GCWGC	4 cut(s)	570, 710, 911, 968
ApoI	RAATTY	2 cut(s)	598, 1011
AspS9I	GGNCC	2 cut(s)	214, 655
AsuC2I	CCSGG	1 cut(s)	430
AsuHPI	GGTGA	2 cut(s)	497, 1178
AvaII	GGWCC	1 cut(s)	214
BaeGI	GKGCMC	1 cut(s)	17
BanII	GRGCYC	1 cut(s)	33
BbsI	GAAGAC	1 cut(s)	224
Bbv12I	GWGCWC	1 cut(s)	33
BbvI	GCAGC	4 cut(s)	582, 697, 898, 980
BccI	CCATC	4 cut(s)	73, 397, 980, 1271
BciT130I	CCWGG	1 cut(s)	543
BcnI	CCSGG	1 cut(s)	430
BcoDI	GTCTC	4 cut(s)	147, 649, 768, 1363
BfaI	CTAG	3 cut(s)	648, 786, 1052
BfmI	CTRYAG	2 cut(s)	568, 953
BfuAI	ACCTGC	1 cut(s)	1395
BisI	GCNGC	4 cut(s)	571, 711, 912, 969
BlsI	GCNGC	4 cut(s)	572, 712, 913, 970
BmcAI	AGTACT	1 cut(s)	89
Bme1390I	CCNGG	2 cut(s)	430, 543
Bme18I	GGWCC	1 cut(s)	214
BmgBI	CACGTC	1 cut(s)	948
BmgT120I	GGNCC	2 cut(s)	214, 655
BmiI	GGNNCC	2 cut(s)	418, 447
BmrFI	CCNGG	2 cut(s)	430, 543
BmsI	GCATC	9 cut(s)	13, 141, 510, 898, 912, 1076, 1147, 1391, 1406
BpiI	GAAGAC	1 cut(s)	224
BpuEI	CTTGAG	1 cut(s)	194
BpuMI	CCSGG	1 cut(s)	430
Bsa29I	ATCGAT	2 cut(s)	21, 1098
BsaBI	GATNNNNATC	1 cut(s)	926
BsaI	GGTCTC	1 cut(s)	147
BsaJI	CCNNGG	2 cut(s)	157, 1189
BsaXI	ACNNNNNCTCC	5 cut(s)	26, 942, 972, 1311, 1341
Bsc4I	CCNNNNNNNGG	1 cut(s)	542
Bse118I	RCCGGY	1 cut(s)	96
Bse3DI	GCAATG	1 cut(s)	43
Bse8I	GATNNNNATC	1 cut(s)	926
BseBI	CCWGG	1 cut(s)	543
BseCI	ATCGAT	2 cut(s)	21, 1098
BseDI	CCNNGG	2 cut(s)	157, 1189
BseGI	GGATG	5 cut(s)	65, 602, 927, 1162, 1351
BseJI	GATNNNNATC	1 cut(s)	926
BseLI	CCNNNNNNNGG	1 cut(s)	542
BseMI	GCAATG	1 cut(s)	43
BseMII	CTCAG	2 cut(s)	39, 776
BseRI	GAGGAG	8 cut(s)	98, 197, 331, 410, 413, 1148, 1280, 1337
BseSI	GKGCMC	1 cut(s)	17
BseXI	GCAGC	4 cut(s)	582, 697, 898, 980
BsgI	GTGCAG	1 cut(s)	603
BshFI	GGCC	1 cut(s)	656
BshVI	ATCGAT	2 cut(s)	21, 1098
BsiHKAI	GWGCWC	1 cut(s)	33
BsiSI	CCGG	2 cut(s)	97, 429
BslFI	GGGAC	3 cut(s)	861, 881, 1224
BslI	CCNNNNNNNGG	1 cut(s)	542
BsmAI	GTCTC	4 cut(s)	147, 649, 768, 1363
BsmFI	GGGAC	3 cut(s)	861, 881, 1224
BsmI	GAATGC	3 cut(s)	238, 941, 1253
BsnI	GGCC	1 cut(s)	656
Bso31I	GGTCTC	1 cut(s)	147
Bsp1286I	GDGCHC	2 cut(s)	17, 33
Bsp143I	GATC	2 cut(s)	1102, 1111
BspANI	GGCC	1 cut(s)	656
BspCNI	CTCAG	2 cut(s)	40, 775
