Rorug02G0480500

Histone-lysine N-methyltransferase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
61107186 .. 61108073
888 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0480500.1

Sequence Viewer

Length: 522 bp
ATGGAAAATTTGACTCAAGAAAATATTGTTCATGAGAAGAAAGGGATTTTTGGACTTGGGATTAGAAGTCGTAGCAAAATCAAGCCGAGCATGGCCGCAGATTTCCCGGACACTAATACTTTGAAGTATGCTCTTGGTGTCAATGAGTTTGAAGATTTTGAAGTCACAGAAGTTGATGGAACCATTCTGTGGGACTTGCTTGAAGAGTTGGAGAATGAAGAGAAGAAGAAGAGTGACAACAGTGAGCTCATTGGTCATGAACCTAATAATATGATGACCATTGCCGAGGTTTCGTTGGACAAGAACGAGATCTCCATTCCTGACTCAAACTCAAATTGGGTAGCGATGGATGATATGATGATGGAGACTGATCCATTACATGAAATAGAGGGTTGGTTCACAGATGACATGGTGGGAATGGTGGACTTTGGTTATAGTGTTGGTGATTACTCACAATTGCACAATGGAGTTGGAGCCTCCAGCAATGAAATTACTTACAATTGCTTGTGGGAAGAGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

173

Amino Acids

19.58

Weight (kDa)

4.12

Isoelectric Point (pI)

