Rroxscaffold_2G00090050

Histone-lysine N-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0005855
Physical Location & Seq
Forward (+)
11901683 .. 11915436
13754 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00090050.1

Sequence Viewer

Length: 1467 bp
ATGGTCTTCCGAGAGTTGTCTCATAAGTGCATAACTCGATGGAAGACTAATCGAAGCTTTAATACAAACTTGGTTTGGTTTAATTCAATGCAATTTAAAGGAGCAAACAGAGTAATTAAGTCATCACTAATATCATCCAACATCACCAAAAATGTACACACAGGAATGAGATTCCAAAGCAACATCAAACTTCTGGATGACCCCGTCGTATGTGGATGCGGCCCTCGATCCCGGAAAGGATATGTTCCTTTCTTCCGGTTCCGTGGTGGCCGCGATGTGGTGCGTGGTGGTGCGGCGCCGGGCGCCGCACGGCGTTGCTTAGTATTTAGTAATTTCTTTCGTGTTCGTTGTTTTATTAAACTGAGTGAAGGAAGAAAGCTTCTGTGCAGCAGCATCAGTAGGAACAAGGTTCTATCGGCTTTGGAAGATGCTGGGGTTTTCACATCTGGGGGTTTGGTCAAAGACAAGTGTGACTTGCTTTCACTACCTGATAAAATCAATTATTCATTGTTTATTGCACAGTGTTCTCTTTTCTTCTCGGACCAAATGCTTCTTCTGTTTCCGTTTTCAGTTCCGGAAGCTGGAGAAGCTTATTACTGCAGCAAACTATGTGCAGAGTCTGATTGGAATTCATGCCATTCCTTACTTTGCACGGGGGAGAGGTCAGAATCAGTCTCTAGGGAGGCACTTGTGAAGTTTATACAGCATGCCAATGAAACCAATGATATATTCCTCCTTGCTGCGAAGGCAGTGGCTTCCACCATTTTAAATTATAGGAAGTTGAAAGTAACTCGGTCTGAAGGAGACAATAAGCCTAGCGTTTCAGGGAGTCCATATCTATCCTTACTCTTAGAAGCATGGAAGCCAATATCAGTGGGACACAAGAGAAGGTGGTGGGACTGCGTTGCGTTGCCAATTGATGTCGAATCTTCTGATGAAGCTGCATTTAGGATGCAAATAAGAGAGCTGGCATTCACGTCACTACAGCTCCTAAAAGCAGCCATCTTTGATGAGGAATGTAAACCAATATTCTCCCTTGAAATTTATGGACATATAATTGGCATGTTCGAGTTGAATAATCTAGATTTGGTTGTAGCATCTCCTGTGGAAGATTATTTTTTATACATTGATGATCTTCCAGATCCTATAAAGAAAGAAGTTGAGGAGATTACACGACCATTTTTGGATGCTCTTGGTGATGGCTATTCAGTTTGTTGCCAAGGCACTGCATTTTATCCTCTTCAGAGTTGTATGAATCATTCTTGTAGTCCCAATGCCAAAGCATTCAAAAGAGAGGAGGACAGAGATGGTCAAGCAACAATAATTGCACTAAAACCAATTTTTAAGGGAGAGGAGGTTACTATTTCTTATGTGGATGAGGACATTCCTTTCGAGGAGAGACAAGCATTACTAGCAGATTATGGTTTTAGATGCAGGTGTCCAAGATGCTTAGAAGAAGAACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SET zf-MYND

Protein Analysis

488

Amino Acids

55.04

Weight (kDa)

7.39

Isoelectric Point (pI)

