FvH4_6g43540

Histone-lysine N-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0005855
Physical Location & Seq
Reverse (-)
33662369 .. 33665885
3517 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g43540.t2

Sequence Viewer

Length: 1203 bp
ATGGAGAGCGAGTGCCCAATCGACGCGGAGCTCCGCCGCGAAATCTCAGCTCTTCTGGAACCTCCTCCACCTGCCCAAGTAGAACACTACTTGAACCAACTCATCCAAACCCGACAATGCCACGCCATCACTGTCAAACACAACGGCCACCTCGGCAAAGGTGTTTACGCTGTGTCGGACTTGGAAGGAGACGAGCTTGTCCTCAAGGACCAAATGCTCGTGGGGCATCAGCATTCTTCTAACAAGATTGAGTGTTTAGTTTGCAGCTTCTGTTTCCGGTTTGTTGGGTCTGTTGAGCAGCAAATCGGGAGGAGGCTTTATCTTCAAGAACTGGGAGTTTCTTCCGATTGTTGTCCTCAATCTGATGAGGAAGAAGAAGAGGAGTTGGGGCAATGTGGTTCGAGCAGTTCAGCTTACAAAGATAAGGTTCCACTTCCTAAAGGACTTGCAGAGGCTTTGATGAATGGTGAACTCAAACTGCCGTATTCGGATAAGTTTTCGATGCCTCAGGCTGTTTCATGCCCTGGGGGCTGTGGAGAAACTTATTACTGCAGTAAACTATGTGCAGAGTCGGATTGGAATTCATCACATTGCTTGCTTTGCACCGGGGAGAGGTCGGAGGCATTGAGTAGGGAGTCACTTGTGAAGTTTATACAGCATGCCAATGAAACCAATGATATATTCCTCCTCGCTGCGAAGGCAGTGGCTTCCACCATTTTAAACTATAGGAAGTTGAAATTAACTTGCTCTGAAGGAGACAATAAGCCTAATGTTTCAGGGAGTCCATATCTATCCTTACTCGTAGAAGCATGGAAGCCAATATCGGTGGGACACAAGAGAAGGTGGTGGGACTGTGTTGCATTGCCCATTGATGTCGAATCTTCTGATGAAGCTGCATTTAGGATGCAAATAAGAGAGCTGGCATTCACGTCACTACAGCTCCTAAAAGCAGCCATCTATGATGAGGAATGTAAACCAATATTCTCCCTTGAAATTTATGGACATATAATTGGCATGTTTGAGTTGAATAATCTAGATTTGGTTGTAGCATCTCCCGTGGAAGATTACTTTTTATACATCGATGATCTTCCAGATCCTGAAAAGAAAGAAGCTGAGGAGATTACACGACCATTTTTGGATGCTCTTGGTGATGACTATTCAGTTTGTTGCCAAGAGTTGTATGAATCATTCTTGTACACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SET zf-MYND

Protein Analysis

401

Amino Acids

44.78

Weight (kDa)

4.68

Isoelectric Point (pI)