BspDI	ATCGAT	2 cut(s)	21, 1098
BspLI	GGNNCC	2 cut(s)	418, 447
BspMAI	CTGCAG	1 cut(s)	572
BspMI	ACCTGC	1 cut(s)	1395
BspPI	GGATC	1 cut(s)	1106
BspTNI	GGTCTC	1 cut(s)	147
BsrDI	GCAATG	1 cut(s)	43
BsrFI	RCCGGY	1 cut(s)	96
BssAI	RCCGGY	1 cut(s)	96
BssECI	CCNNGG	2 cut(s)	157, 1189
BssMI	GATC	2 cut(s)	1102, 1111
BssT1I	CCWWGG	2 cut(s)	157, 1189
Bst2UI	CCWGG	1 cut(s)	543
Bst4CI	ACNGT	2 cut(s)	139, 579
Bst6I	CTCTTC	4 cut(s)	379, 387, 456, 1215
BstAPI	GCANNNNNTGC	1 cut(s)	1382
BstC8I	GCNNGC	2 cut(s)	678, 939
BstDEI	CTNAG	4 cut(s)	48, 762, 820, 1420
BstF5I	GGATG	5 cut(s)	65, 602, 927, 1162, 1351
BstKTI	GATC	2 cut(s)	1105, 1114
BstMAI	GTCTC	4 cut(s)	147, 649, 768, 1363
BstMBI	GATC	2 cut(s)	1102, 1111
BstMWI	GCNNNNNNNGC	1 cut(s)	1382
BstNI	CCWGG	1 cut(s)	543
BstNSI	RCATGY	2 cut(s)	680, 1036
BstSCI	CCNGG	2 cut(s)	428, 541
BstSFI	CTRYAG	2 cut(s)	568, 953
BstSLI	GKGCMC	1 cut(s)	17
BstV1I	GCAGC	4 cut(s)	582, 697, 898, 980
BstV2I	GAAGAC	1 cut(s)	224
BstX2I	RGATCY	1 cut(s)	1111
BstYI	RGATCY	1 cut(s)	1111
Bsu15I	ATCGAT	2 cut(s)	21, 1098
BsuRI	GGCC	1 cut(s)	656
BsuTUI	ATCGAT	2 cut(s)	21, 1098
BtrI	CACGTC	1 cut(s)	948
BtsCI	GGATG	5 cut(s)	65, 602, 927, 1162, 1351
BtsI	GCAGTG	1 cut(s)	1194
BtsIMutI	CAGTG	2 cut(s)	849, 1194
BveI	ACCTGC	1 cut(s)	1395
Cac8I	GCNNGC	2 cut(s)	678, 939
CaiI	CAGNNNCTG	1 cut(s)	590
Cfr10I	RCCGGY	1 cut(s)	96
Cfr13I	GGNCC	2 cut(s)	214, 655
ClaI	ATCGAT	2 cut(s)	21, 1098
Csp6I	GTAC	2 cut(s)	88, 433
CspCI	CAANNNNNGTGG	2 cut(s)	825, 860
CviAII	CATG	5 cut(s)	128, 537, 677, 828, 1033
CviQI	GTAC	2 cut(s)	88, 433
DdeI	CTNAG	4 cut(s)	48, 762, 820, 1420
DpnI	GATC	2 cut(s)	1104, 1113
DpnII	GATC	2 cut(s)	1102, 1111
DraI	TTTAAA	1 cut(s)	738
Eam1104I	CTCTTC	4 cut(s)	379, 387, 456, 1215
EarI	CTCTTC	4 cut(s)	379, 387, 456, 1215
Ecl136II	GAGCTC	1 cut(s)	31
Eco130I	CCWWGG	2 cut(s)	157, 1189
Eco24I	GRGCYC	1 cut(s)	33
Eco31I	GGTCTC	1 cut(s)	147
Eco47I	GGWCC	1 cut(s)	214
Eco53kI	GAGCTC	1 cut(s)	31
Eco57I	CTGAAG	3 cut(s)	218, 789, 1196
EcoICRI	GAGCTC	1 cut(s)	31
EcoO109I	RGGNCCY	1 cut(s)	655
EcoRI	GAATTC	1 cut(s)	598
EcoRII	CCWGG	1 cut(s)	541
EcoT14I	CCWWGG	2 cut(s)	157, 1189
