AT3G21870

Cyclin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0012469
Physical Location & Seq
Reverse (-)
7703799 .. 7704958
1160 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G21870.1

Sequence Viewer

Length: 633 bp
ATGTTAACCGCAGCCGGAGACGATGAACTGGACCCGGTCGTGGGACCAGAATCGGCAACGGAAGCAGCCACTCCAAGAGTGCTGACTATAATCTCCCATGTGATGGAGAAGCTCGTGGCACGAAACGAGTGGTTAGCTAAGCAAACTAAGGGATTTGGGAAGAGCTTGGAGGCGTTTCACGGCGTGAGAGCGCCGAGCATAAGTATAGCTAAATACCTTGAGAGGATATATAAGTACACAAAATGTAGCCCGGCATGTTTCGTTGTTGGGTATGTGTACATAGACCGGTTGGCTCATAAGCATCCTGGTTCTTTGGTTGTCTCCTTGAATGTTCATAGACTCCTCGTCACTTGTGTCATGATTGCTGCCAAGATACTAGATGACGTGCACTACAACAACGAGTTCTATGCTCGGGTTGGAGGCGTAAGCAATGCAGACTTGAACAAAATGGAGTTGGAGCTTCTCTTTCTTCTTGACTTTAGAGTTACTGTGAGTTTTAGAGTTTTCGAGAGCTATTGCTTTCACCTCGAAAAAGAGATGCAACTAAACGACGCCGTTTCTTCCCTCAAAGATATTCAACCAATGCAAGAAAGTCTCTCTCCAGCATCTACTTTATCATCTTTATATGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin

Protein Analysis

210

Amino Acids

23.45

Weight (kDa)

6.16

Isoelectric Point (pI)