46.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SET PF00856 383 - 457 8.4e-11 SET domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1425
Acc36I ACCTGC 1 cut(s) 1425
AccB1I GGYRCC 2 cut(s) 295, 302
AccII CGCG 1 cut(s) 273
AccIII TCCGGA 1 cut(s) 574
AciI CCGC 4 cut(s) 219, 271, 293, 306
AclWI GGATC 2 cut(s) 222, 1136
AcoI YGGCCR 1 cut(s) 268
AcsI RAATTY 2 cut(s) 628, 1041
AcuI CTGAAG 2 cut(s) 819, 1226
AcyI GRCGYC 2 cut(s) 296, 303
AfaI GTAC 1 cut(s) 156
AfiI CCNNNNNNNGG 2 cut(s) 277, 581
AgsI TTSAA 5 cut(s) 87, 784, 1040, 1075, 1288
AjiI CACGTC 1 cut(s) 978
AjuI GAANNNNNNNTTGG 4 cut(s) 537, 569, 713, 745
AluBI AGCT 7 cut(s) 57, 379, 581, 590, 941, 967, 988
AluI AGCT 7 cut(s) 57, 379, 581, 590, 941, 967, 988
Alw26I GTCTC 4 cut(s) 24, 679, 798, 1393
AlwI GGATC 2 cut(s) 222, 1136
AlwNI CAGNNNCTG 1 cut(s) 620
Aor13HI TCCGGA 1 cut(s) 574
AoxI GGCC 2 cut(s) 220, 268
ApeKI GCWGC 6 cut(s) 387, 390, 600, 740, 941, 998
ApoI RAATTY 2 cut(s) 628, 1041
ArsI GACNNNNNNTTYG 2 cut(s) 1373, 1405
AspLEI GCGC 2 cut(s) 298, 305
AspS9I GGNCC 2 cut(s) 221, 541
AsuC2I CCSGG 2 cut(s) 232, 300
AsuHPI GGTGA 2 cut(s) 136, 1208
AvaII GGWCC 1 cut(s) 541
BanI GGYRCC 2 cut(s) 295, 302
BarI GAAGNNNNNNTAC 2 cut(s) 46, 78
BbsI GAAGAC 1 cut(s) 50
BbvI GCAGC 6 cut(s) 399, 402, 612, 727, 928, 1010
BccI CCATC 4 cut(s) 33, 1010, 1193, 1301
BceAI ACGGC 1 cut(s) 326
BcnI CCSGG 2 cut(s) 232, 300
BcoDI GTCTC 4 cut(s) 24, 679, 798, 1393
BfaI CTAG 4 cut(s) 678, 816, 1082, 1412
BfmI CTRYAG 2 cut(s) 598, 983
BfoI RGCGCY 2 cut(s) 299, 306
BfuAI ACCTGC 1 cut(s) 1425
Bme1390I CCNGG 2 cut(s) 232, 300
Bme18I GGWCC 1 cut(s) 541
BmgBI CACGTC 1 cut(s) 978
BmgT120I GGNCC 2 cut(s) 221, 541
BmiI GGNNCC 3 cut(s) 260, 297, 304
BmrFI CCNGG 2 cut(s) 232, 300
BmsI GCATC 8 cut(s) 206, 402, 418, 942, 1106, 1177, 1421, 1436
BpiI GAAGAC 1 cut(s) 50
BpmI CTGGAG 1 cut(s) 603
BpuMI CCSGG 2 cut(s) 232, 300
BsaHI GRCGYC 2 cut(s) 296, 303
BsaJI CCNNGG 2 cut(s) 262, 1219
BsaWI WCCGGW 2 cut(s) 255, 574
BsaXI ACNNNNNCTCC 4 cut(s) 972, 1002, 1341, 1371
Bsc4I CCNNNNNNNGG 2 cut(s) 277, 581
BseAI TCCGGA 1 cut(s) 574
BseDI CCNNGG 2 cut(s) 262, 1219
BseGI GGATG 6 cut(s) 134, 202, 221, 957, 1192, 1381
BseLI CCNNNNNNNGG 2 cut(s) 277, 581
BseMII CTCAG 1 cut(s) 353
BseRI GAGGAG 4 cut(s) 1178, 1310, 1367, 1409
BseXI GCAGC 6 cut(s) 399, 402, 612, 727, 928, 1010