33.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 189
AciI CCGC 1 cut(s) 96
AclWI GGATC 1 cut(s) 365
AcoI YGGCCR 1 cut(s) 93
AcsI RAATTY 1 cut(s) 7
AfiI CCNNNNNNNGG 1 cut(s) 189
AgsI TTSAA 4 cut(s) 124, 152, 161, 203
AloI GAACNNNNNNTCC 2 cut(s) 296, 328
AluBI AGCT 2 cut(s) 247, 519
AluI AGCT 2 cut(s) 247, 519
Alw21I GWGCWC 1 cut(s) 249
Alw26I GTCTC 1 cut(s) 359
AlwI GGATC 1 cut(s) 365
AoxI GGCC 1 cut(s) 93
ApoI RAATTY 1 cut(s) 7
AsuC2I CCSGG 1 cut(s) 107
AsuHPI GGTGA 1 cut(s) 455
BanII GRGCYC 1 cut(s) 249
Bbv12I GWGCWC 1 cut(s) 249
BccI CCATC 3 cut(s) 170, 340, 355
BcnI CCSGG 1 cut(s) 107
BcoDI GTCTC 1 cut(s) 359
BglII AGATCT 1 cut(s) 309
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
Bme1390I CCNGG 1 cut(s) 107
BmiI GGNNCC 2 cut(s) 181, 475
BmrFI CCNGG 1 cut(s) 107
BpmI CTGGAG 1 cut(s) 463
BpuMI CCSGG 1 cut(s) 107
BsaJI CCNNGG 1 cut(s) 285
BsaXI ACNNNNNCTCC 2 cut(s) 296, 326
Bsc4I CCNNNNNNNGG 1 cut(s) 189
Bse3DI GCAATG 2 cut(s) 279, 490
BseDI CCNNGG 1 cut(s) 285
BseGI GGATG 1 cut(s) 355
BseLI CCNNNNNNNGG 1 cut(s) 189
BseMI GCAATG 2 cut(s) 279, 490
BshFI GGCC 1 cut(s) 95
BsiHKAI GWGCWC 1 cut(s) 249
BsiSI CCGG 1 cut(s) 107
BslFI GGGAC 1 cut(s) 206
BslI CCNNNNNNNGG 1 cut(s) 189
BsmAI GTCTC 1 cut(s) 359
BsmFI GGGAC 1 cut(s) 206
BsnI GGCC 1 cut(s) 95
Bsp1286I GDGCHC 1 cut(s) 249
Bsp143I GATC 2 cut(s) 309, 370
BspACI CCGC 1 cut(s) 96
BspANI GGCC 1 cut(s) 95
BspHI TCATGA 2 cut(s) 31, 256
BspLI GGNNCC 2 cut(s) 181, 475
BspPI GGATC 1 cut(s) 365
BsrDI GCAATG 2 cut(s) 279, 490
BssECI CCNNGG 1 cut(s) 285
BssMI GATC 2 cut(s) 309, 370
Bst4CI ACNGT 1 cut(s) 242
Bst6I CTCTTC 4 cut(s) 198, 213, 224, 507
BstF5I GGATG 1 cut(s) 355
BstKTI GATC 2 cut(s) 312, 373
BstMAI GTCTC 1 cut(s) 359
BstMBI GATC 2 cut(s) 309, 370
BstSCI CCNGG 1 cut(s) 105
BstX2I RGATCY 1 cut(s) 309
BstYI RGATCY 1 cut(s) 309
BsuRI GGCC 1 cut(s) 95
BtgZI GCGATG 1 cut(s) 359
BtsCI GGATG 1 cut(s) 355
BtsIMutI CAGTG 1 cut(s) 247
CciI TCATGA 2 cut(s) 31, 256
CviAII CATG 5 cut(s) 32, 91, 257, 380, 409
CviJI RGCY 5 cut(s) 85, 95, 247, 476, 519
CviKI_1 RGCY 5 cut(s) 85, 95, 247, 476, 519
DpnI GATC 2 cut(s) 311, 372
DpnII GATC 2 cut(s) 309, 370
EaeI YGGCCR 1 cut(s) 93
Eam1104I CTCTTC 4 cut(s) 198, 213, 224, 507
EarI CTCTTC 4 cut(s) 198, 213, 224, 507
Ecl136II GAGCTC 1 cut(s) 247
Eco24I GRGCYC 1 cut(s) 249
Eco53kI GAGCTC 1 cut(s) 247
EcoICRI GAGCTC 1 cut(s) 247
EcoT38I GRGCYC 1 cut(s) 249
FaeI CATG 5 cut(s) 35, 94, 260, 383, 412
FaiI YATR 9 cut(s) 33, 92, 129, 258, 272, 356, 381, 410, 435
FaqI GGGAC 1 cut(s) 206
FatI CATG 5 cut(s) 31, 90, 256, 379, 408
Fnu4HI GCNGC 1 cut(s) 96
FokI GGATG 1 cut(s) 362
FriOI GRGCYC 1 cut(s) 249
Fsp4HI GCNGC 1 cut(s) 96
GluI GCNGC 1 cut(s) 96
GsuI CTGGAG 1 cut(s) 463
HaeIII GGCC 1 cut(s) 95
HapII CCGG 1 cut(s) 107
Hin1II CATG 5 cut(s) 35, 94, 260, 383, 412
HinfI GANTC 2 cut(s) 13, 323
HpaII CCGG 1 cut(s) 107
HphI GGTGA 1 cut(s) 455
Hpy166II GTNNAC 2 cut(s) 399, 424
Hpy188III TCNNGA 4 cut(s) 17, 32, 257, 320
Hpy8I GTNNAC 2 cut(s) 399, 424
HpyCH4III ACNGT 1 cut(s) 242
HpyCH4V TGCA 1 cut(s) 460
Hsp92II CATG 5 cut(s) 35, 94, 260, 383, 412
Kzo9I GATC 2 cut(s) 309, 370
LmnI GCTCC 1 cut(s) 473
LpnPI CCDG 3 cut(s) 120, 333, 493
MaeIII GTNAC 2 cut(s) 163, 233
MalI GATC 2 cut(s) 311, 372
MboI GATC 2 cut(s) 309, 370
MboII GAAGA 7 cut(s) 49, 164, 215, 230, 235, 238, 241
MfeI CAATTG 2 cut(s) 455, 499
MflI RGATCY 1 cut(s) 309
MhlI GDGCHC 1 cut(s) 249
MluCI AATT 5 cut(s) 7, 334, 455, 489, 499
MlyI GAGTC 2 cut(s) 7, 317
MmeI TCCRAC 3 cut(s) 189, 276, 451
MnlI CCTC 3 cut(s) 280, 382, 487
MspI CCGG 1 cut(s) 107
MspR9I CCNGG 1 cut(s) 107
MunI CAATTG 2 cut(s) 455, 499
NciI CCSGG 1 cut(s) 107
NdeII GATC 2 cut(s) 309, 370
NlaIII CATG 5 cut(s) 35, 94, 260, 383, 412
NlaIV GGNNCC 2 cut(s) 181, 475
NmeAIII GCCGAG 2 cut(s) 111, 310
NmuCI GTSAC 2 cut(s) 163, 233
PagI TCATGA 2 cut(s) 31, 256
PflMI CCANNNNNTGG 1 cut(s) 189
PfoI TCCNGGA 1 cut(s) 105
PkrI GCNGC 1 cut(s) 97
PleI GAGTC 2 cut(s) 7, 317
PpsI GAGTC 2 cut(s) 7, 317
Psp124BI GAGCTC 1 cut(s) 249
PspN4I GGNNCC 2 cut(s) 181, 475
PsuI RGATCY 1 cut(s) 309
SacI GAGCTC 1 cut(s) 249
SatI GCNGC 1 cut(s) 96
Sau3AI GATC 2 cut(s) 309, 370
SchI GAGTC 2 cut(s) 7, 317
ScrFI CCNGG 1 cut(s) 107
SduI GDGCHC 1 cut(s) 249
SetI ASST 4 cut(s) 249, 265, 291, 521
SmlI CTYRAG 1 cut(s) 15
SmoI CTYRAG 1 cut(s) 15
Sse9I AATT 5 cut(s) 7, 334, 455, 489, 499
SsiI CCGC 1 cut(s) 96
SspI AATATT 1 cut(s) 25
SstI GAGCTC 1 cut(s) 249
StyD4I CCNGG 1 cut(s) 105
TaaI ACNGT 1 cut(s) 242
TasI AATT 5 cut(s) 7, 334, 455, 489, 499
TauI GCSGC 1 cut(s) 98
TscAI CASTG 1 cut(s) 247
TseFI GTSAC 2 cut(s) 163, 233
Tsp45I GTSAC 2 cut(s) 163, 233
TspDTI ATGAA 5 cut(s) 20, 231, 273, 396, 501
TspRI CASTG 1 cut(s) 247
Van91I CCANNNNNTGG 1 cut(s) 189
XapI RAATTY 1 cut(s) 7
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.