56.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SET PF00856 370 - 441 4.7e-11 SET domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 79
AasI GACNNNNNNGTC 1 cut(s) 197
Acc36I ACCTGC 1 cut(s) 79
AccII CGCG 2 cut(s) 26, 39
AciI CCGC 3 cut(s) 26, 34, 37
AclWI GGATC 1 cut(s) 1088
AcoI YGGCCR 1 cut(s) 145
AcsI RAATTY 2 cut(s) 580, 993
AcuI CTGAAG 1 cut(s) 771
AfaI GTAC 1 cut(s) 1196
AfiI CCNNNNNNNGG 1 cut(s) 612
AgsI TTSAA 5 cut(s) 94, 326, 736, 992, 1027
AjiI CACGTC 1 cut(s) 930
AjnI CCWGG 1 cut(s) 523
AjuI GAANNNNNNNTTGG 2 cut(s) 665, 697
AluBI AGCT 9 cut(s) 31, 50, 196, 267, 413, 893, 919, 940, 1112
AluI AGCT 9 cut(s) 31, 50, 196, 267, 413, 893, 919, 940, 1112
Alw21I GWGCWC 1 cut(s) 33
Alw26I GTCTC 2 cut(s) 183, 750
AlwI GGATC 1 cut(s) 1088
AlwNI CAGNNNCTG 2 cut(s) 270, 1097
AoxI GGCC 1 cut(s) 145
ApeKI GCWGC 5 cut(s) 264, 298, 692, 893, 950
ApoI RAATTY 2 cut(s) 580, 993
AspS9I GGNCC 1 cut(s) 208
AsuC2I CCSGG 1 cut(s) 607
AsuHPI GGTGA 2 cut(s) 479, 1160
AvaII GGWCC 1 cut(s) 208
AxyI CCTNAGG 1 cut(s) 507
BaeGI GKGCMC 1 cut(s) 17
BanII GRGCYC 1 cut(s) 33
BauI CACGAG 1 cut(s) 218
Bbv12I GWGCWC 1 cut(s) 33
BbvCI CCTCAGC 1 cut(s) 1113
BbvI GCAGC 5 cut(s) 276, 310, 679, 880, 962
BccI CCATC 2 cut(s) 134, 962
BceAI ACGGC 2 cut(s) 160, 466
BciT130I CCWGG 1 cut(s) 525
BcnI CCSGG 1 cut(s) 607
BcoDI GTCTC 2 cut(s) 183, 750
BfaI CTAG 1 cut(s) 1034
BfmI CTRYAG 3 cut(s) 550, 724, 935
BfuAI ACCTGC 1 cut(s) 79
BglI GCCNNNNNGGC 2 cut(s) 153, 528
BisI GCNGC 6 cut(s) 37, 265, 299, 693, 894, 951
BlsI GCNGC 6 cut(s) 38, 266, 300, 694, 895, 952
Bme1390I CCNGG 2 cut(s) 525, 607
Bme18I GGWCC 1 cut(s) 208
BmgBI CACGTC 1 cut(s) 930
BmgT120I GGNCC 1 cut(s) 208
BmiI GGNNCC 2 cut(s) 60, 429
BmrFI CCNGG 2 cut(s) 525, 607
BmrI ACTGGG 1 cut(s) 341
BmsI GCATC 5 cut(s) 235, 492, 894, 1058, 1129
BmuI ACTGGG 1 cut(s) 341
Bpu10I CCTNAGC 1 cut(s) 1113
BpuEI CTTGAG 1 cut(s) 188
BpuMI CCSGG 1 cut(s) 607
Bsa29I ATCGAT 1 cut(s) 1080
BsaJI CCNNGG 5 cut(s) 151, 523, 524, 606, 1056
BsaWI WCCGGW 1 cut(s) 276
BsaXI ACNNNNNCTCC 3 cut(s) 26, 924, 954
Bsc4I CCNNNNNNNGG 1 cut(s) 612
Bse1I ACTGG 1 cut(s) 336
Bse21I CCTNAGG 1 cut(s) 507
Bse3DI GCAATG 3 cut(s) 398, 589, 860
BseBI CCWGG 1 cut(s) 525
BseCI ATCGAT 1 cut(s) 1080
BseDI CCNNGG 5 cut(s) 151, 523, 524, 606, 1056
BseGI GGATG 3 cut(s) 102, 909, 1144
BseLI CCNNNNNNNGG 1 cut(s) 612