BseYI CCCAGC 1 cut(s) 431
BsgI GTGCAG 2 cut(s) 406, 633
Bsh1236I CGCG 1 cut(s) 273
BshFI GGCC 2 cut(s) 222, 270
BshNI GGYRCC 2 cut(s) 295, 302
BsiSI CCGG 4 cut(s) 232, 256, 299, 575
BslFI GGGAC 3 cut(s) 891, 911, 1254
BslI CCNNNNNNNGG 2 cut(s) 277, 581
BsmAI GTCTC 4 cut(s) 24, 679, 798, 1393
BsmFI GGGAC 3 cut(s) 891, 911, 1254
BsmI GAATGC 2 cut(s) 971, 1283
BsnI GGCC 2 cut(s) 222, 270
Bsp13I TCCGGA 1 cut(s) 574
Bsp1407I TGTACA 1 cut(s) 154
Bsp143I GATC 3 cut(s) 227, 1132, 1141
BspACI CCGC 4 cut(s) 219, 271, 293, 306
BspANI GGCC 2 cut(s) 222, 270
BspCNI CTCAG 1 cut(s) 354
BspEI TCCGGA 1 cut(s) 574
BspFNI CGCG 1 cut(s) 273
BspLI GGNNCC 3 cut(s) 260, 297, 304
BspMAI CTGCAG 1 cut(s) 602
BspMI ACCTGC 1 cut(s) 1425
BspPI GGATC 2 cut(s) 222, 1136
BspT107I GGYRCC 2 cut(s) 295, 302
BsrGI TGTACA 1 cut(s) 154
BssECI CCNNGG 2 cut(s) 262, 1219
BssMI GATC 3 cut(s) 227, 1132, 1141
BssNI GRCGYC 2 cut(s) 296, 303
BssT1I CCWWGG 1 cut(s) 1219
Bst4CI ACNGT 1 cut(s) 522
Bst6I CTCTTC 1 cut(s) 1245
BstACI GRCGYC 2 cut(s) 296, 303
BstAUI TGTACA 1 cut(s) 154
BstC8I GCNNGC 2 cut(s) 708, 969
BstDEI CTNAG 4 cut(s) 319, 362, 850, 1450
BstDSI CCRYGG 1 cut(s) 262
BstF5I GGATG 6 cut(s) 134, 202, 221, 957, 1192, 1381
BstFNI CGCG 1 cut(s) 273
BstH2I RGCGCY 2 cut(s) 299, 306
BstHHI GCGC 2 cut(s) 298, 305
BstKTI GATC 3 cut(s) 230, 1135, 1144
BstMAI GTCTC 4 cut(s) 24, 679, 798, 1393
BstMBI GATC 3 cut(s) 227, 1132, 1141
BstMWI GCNNNNNNNGC 4 cut(s) 302, 587, 746, 1412
BstNSI RCATGY 2 cut(s) 710, 1066
BstSCI CCNGG 2 cut(s) 230, 298
BstSFI CTRYAG 2 cut(s) 598, 983
BstUI CGCG 1 cut(s) 273
BstV1I GCAGC 6 cut(s) 399, 402, 612, 727, 928, 1010
BstV2I GAAGAC 1 cut(s) 50
BstX2I RGATCY 1 cut(s) 1141
BstYI RGATCY 1 cut(s) 1141
BsuRI GGCC 2 cut(s) 222, 270
BtgI CCRYGG 1 cut(s) 262
BtgZI GCGATG 1 cut(s) 288
BtrI CACGTC 1 cut(s) 978
BtsCI GGATG 6 cut(s) 134, 202, 221, 957, 1192, 1381
BtsI GCAGTG 2 cut(s) 756, 1224
BtsIMutI CAGTG 4 cut(s) 527, 756, 879, 1224
BveI ACCTGC 1 cut(s) 1425
Cac8I GCNNGC 2 cut(s) 708, 969
CaiI CAGNNNCTG 1 cut(s) 620
CfoI GCGC 2 cut(s) 298, 305
Cfr13I GGNCC 2 cut(s) 221, 541
Csp6I GTAC 1 cut(s) 155
CspCI CAANNNNNGTGG 2 cut(s) 855, 890
CviAII CATG 4 cut(s) 633, 707, 858, 1063
CviQI GTAC 1 cut(s) 155
DdeI CTNAG 4 cut(s) 319, 362, 850, 1450
DinI GGCGCC 2 cut(s) 297, 304
DpnI GATC 3 cut(s) 229, 1134, 1143
DpnII GATC 3 cut(s) 227, 1132, 1141