31.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin PF08613 27 - 162 9.7e-36 Cyclin
Cyclin_N PF00134 69 - 162 1.3e-11 Cyclin, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G21870
fragaria_vesca FvH4_3g46120 FvH4_6g43551
malus_domestica MD09G1104900.v1.1 MD17G1092600.v1.1
prunus_persica Prupe.3G220600_v2.0.a1
pyrus_communis pycom09g02800
rosa_chinensis RchiOBHm_Chr2g0160131
rosa_laevigata RLG00000021198
rosa_multiflora Rmu_sc0002023.1_g000003
rosa_roxburghii Rroxscaffold_2G00090030
rosa_rugosa Rorug02G0481000 Rorug02G0481100
rosa_samantha Rh2BG560300 Rh2BG560400 Rh2CG530700 Rh2CG530800 Rh2DG569100
rosa_wichuraiana Rw2G045240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 103
AciI CCGC 1 cut(s) 9
AcyI GRCGYC 1 cut(s) 552
AdeI CACNNNGTG 1 cut(s) 184
AfaI GTAC 2 cut(s) 236, 278
AfiI CCNNNNNNNGG 3 cut(s) 40, 41, 103
AgeI ACCGGT 1 cut(s) 285
AgsI TTSAA 3 cut(s) 328, 442, 578
AhdI GACNNNNNGTC 1 cut(s) 344
AjiI CACGTC 1 cut(s) 385
AjnI CCWGG 1 cut(s) 304
AluBI AGCT 6 cut(s) 112, 137, 165, 209, 460, 513
AluI AGCT 6 cut(s) 112, 137, 165, 209, 460, 513
Alw21I GWGCWC 1 cut(s) 390
Alw26I GTCTC 3 cut(s) 12, 325, 599
Alw44I GTGCAC 1 cut(s) 386
Ama87I CYCGRG 1 cut(s) 411
ApaLI GTGCAC 1 cut(s) 386
ApeKI GCWGC 3 cut(s) 11, 65, 365
AsiGI ACCGGT 1 cut(s) 285
AspLEI GCGC 1 cut(s) 193
AspS9I GGNCC 2 cut(s) 31, 44
AsuC2I CCSGG 2 cut(s) 35, 251
AsuHPI GGTGA 1 cut(s) 515
AvaI CYCGRG 1 cut(s) 411
AvaII GGWCC 2 cut(s) 31, 44
BaeGI GKGCMC 1 cut(s) 390
BauI CACGAG 1 cut(s) 113
Bbv12I GWGCWC 1 cut(s) 390
BbvI GCAGC 3 cut(s) 23, 77, 352
BccI CCATC 1 cut(s) 97
BceAI ACGGC 2 cut(s) 196, 539
BcgI CGANNNNNNTGC 2 cut(s) 389, 423
BciT130I CCWGG 1 cut(s) 306
BcnI CCSGG 2 cut(s) 35, 251
BcoDI GTCTC 3 cut(s) 12, 325, 599
BfaI CTAG 1 cut(s) 377
BfoI RGCGCY 1 cut(s) 194
BisI GCNGC 3 cut(s) 12, 66, 366
BlpI GCTNAGC 1 cut(s) 138
BlsI GCNGC 3 cut(s) 13, 67, 367
Bme1390I CCNGG 3 cut(s) 35, 251, 306
Bme18I GGWCC 2 cut(s) 31, 44
BmeRI GACNNNNNGTC 1 cut(s) 344
BmeT110I CYCGRG 1 cut(s) 411
BmgBI CACGTC 1 cut(s) 385
BmgT120I GGNCC 2 cut(s) 31, 44
BmiI GGNNCC 2 cut(s) 33, 45
BmrFI CCNGG 3 cut(s) 35, 251, 306
BmsI GCATC 3 cut(s) 310, 528, 614
BpmI CTGGAG 1 cut(s) 585
Bpu1102I GCTNAGC 1 cut(s) 138
BpuEI CTTGAG 1 cut(s) 239
BpuMI CCSGG 2 cut(s) 35, 251
BsaHI GRCGYC 1 cut(s) 552
BsaWI WCCGGW 1 cut(s) 285
Bsc4I CCNNNNNNNGG 3 cut(s) 40, 41, 103
Bse118I RCCGGY 1 cut(s) 285
Bse1I ACTGG 1 cut(s) 33
Bse3DI GCAATG 1 cut(s) 436
BseBI CCWGG 1 cut(s) 306
BseGI GGATG 1 cut(s) 301
BseLI CCNNNNNNNGG 3 cut(s) 40, 41, 103
BseMI GCAATG 1 cut(s) 436
BseNI ACTGG 1 cut(s) 33