BseMI GCAATG 3 cut(s) 398, 589, 860
BseMII CTCAG 3 cut(s) 60, 521, 1104
BseNI ACTGG 1 cut(s) 336
BseRI GAGGAG 5 cut(s) 54, 325, 395, 677, 1130
BseSI GKGCMC 1 cut(s) 17
BseXI GCAGC 5 cut(s) 276, 310, 679, 880, 962
BsgI GTGCAG 1 cut(s) 585
Bsh1236I CGCG 2 cut(s) 26, 39
BshFI GGCC 1 cut(s) 147
BshVI ATCGAT 1 cut(s) 1080
BsiHKAI GWGCWC 1 cut(s) 33
BsiSI CCGG 2 cut(s) 277, 606
BslFI GGGAC 2 cut(s) 843, 863
BslI CCNNNNNNNGG 1 cut(s) 612
BsmAI GTCTC 2 cut(s) 183, 750
BsmBI CGTCTC 1 cut(s) 183
BsmFI GGGAC 2 cut(s) 843, 863
BsmI GAATGC 2 cut(s) 232, 923
BsnI GGCC 1 cut(s) 147
Bsp1286I GDGCHC 2 cut(s) 17, 33
Bsp1407I TGTACA 1 cut(s) 1194
Bsp143I GATC 2 cut(s) 1084, 1093
BspACI CCGC 3 cut(s) 26, 34, 37
BspANI GGCC 1 cut(s) 147
BspCNI CTCAG 3 cut(s) 59, 520, 1105
BspDI ATCGAT 1 cut(s) 1080
BspFNI CGCG 2 cut(s) 26, 39
BspLI GGNNCC 2 cut(s) 60, 429
BspMAI CTGCAG 1 cut(s) 554
BspMI ACCTGC 1 cut(s) 79
BspPI GGATC 1 cut(s) 1088
BspQI GCTCTTC 1 cut(s) 57
BsrDI GCAATG 3 cut(s) 398, 589, 860
BsrGI TGTACA 1 cut(s) 1194
BsrI ACTGG 1 cut(s) 336
BssECI CCNNGG 5 cut(s) 151, 523, 524, 606, 1056
BssMI GATC 2 cut(s) 1084, 1093
BssSI CACGAG 1 cut(s) 218
Bst2BI CACGAG 1 cut(s) 218
Bst2UI CCWGG 1 cut(s) 525
Bst4CI ACNGT 2 cut(s) 133, 854
Bst6I CTCTTC 2 cut(s) 57, 372
BstAUI TGTACA 1 cut(s) 1194
BstC8I GCNNGC 3 cut(s) 596, 660, 921
BstDEI CTNAG 3 cut(s) 46, 507, 1113
BstDSI CCRYGG 1 cut(s) 1056
BstF5I GGATG 3 cut(s) 102, 909, 1144
BstFNI CGCG 2 cut(s) 26, 39
BstKTI GATC 2 cut(s) 1087, 1096
BstMAI GTCTC 2 cut(s) 183, 750
BstMBI GATC 2 cut(s) 1084, 1093
BstMWI GCNNNNNNNGC 5 cut(s) 153, 223, 528, 600, 698
BstNI CCWGG 1 cut(s) 525
BstNSI RCATGY 2 cut(s) 662, 1018
BstSCI CCNGG 2 cut(s) 523, 605
BstSFI CTRYAG 3 cut(s) 550, 724, 935
BstSLI GKGCMC 1 cut(s) 17
BstUI CGCG 2 cut(s) 26, 39
BstV1I GCAGC 5 cut(s) 276, 310, 679, 880, 962
BstX2I RGATCY 1 cut(s) 1093
BstYI RGATCY 1 cut(s) 1093
Bsu15I ATCGAT 1 cut(s) 1080
Bsu36I CCTNAGG 1 cut(s) 507
BsuRI GGCC 1 cut(s) 147
BsuTUI ATCGAT 1 cut(s) 1080
BtgI CCRYGG 1 cut(s) 1056
BtrI CACGTC 1 cut(s) 930
BtsCI GGATG 3 cut(s) 102, 909, 1144
BtsI GCAGTG 1 cut(s) 708
BtsIMutI CAGTG 2 cut(s) 129, 708
BveI ACCTGC 1 cut(s) 79
Cac8I GCNNGC 3 cut(s) 596, 660, 921
CaiI CAGNNNCTG 2 cut(s) 270, 1097
Cfr13I GGNCC 1 cut(s) 208
ClaI ATCGAT 1 cut(s) 1080
CseI GACGC 1 cut(s) 32
Csp6I GTAC 1 cut(s) 1195