DraI TTTAAA 2 cut(s) 97, 768
EaeI YGGCCR 1 cut(s) 268
Eam1104I CTCTTC 1 cut(s) 1245
EarI CTCTTC 1 cut(s) 1245
Eco130I CCWWGG 1 cut(s) 1219
Eco47I GGWCC 1 cut(s) 541
Eco57I CTGAAG 2 cut(s) 819, 1226
EcoRI GAATTC 1 cut(s) 628
EcoT14I CCWWGG 1 cut(s) 1219
EgeI GGCGCC 2 cut(s) 297, 304
EheI GGCGCC 2 cut(s) 297, 304
ErhI CCWWGG 1 cut(s) 1219
FaeI CATG 4 cut(s) 636, 710, 861, 1066
FalI AAGNNNNNCTT 2 cut(s) 458, 490
FaqI GGGAC 3 cut(s) 891, 911, 1254
FatI CATG 4 cut(s) 632, 706, 857, 1062
FokI GGATG 6 cut(s) 121, 209, 228, 964, 1199, 1388
FspBI CTAG 4 cut(s) 678, 816, 1082, 1412
GlaI GCGC 2 cut(s) 297, 304
GsaI CCCAGC 1 cut(s) 435
GsuI CTGGAG 1 cut(s) 603
HaeII RGCGCY 2 cut(s) 299, 306
HaeIII GGCC 2 cut(s) 222, 270
HapII CCGG 4 cut(s) 232, 256, 299, 575
HhaI GCGC 2 cut(s) 298, 305
Hin1I GRCGYC 2 cut(s) 296, 303
Hin1II CATG 4 cut(s) 636, 710, 861, 1066
Hin6I GCGC 2 cut(s) 296, 303
HinP1I GCGC 2 cut(s) 296, 303
HindIII AAGCTT 3 cut(s) 55, 377, 588
HinfI GANTC 6 cut(s) 171, 617, 668, 829, 926, 1255
HpaII CCGG 4 cut(s) 232, 256, 299, 575
HphI GGTGA 2 cut(s) 136, 1208
Hpy166II GTNNAC 2 cut(s) 157, 1022
Hpy188I TCNGA 7 cut(s) 11, 541, 622, 667, 799, 934, 1245
Hpy188III TCNNGA 4 cut(s) 194, 575, 1082, 1139
Hpy8I GTNNAC 2 cut(s) 157, 1022
Hpy99I CGWCG 1 cut(s) 209
HpyAV CCTTC 4 cut(s) 362, 739, 794, 882
HpyCH4III ACNGT 1 cut(s) 522
HpyCH4IV ACGT 1 cut(s) 977
HpyF10VI GCNNNNNNNGC 4 cut(s) 302, 587, 746, 1412
HpyF3I CTNAG 4 cut(s) 319, 362, 850, 1450
HpySE526I ACGT 1 cut(s) 977
Hsp92I GRCGYC 2 cut(s) 296, 303
Hsp92II CATG 4 cut(s) 636, 710, 861, 1066
HspAI GCGC 2 cut(s) 296, 303
KasI GGCGCC 2 cut(s) 295, 302
Kpn2I TCCGGA 1 cut(s) 574
Kzo9I GATC 3 cut(s) 227, 1132, 1141
LmnI GCTCC 2 cut(s) 101, 993
Lsp1109I GCAGC 6 cut(s) 399, 402, 612, 727, 928, 1010
LweI GCATC 8 cut(s) 206, 402, 418, 942, 1106, 1177, 1421, 1436
MaeI CTAG 4 cut(s) 678, 816, 1082, 1412
MaeII ACGT 1 cut(s) 977
MaeIII GTNAC 4 cut(s) 470, 787, 978, 1357
MalI GATC 3 cut(s) 229, 1134, 1143
MboI GATC 3 cut(s) 227, 1132, 1141
MfeI CAATTG 1 cut(s) 915
MflI RGATCY 1 cut(s) 1141
Mly113I GGCGCC 2 cut(s) 296, 303
MlyI GAGTC 2 cut(s) 626, 838
MmeI TCCRAC 1 cut(s) 162
MroI TCCGGA 1 cut(s) 574
MseI TTAA 7 cut(s) 60, 81, 96, 117, 357, 767, 1344
MslI CAYNNNNRTG 2 cut(s) 164, 711
MspI CCGG 4 cut(s) 232, 256, 299, 575
MspR9I CCNGG 2 cut(s) 232, 300