BseRI GAGGAG 1 cut(s) 332
BseSI GKGCMC 1 cut(s) 390
BseXI GCAGC 3 cut(s) 23, 77, 352
Bsh1285I CGRYCG 1 cut(s) 39
BshTI ACCGGT 1 cut(s) 285
BsiEI CGRYCG 1 cut(s) 39
BsiHKAI GWGCWC 1 cut(s) 390
BsiHKCI CYCGRG 1 cut(s) 411
BsiSI CCGG 4 cut(s) 15, 35, 251, 286
BslFI GGGAC 1 cut(s) 57
BslI CCNNNNNNNGG 3 cut(s) 40, 41, 103
BsmAI GTCTC 3 cut(s) 12, 325, 599
BsmBI CGTCTC 1 cut(s) 12
BsmFI GGGAC 1 cut(s) 57
BsoBI CYCGRG 1 cut(s) 411
Bsp1286I GDGCHC 1 cut(s) 390
Bsp1407I TGTACA 1 cut(s) 276
Bsp1720I GCTNAGC 1 cut(s) 138
BspACI CCGC 1 cut(s) 9
BspHI TCATGA 1 cut(s) 357
BspLI GGNNCC 2 cut(s) 33, 45
BspQI GCTCTTC 1 cut(s) 155
BsrDI GCAATG 1 cut(s) 436
BsrFI RCCGGY 1 cut(s) 285
BsrGI TGTACA 1 cut(s) 276
BsrI ACTGG 1 cut(s) 33
BssAI RCCGGY 1 cut(s) 285
BssNI GRCGYC 1 cut(s) 552
BssSI CACGAG 1 cut(s) 113
Bst2BI CACGAG 1 cut(s) 113
Bst2UI CCWGG 1 cut(s) 306
Bst4CI ACNGT 1 cut(s) 490
Bst6I CTCTTC 1 cut(s) 155
BstACI GRCGYC 1 cut(s) 552
BstAUI TGTACA 1 cut(s) 276
BstDEI CTNAG 2 cut(s) 138, 147
BstF5I GGATG 1 cut(s) 301
BstH2I RGCGCY 1 cut(s) 194
BstHHI GCGC 1 cut(s) 193
BstMAI GTCTC 3 cut(s) 12, 325, 599
BstMCI CGRYCG 1 cut(s) 39
BstMWI GCNNNNNNNGC 1 cut(s) 62
BstNI CCWGG 1 cut(s) 306
BstNSI RCATGY 1 cut(s) 258
BstSCI CCNGG 3 cut(s) 33, 249, 304
BstSLI GKGCMC 1 cut(s) 390
BstV1I GCAGC 3 cut(s) 23, 77, 352
BtrI CACGTC 1 cut(s) 385
BtsCI GGATG 1 cut(s) 301
CciI TCATGA 1 cut(s) 357
CfoI GCGC 1 cut(s) 193
Cfr10I RCCGGY 1 cut(s) 285
Cfr13I GGNCC 2 cut(s) 31, 44
CseI GACGC 1 cut(s) 560
Csp6I GTAC 2 cut(s) 235, 277
CspAI ACCGGT 1 cut(s) 285
CviAII CATG 3 cut(s) 98, 255, 358
CviQI GTAC 2 cut(s) 235, 277
DdeI CTNAG 2 cut(s) 138, 147
DraIII CACNNNGTG 1 cut(s) 184
DriI GACNNNNNGTC 1 cut(s) 344
Eam1104I CTCTTC 1 cut(s) 155
Eam1105I GACNNNNNGTC 1 cut(s) 344
EarI CTCTTC 1 cut(s) 155
Eco47I GGWCC 2 cut(s) 31, 44
Eco88I CYCGRG 1 cut(s) 411
EcoRII CCWGG 1 cut(s) 304
Esp3I CGTCTC 1 cut(s) 12
FaeI CATG 3 cut(s) 101, 258, 361
FaqI GGGAC 1 cut(s) 57
FatI CATG 3 cut(s) 97, 254, 357
Fnu4HI GCNGC 3 cut(s) 12, 66, 366
FokI GGATG 1 cut(s) 288
Fsp4HI GCNGC 3 cut(s) 12, 66, 366
FspBI CTAG 1 cut(s) 377
GlaI GCGC 1 cut(s) 192
GluI GCNGC 3 cut(s) 12, 66, 366
GsuI CTGGAG 1 cut(s) 585
HaeII RGCGCY 1 cut(s) 194
HapII CCGG 4 cut(s) 15, 35, 251, 286
HgaI GACGC 1 cut(s) 560
HhaI GCGC 1 cut(s) 193
Hin1I GRCGYC 1 cut(s) 552
Hin1II CATG 3 cut(s) 101, 258, 361
Hin6I GCGC 1 cut(s) 191
HinP1I GCGC 1 cut(s) 191
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 2 cut(s) 50, 339
HpaI GTTAAC 1 cut(s) 6
HpaII CCGG 4 cut(s) 15, 35, 251, 286
HphI GGTGA 1 cut(s) 515