EcoT38I	GRGCYC	1 cut(s)	33
ErhI	CCWWGG	2 cut(s)	157, 1189
FaeI	CATG	5 cut(s)	131, 540, 680, 831, 1036
FalI	AAGNNNNNCTT	2 cut(s)	1365, 1397
FaqI	GGGAC	3 cut(s)	861, 881, 1224
FatI	CATG	5 cut(s)	127, 536, 676, 827, 1032
Fnu4HI	GCNGC	4 cut(s)	571, 711, 912, 969
FokI	GGATG	5 cut(s)	52, 589, 934, 1169, 1358
FriOI	GRGCYC	1 cut(s)	33
Fsp4HI	GCNGC	4 cut(s)	571, 711, 912, 969
FspBI	CTAG	3 cut(s)	648, 786, 1052
GluI	GCNGC	4 cut(s)	571, 711, 912, 969
HaeIII	GGCC	1 cut(s)	656
HapII	CCGG	2 cut(s)	97, 429
Hin1II	CATG	5 cut(s)	131, 540, 680, 831, 1036
HindIII	AAGCTT	1 cut(s)	558
HinfI	GANTC	6 cut(s)	179, 587, 638, 799, 896, 1225
HpaII	CCGG	2 cut(s)	97, 429
HphI	GGTGA	2 cut(s)	497, 1178
Hpy166II	GTNNAC	3 cut(s)	172, 488, 992
Hpy188III	TCNNGA	3 cut(s)	332, 1052, 1109
Hpy8I	GTNNAC	3 cut(s)	172, 488, 992
HpyAV	CCTTC	5 cut(s)	185, 436, 709, 764, 852
HpyCH4III	ACNGT	2 cut(s)	139, 579
HpyCH4IV	ACGT	2 cut(s)	412, 947
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1382
HpyF3I	CTNAG	4 cut(s)	48, 762, 820, 1420
HpySE526I	ACGT	2 cut(s)	412, 947
Hsp92II	CATG	5 cut(s)	131, 540, 680, 831, 1036
Kzo9I	GATC	2 cut(s)	1102, 1111
LmnI	GCTCC	1 cut(s)	963
Lsp1109I	GCAGC	4 cut(s)	582, 697, 898, 980
LweI	GCATC	9 cut(s)	13, 141, 510, 898, 912, 1076, 1147, 1391, 1406
MaeI	CTAG	3 cut(s)	648, 786, 1052
MaeII	ACGT	2 cut(s)	412, 947
MaeIII	GTNAC	3 cut(s)	757, 948, 1327
MalI	GATC	2 cut(s)	1104, 1113
MboI	GATC	2 cut(s)	1102, 1111
MfeI	CAATTG	2 cut(s)	352, 885
MflI	RGATCY	1 cut(s)	1111
MhlI	GDGCHC	2 cut(s)	17, 33
MluCI	AATT	9 cut(s)	352, 494, 598, 739, 885, 1011, 1026, 1293, 1308
MlyI	GAGTC	3 cut(s)	173, 596, 808
MseI	TTAA	3 cut(s)	57, 105, 737
MslI	CAYNNNNRTG	1 cut(s)	681
MspI	CCGG	2 cut(s)	97, 429
MspR9I	CCNGG	2 cut(s)	430, 543
MunI	CAATTG	2 cut(s)	352, 885
Mva1269I	GAATGC	3 cut(s)	238, 941, 1253
MvaI	CCWGG	1 cut(s)	543
MwoI	GCNNNNNNNGC	1 cut(s)	1382
NciI	CCSGG	1 cut(s)	430
NdeII	GATC	2 cut(s)	1102, 1111
NlaIII	CATG	5 cut(s)	131, 540, 680, 831, 1036
NlaIV	GGNNCC	2 cut(s)	418, 447
NmeAIII	GCCGAG	1 cut(s)	12
NmuCI	GTSAC	1 cut(s)	948
NspI	RCATGY	2 cut(s)	680, 1036
PaeI	GCATGC	1 cut(s)	680
PaqCI	CACCTGC	1 cut(s)	1395