CspCI CAANNNNNGTGG 2 cut(s) 807, 842
CviAII CATG 4 cut(s) 519, 659, 810, 1015
CviQI GTAC 1 cut(s) 1195
DdeI CTNAG 3 cut(s) 46, 507, 1113
DpnI GATC 2 cut(s) 1086, 1095
DpnII GATC 2 cut(s) 1084, 1093
DraI TTTAAA 1 cut(s) 720
DrdI GACNNNNNNGTC 1 cut(s) 197
DseDI GACNNNNNNGTC 1 cut(s) 197
EaeI YGGCCR 1 cut(s) 145
Eam1104I CTCTTC 2 cut(s) 57, 372
EarI CTCTTC 2 cut(s) 57, 372
EciI GGCGGA 1 cut(s) 23
Ecl136II GAGCTC 1 cut(s) 31
Eco24I GRGCYC 1 cut(s) 33
Eco47I GGWCC 1 cut(s) 208
Eco53kI GAGCTC 1 cut(s) 31
Eco57I CTGAAG 1 cut(s) 771
Eco81I CCTNAGG 1 cut(s) 507
EcoICRI GAGCTC 1 cut(s) 31
EcoRI GAATTC 1 cut(s) 580
EcoRII CCWGG 1 cut(s) 523
EcoT38I GRGCYC 1 cut(s) 33
Esp3I CGTCTC 1 cut(s) 183
FaeI CATG 4 cut(s) 522, 662, 813, 1018
FaqI GGGAC 2 cut(s) 843, 863
FatI CATG 4 cut(s) 518, 658, 809, 1014
Fnu4HI GCNGC 6 cut(s) 37, 265, 299, 693, 894, 951
FokI GGATG 3 cut(s) 89, 916, 1151
FriOI GRGCYC 1 cut(s) 33
Fsp4HI GCNGC 6 cut(s) 37, 265, 299, 693, 894, 951
FspBI CTAG 1 cut(s) 1034
GluI GCNGC 6 cut(s) 37, 265, 299, 693, 894, 951
HaeIII GGCC 1 cut(s) 147
HapII CCGG 2 cut(s) 277, 606
HgaI GACGC 1 cut(s) 32
Hin1II CATG 4 cut(s) 522, 662, 813, 1018
HinfI GANTC 5 cut(s) 569, 635, 781, 878, 1184
HpaII CCGG 2 cut(s) 277, 606
HphI GGTGA 2 cut(s) 479, 1160
Hpy166II GTNNAC 5 cut(s) 166, 470, 557, 974, 1197
Hpy188I TCNGA 8 cut(s) 178, 346, 364, 490, 574, 619, 751, 886
Hpy188III TCNNGA 6 cut(s) 56, 307, 326, 1034, 1091, 1097
Hpy8I GTNNAC 5 cut(s) 166, 470, 557, 974, 1197
Hpy99I CGWCG 1 cut(s) 26
HpyAV CCTTC 4 cut(s) 179, 691, 746, 834
HpyCH4III ACNGT 2 cut(s) 133, 854
HpyCH4IV ACGT 1 cut(s) 929
HpyCH4V TGCA 8 cut(s) 264, 449, 552, 566, 603, 860, 896, 907
HpyF10VI GCNNNNNNNGC 5 cut(s) 153, 223, 528, 600, 698
HpyF3I CTNAG 3 cut(s) 46, 507, 1113
HpySE526I ACGT 1 cut(s) 929
Hsp92II CATG 4 cut(s) 522, 662, 813, 1018
Kzo9I GATC 2 cut(s) 1084, 1093
LguI GCTCTTC 1 cut(s) 57
LmnI GCTCC 3 cut(s) 28, 36, 945
Lsp1109I GCAGC 5 cut(s) 276, 310, 679, 880, 962
LweI GCATC 5 cut(s) 235, 492, 894, 1058, 1129
MaeI CTAG 1 cut(s) 1034
MaeII ACGT 1 cut(s) 929
MaeIII GTNAC 2 cut(s) 636, 930
MalI GATC 2 cut(s) 1086, 1095
MboI GATC 2 cut(s) 1084, 1093
MflI RGATCY 1 cut(s) 1093
MhlI GDGCHC 2 cut(s) 17, 33
MluCI AATT 4 cut(s) 580, 737, 993, 1008
MlyI GAGTC 3 cut(s) 578, 644, 790
MmeI TCCRAC 3 cut(s) 156, 552, 597
MseI TTAA 2 cut(s) 719, 740
MslI CAYNNNNRTG 1 cut(s) 663