MunI CAATTG 1 cut(s) 915
Mva1269I GAATGC 2 cut(s) 971, 1283
MvnI CGCG 1 cut(s) 273
MwoI GCNNNNNNNGC 4 cut(s) 302, 587, 746, 1412
NarI GGCGCC 2 cut(s) 296, 303
NciI CCSGG 2 cut(s) 232, 300
NdeII GATC 3 cut(s) 227, 1132, 1141
NlaIII CATG 4 cut(s) 636, 710, 861, 1066
NlaIV GGNNCC 3 cut(s) 260, 297, 304
NmuCI GTSAC 2 cut(s) 470, 978
NspI RCATGY 2 cut(s) 710, 1066
PaeI GCATGC 1 cut(s) 710
PaqCI CACCTGC 1 cut(s) 1425
PctI GAATGC 2 cut(s) 971, 1283
PfeI GAWTC 4 cut(s) 171, 668, 926, 1255
PflFI GACNNNGTC 1 cut(s) 203
PfoI TCCNGGA 1 cut(s) 230
PleI GAGTC 2 cut(s) 625, 837
PluTI GGCGCC 2 cut(s) 299, 306
PpsI GAGTC 2 cut(s) 625, 837
PspFI CCCAGC 1 cut(s) 431
PspN4I GGNNCC 3 cut(s) 260, 297, 304
PspPI GGNCC 2 cut(s) 221, 541
PstI CTGCAG 1 cut(s) 602
PstNI CAGNNNCTG 1 cut(s) 620
PsuI RGATCY 1 cut(s) 1141
PsyI GACNNNGTC 1 cut(s) 203
RsaI GTAC 1 cut(s) 156
RsaNI GTAC 1 cut(s) 155
RseI CAYNNNNRTG 2 cut(s) 164, 711
SaqAI TTAA 7 cut(s) 60, 81, 96, 117, 357, 767, 1344
Sau3AI GATC 3 cut(s) 227, 1132, 1141
Sau96I GGNCC 2 cut(s) 221, 541
SchI GAGTC 2 cut(s) 626, 838
ScrFI CCNGG 2 cut(s) 232, 300
SfaNI GCATC 8 cut(s) 206, 402, 418, 942, 1106, 1177, 1421, 1436
SfcI CTRYAG 2 cut(s) 598, 983
SfoI GGCGCC 2 cut(s) 297, 304
SinI GGWCC 1 cut(s) 541
SmiMI CAYNNNNRTG 2 cut(s) 164, 711
SphI GCATGC 1 cut(s) 710
SsiI CCGC 4 cut(s) 219, 271, 293, 306
SspDI GGCGCC 2 cut(s) 295, 302
SspI AATATT 1 cut(s) 1029
SspMI CTAG 4 cut(s) 678, 816, 1082, 1412
StyD4I CCNGG 2 cut(s) 230, 298
StyI CCWWGG 1 cut(s) 1219
TaaI ACNGT 1 cut(s) 522
TaiI ACGT 1 cut(s) 980
TaqI TCGA 6 cut(s) 37, 52, 226, 924, 1068, 1392
TaqII GACCGA 1 cut(s) 783
TatI WGTACW 1 cut(s) 154
TauI GCSGC 4 cut(s) 222, 273, 296, 308
TfiI GAWTC 4 cut(s) 171, 668, 926, 1255
Tru1I TTAA 7 cut(s) 60, 81, 96, 117, 357, 767, 1344
Tru9I TTAA 7 cut(s) 60, 81, 96, 117, 357, 767, 1344
TscAI CASTG 4 cut(s) 527, 756, 879, 1231
TseFI GTSAC 2 cut(s) 470, 978
TseI GCWGC 6 cut(s) 387, 390, 600, 740, 941, 998
Tsp45I GTSAC 2 cut(s) 470, 978
TspDTI ATGAA 5 cut(s) 495, 621, 729, 951, 1268
TspGWI ACGGA 2 cut(s) 251, 552
TspRI CASTG 4 cut(s) 527, 756, 879, 1231
Tth111I GACNNNGTC 1 cut(s) 203
VpaK11BI GGWCC 1 cut(s) 541
XapI RAATTY 2 cut(s) 628, 1041
XbaI TCTAGA 1 cut(s) 1081
XceI RCATGY 2 cut(s) 710, 1066
XspI CTAG 4 cut(s) 678, 816, 1082, 1412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.