Hpy166II GTNNAC 4 cut(s) 6, 237, 277, 388
Hpy188III TCNNGA 3 cut(s) 358, 473, 508
Hpy8I GTNNAC 4 cut(s) 6, 237, 277, 388
Hpy99I CGWCG 1 cut(s) 554
HpyCH4III ACNGT 1 cut(s) 490
HpyCH4IV ACGT 1 cut(s) 384
HpyCH4V TGCA 4 cut(s) 388, 434, 541, 586
HpyF10VI GCNNNNNNNGC 1 cut(s) 62
HpyF3I CTNAG 2 cut(s) 138, 147
HpySE526I ACGT 1 cut(s) 384
Hsp92I GRCGYC 1 cut(s) 552
Hsp92II CATG 3 cut(s) 101, 258, 361
HspAI GCGC 1 cut(s) 191
KspAI GTTAAC 1 cut(s) 6
LguI GCTCTTC 1 cut(s) 155
LmnI GCTCC 1 cut(s) 457
LpnPI CCDG 9 cut(s) 14, 28, 48, 60, 264, 291, 299, 318, 615
Lsp1109I GCAGC 3 cut(s) 23, 77, 352
LweI GCATC 3 cut(s) 310, 528, 614
MaeI CTAG 1 cut(s) 377
MaeII ACGT 1 cut(s) 384
MaeIII GTNAC 2 cut(s) 346, 484
MboII GAAGA 3 cut(s) 172, 461, 552
MhlI GDGCHC 1 cut(s) 390
MlyI GAGTC 1 cut(s) 333
MmeI TCCRAC 2 cut(s) 397, 435
MnlI CCTC 6 cut(s) 163, 216, 353, 413, 536, 575
MseI TTAA 1 cut(s) 5
MspI CCGG 4 cut(s) 15, 35, 251, 286
MspR9I CCNGG 3 cut(s) 35, 251, 306
MvaI CCWGG 1 cut(s) 306
MwoI GCNNNNNNNGC 1 cut(s) 62
NciI CCSGG 2 cut(s) 35, 251
NlaIII CATG 3 cut(s) 101, 258, 361
NlaIV GGNNCC 2 cut(s) 33, 45
NmeAIII GCCGAG 1 cut(s) 219
NmuCI GTSAC 1 cut(s) 346
NspI RCATGY 1 cut(s) 258
PagI TCATGA 1 cut(s) 357
PciSI GCTCTTC 1 cut(s) 155
PfeI GAWTC 1 cut(s) 50
PflFI GACNNNGTC 1 cut(s) 35
PflMI CCANNNNNTGG 1 cut(s) 103
PinAI ACCGGT 1 cut(s) 285
PkrI GCNGC 3 cut(s) 13, 67, 367
PleI GAGTC 1 cut(s) 333
PpsI GAGTC 1 cut(s) 333
Psp6I CCWGG 1 cut(s) 304
PspGI CCWGG 1 cut(s) 304
PspN4I GGNNCC 2 cut(s) 33, 45
PspPI GGNCC 2 cut(s) 31, 44
PsyI GACNNNGTC 1 cut(s) 35
RsaI GTAC 2 cut(s) 236, 278
RsaNI GTAC 2 cut(s) 235, 277
SapI GCTCTTC 1 cut(s) 155
SaqAI TTAA 1 cut(s) 5
SatI GCNGC 3 cut(s) 12, 66, 366
Sau96I GGNCC 2 cut(s) 31, 44
SchI GAGTC 1 cut(s) 333
ScrFI CCNGG 3 cut(s) 35, 251, 306
SduI GDGCHC 1 cut(s) 390
SetI ASST 9 cut(s) 114, 139, 167, 211, 219, 387, 462, 515, 528
SfaNI GCATC 3 cut(s) 310, 528, 614
SinI GGWCC 2 cut(s) 31, 44
SmlI CTYRAG 1 cut(s) 218
SmoI CTYRAG 1 cut(s) 218
SsiI CCGC 1 cut(s) 9
SspMI CTAG 1 cut(s) 377
StyD4I CCNGG 3 cut(s) 33, 249, 304
TaaI ACNGT 1 cut(s) 490
TaiI ACGT 1 cut(s) 387
TaqI TCGA 2 cut(s) 507, 528
TatI WGTACW 2 cut(s) 234, 276
TfiI GAWTC 1 cut(s) 50
Tru1I TTAA 1 cut(s) 5
Tru9I TTAA 1 cut(s) 5
TseFI GTSAC 1 cut(s) 346
TseI GCWGC 3 cut(s) 11, 65, 365
Tsp45I GTSAC 1 cut(s) 346
TspDTI ATGAA 2 cut(s) 39, 323
TspGWI ACGGA 1 cut(s) 74
Tth111I GACNNNGTC 1 cut(s) 35
Van91I CCANNNNNTGG 1 cut(s) 103
VneI GTGCAC 1 cut(s) 386
VpaK11BI GGWCC 2 cut(s) 31, 44
XceI RCATGY 1 cut(s) 258
XspI CTAG 1 cut(s) 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.