MspI CCGG 2 cut(s) 277, 606
MspR9I CCNGG 2 cut(s) 525, 607
Mva1269I GAATGC 2 cut(s) 232, 923
MvaI CCWGG 1 cut(s) 525
MvnI CGCG 2 cut(s) 26, 39
MwoI GCNNNNNNNGC 5 cut(s) 153, 223, 528, 600, 698
NciI CCSGG 1 cut(s) 607
NdeII GATC 2 cut(s) 1084, 1093
NlaIII CATG 4 cut(s) 522, 662, 813, 1018
NlaIV GGNNCC 2 cut(s) 60, 429
NmeAIII GCCGAG 1 cut(s) 132
NmuCI GTSAC 2 cut(s) 636, 930
NspI RCATGY 2 cut(s) 662, 1018
PaeI GCATGC 1 cut(s) 662
PaqCI CACCTGC 1 cut(s) 79
PasI CCCWGGG 1 cut(s) 524
PciSI GCTCTTC 1 cut(s) 57
PctI GAATGC 2 cut(s) 232, 923
PfeI GAWTC 2 cut(s) 878, 1184
PkrI GCNGC 6 cut(s) 38, 266, 300, 694, 895, 952
PleI GAGTC 3 cut(s) 577, 643, 789
PpsI GAGTC 3 cut(s) 577, 643, 789
Psp124BI GAGCTC 1 cut(s) 33
Psp6I CCWGG 1 cut(s) 523
PspGI CCWGG 1 cut(s) 523
PspN4I GGNNCC 2 cut(s) 60, 429
PspPI GGNCC 1 cut(s) 208
PstI CTGCAG 1 cut(s) 554
PstNI CAGNNNCTG 2 cut(s) 270, 1097
PsuI RGATCY 1 cut(s) 1093
RsaI GTAC 1 cut(s) 1196
RsaNI GTAC 1 cut(s) 1195
RseI CAYNNNNRTG 1 cut(s) 663
SacI GAGCTC 1 cut(s) 33
SapI GCTCTTC 1 cut(s) 57
SaqAI TTAA 2 cut(s) 719, 740
SatI GCNGC 6 cut(s) 37, 265, 299, 693, 894, 951
Sau3AI GATC 2 cut(s) 1084, 1093
Sau96I GGNCC 1 cut(s) 208
SchI GAGTC 3 cut(s) 578, 644, 790
ScrFI CCNGG 2 cut(s) 525, 607
SduI GDGCHC 2 cut(s) 17, 33
SfaNI GCATC 5 cut(s) 235, 492, 894, 1058, 1129
SfcI CTRYAG 3 cut(s) 550, 724, 935
SinI GGWCC 1 cut(s) 208
SmiMI CAYNNNNRTG 1 cut(s) 663
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
SphI GCATGC 1 cut(s) 662
Sse9I AATT 4 cut(s) 580, 737, 993, 1008
SsiI CCGC 3 cut(s) 26, 34, 37
SspI AATATT 1 cut(s) 981
SspMI CTAG 1 cut(s) 1034
SstI GAGCTC 1 cut(s) 33
StyD4I CCNGG 2 cut(s) 523, 605
TaaI ACNGT 2 cut(s) 133, 854
TaiI ACGT 1 cut(s) 932
TaqI TCGA 5 cut(s) 21, 401, 500, 876, 1080
TasI AATT 4 cut(s) 580, 737, 993, 1008
TatI WGTACW 1 cut(s) 1194
TauI GCSGC 1 cut(s) 39
TfiI GAWTC 2 cut(s) 878, 1184
Tru1I TTAA 2 cut(s) 719, 740
Tru9I TTAA 2 cut(s) 719, 740
TscAI CASTG 2 cut(s) 136, 708
TseFI GTSAC 2 cut(s) 636, 930
TseI GCWGC 5 cut(s) 264, 298, 692, 893, 950
Tsp45I GTSAC 2 cut(s) 636, 930
TspDTI ATGAA 6 cut(s) 476, 507, 573, 681, 903, 1197
TspRI CASTG 2 cut(s) 136, 708
VpaK11BI GGWCC 1 cut(s) 208
XapI RAATTY 2 cut(s) 580, 993
XbaI TCTAGA 1 cut(s) 1033
XceI RCATGY 2 cut(s) 662, 1018
XspI CTAG 1 cut(s) 1034
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.