PctI	GAATGC	3 cut(s)	238, 941, 1253
PfeI	GAWTC	3 cut(s)	638, 896, 1225
PflFI	GACNNNGTC	1 cut(s)	123
PflMI	CCANNNNNTGG	1 cut(s)	542
PkrI	GCNGC	4 cut(s)	572, 712, 913, 970
PleI	GAGTC	3 cut(s)	173, 595, 807
PpsI	GAGTC	3 cut(s)	173, 595, 807
Psp124BI	GAGCTC	1 cut(s)	33
Psp6I	CCWGG	1 cut(s)	541
PspGI	CCWGG	1 cut(s)	541
PspN4I	GGNNCC	2 cut(s)	418, 447
PspPI	GGNCC	2 cut(s)	214, 655
PstI	CTGCAG	1 cut(s)	572
PstNI	CAGNNNCTG	1 cut(s)	590
PsuI	RGATCY	1 cut(s)	1111
PsyI	GACNNNGTC	1 cut(s)	123
RsaI	GTAC	2 cut(s)	89, 434
RsaNI	GTAC	2 cut(s)	88, 433
RseI	CAYNNNNRTG	1 cut(s)	681
SacI	GAGCTC	1 cut(s)	33
SaqAI	TTAA	3 cut(s)	57, 105, 737
SatI	GCNGC	4 cut(s)	571, 711, 912, 969
Sau3AI	GATC	2 cut(s)	1102, 1111
Sau96I	GGNCC	2 cut(s)	214, 655
ScaI	AGTACT	1 cut(s)	89
SchI	GAGTC	3 cut(s)	173, 596, 808
ScrFI	CCNGG	2 cut(s)	430, 543
SduI	GDGCHC	2 cut(s)	17, 33
SfaNI	GCATC	9 cut(s)	13, 141, 510, 898, 912, 1076, 1147, 1391, 1406
SfcI	CTRYAG	2 cut(s)	568, 953
SinI	GGWCC	1 cut(s)	214
SmiMI	CAYNNNNRTG	1 cut(s)	681
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
SphI	GCATGC	1 cut(s)	680
Sse9I	AATT	9 cut(s)	352, 494, 598, 739, 885, 1011, 1026, 1293, 1308
SspI	AATATT	1 cut(s)	999
SspMI	CTAG	3 cut(s)	648, 786, 1052
SstI	GAGCTC	1 cut(s)	33
StyD4I	CCNGG	2 cut(s)	428, 541
StyI	CCWWGG	2 cut(s)	157, 1189
TaaI	ACNGT	2 cut(s)	139, 579
TaiI	ACGT	2 cut(s)	415, 950
TaqI	TCGA	5 cut(s)	21, 518, 894, 1038, 1098
TasI	AATT	9 cut(s)	352, 494, 598, 739, 885, 1011, 1026, 1293, 1308
TatI	WGTACW	1 cut(s)	87
TfiI	GAWTC	3 cut(s)	638, 896, 1225
Tru1I	TTAA	3 cut(s)	57, 105, 737
Tru9I	TTAA	3 cut(s)	57, 105, 737
TscAI	CASTG	2 cut(s)	849, 1201
TseFI	GTSAC	1 cut(s)	948
TseI	GCWGC	4 cut(s)	570, 710, 911, 968
Tsp45I	GTSAC	1 cut(s)	948
TspDTI	ATGAA	6 cut(s)	54, 396, 494, 591, 699, 1238
TspGWI	ACGGA	2 cut(s)	165, 272
TspRI	CASTG	2 cut(s)	849, 1201
Tth111I	GACNNNGTC	1 cut(s)	123
Van91I	CCANNNNNTGG	1 cut(s)	542
VpaK11BI	GGWCC	1 cut(s)	214
XapI	RAATTY	2 cut(s)	598, 1011
XbaI	TCTAGA	1 cut(s)	1051
XceI	RCATGY	2 cut(s)	680, 1036
XspI	CTAG	3 cut(s)	648, 786, 1052
ZrmI	AGTACT	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.