pycom09g02800

Cyclin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0012469
Physical Location & Seq
Forward (+)
2058766 .. 2059775
1010 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g02800.2

Sequence Viewer

Length: 714 bp
ATGTTAGCCGCCGGCGATTTCACCGACCGCCATAGCCGGCCGGATCCAAGCATCCCGAGAGTGTTAACCCTACTCTCTTTTGTTCTTGAAAAACTGGTGGCTCGAAATAACACGCTCGCAGATGACCTGAGTCAACAAATCAATGGGCTGAGCTGTGGCTCGGCGGGGATTGGGAAGAGCTTCGATGTGTTTCACGGCATGAGGCGGCCGAGCATAAGCATACCCAATTACTTGGAGAGACTGTACAAGTACACAGATTGCAGTCCATCATGTTTTGTGGTTGGATATGTGTATATAGATAGGCTGCTTCATAAGCACCCTGACTCTCTTGTGTTGTCCTTGAACGTGCATAGGCTGCTGGTCACAAGCGTTATGGTTGCTTCTAAGATGCTCGATGATGTGCACTACAACAATGCGTTTTACGCCCGCGTCGGAGGAGTGAGCAATGCCGAACTAAACAAACTAGAACTGGAGTTGCTTTTCCTGTTGGATTTCGGGGTCACGGTGAGCTCTAGGGATTTCGAGAGCTATTGCTTCCACTTGGAGAGAGAAAACTTGCAGAACGGGGCATGCCGAAGGATTGAAAGGCCATTGTTAGTCCTCAACGGTGTGGATGATGTGCCTGAAATACCAGAAAATGCAGAGAGTAATTCCTTACCACCTCGGATATCAGAAGCTACCCTGAGTTCCTCACTTCCTCAGATTGTGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin

Protein Analysis

238

Amino Acids

26.44

Weight (kDa)

5.49

Isoelectric Point (pI)

42.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G21870
fragaria_vesca FvH4_3g46120 FvH4_6g43551
malus_domestica MD09G1104900.v1.1 MD17G1092600.v1.1
prunus_persica Prupe.3G220600_v2.0.a1
pyrus_communis pycom09g02800
rosa_chinensis RchiOBHm_Chr2g0160131
rosa_laevigata RLG00000021198
rosa_multiflora Rmu_sc0002023.1_g000003
rosa_roxburghii Rroxscaffold_2G00090030
rosa_rugosa Rorug02G0481000 Rorug02G0481100
rosa_samantha Rh2BG560300 Rh2BG560400 Rh2CG530700 Rh2CG530800 Rh2DG569100
rosa_wichuraiana Rw2G045240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 429
AciI CCGC 5 cut(s) 9, 28, 164, 205, 427
AclWI GGATC 2 cut(s) 38, 51
AcoI YGGCCR 2 cut(s) 38, 206
AfaI GTAC 2 cut(s) 245, 251
AgsI TTSAA 3 cut(s) 89, 343, 584
AluBI AGCT 5 cut(s) 153, 180, 510, 528, 677
AluI AGCT 5 cut(s) 153, 180, 510, 528, 677
Alw21I GWGCWC 2 cut(s) 405, 512
Alw26I GTCTC 1 cut(s) 232
Alw44I GTGCAC 1 cut(s) 401
AlwI GGATC 2 cut(s) 38, 51
Ama87I CYCGRG 1 cut(s) 55
AoxI GGCC 3 cut(s) 38, 206, 587
ApaLI GTGCAC 1 cut(s) 401
ApeKI GCWGC 2 cut(s) 304, 355
Asp700I GAANNNNTTC 1 cut(s) 179
AsuHPI GGTGA 2 cut(s) 13, 517
AvaI CYCGRG 1 cut(s) 55
BaeGI GKGCMC 1 cut(s) 405
BamHI GGATCC 1 cut(s) 43
BanII GRGCYC 1 cut(s) 512
Bbv12I GWGCWC 2 cut(s) 405, 512
BbvI GCAGC 2 cut(s) 291, 342
BccI CCATC 1 cut(s) 274
BceAI ACGGC 1 cut(s) 211
BcoDI GTCTC 1 cut(s) 232
BfaI CTAG 2 cut(s) 464, 513
BisI GCNGC 4 cut(s) 9, 206, 305, 356
BlpI GCTNAGC 1 cut(s) 149
BlsI GCNGC 4 cut(s) 10, 207, 306, 357
BmeT110I CYCGRG 1 cut(s) 55
BmiI GGNNCC 1 cut(s) 45
BmsI GCATC 2 cut(s) 60, 378
BoxI GACNNNNGTC 1 cut(s) 129
BpmI CTGGAG 1 cut(s) 491
Bpu1102I GCTNAGC 1 cut(s) 149
BsaJI CCNNGG 1 cut(s) 662
BsaXI ACNNNNNCTCC 2 cut(s) 227, 257
Bse118I RCCGGY 2 cut(s) 11, 36
Bse1I ACTGG 2 cut(s) 99, 474
Bse3DI GCAATG 1 cut(s) 451
BseDI CCNNGG 1 cut(s) 662
BseGI GGATG 2 cut(s) 51, 619
BseMI GCAATG 1 cut(s) 451
BseMII CTCAG 4 cut(s) 119, 140, 674, 713
BseNI ACTGG 2 cut(s) 99, 474
BseRI GAGGAG 1 cut(s) 450
BseSI GKGCMC 1 cut(s) 405
BseX3I CGGCCG 2 cut(s) 38, 206
BseXI GCAGC 2 cut(s) 291, 342
Bsh1236I CGCG 1 cut(s) 429
Bsh1285I CGRYCG 3 cut(s) 28, 41, 209
BshFI GGCC 3 cut(s) 40, 208, 589
BsiEI CGRYCG 3 cut(s) 28, 41, 209
BsiHKAI GWGCWC 2 cut(s) 405, 512
BsiHKCI CYCGRG 1 cut(s) 55
BsiSI CCGG 3 cut(s) 12, 37, 41
BsmAI GTCTC 1 cut(s) 232
BsnI GGCC 3 cut(s) 40, 208, 589
BsoBI CYCGRG 1 cut(s) 55
Bsp1286I GDGCHC 2 cut(s) 405, 512
Bsp1407I TGTACA 1 cut(s) 243
Bsp143I GATC 1 cut(s) 43
Bsp1720I GCTNAGC 1 cut(s) 149
BspACI CCGC 5 cut(s) 9, 28, 164, 205, 427
BspANI GGCC 3 cut(s) 40, 208, 589
BspCNI CTCAG 4 cut(s) 120, 141, 675, 712
BspFNI CGCG 1 cut(s) 429
BspLI GGNNCC 1 cut(s) 45
BspPI GGATC 2 cut(s) 38, 51
BspQI GCTCTTC 1 cut(s) 170
BsrDI GCAATG 1 cut(s) 451
BsrFI RCCGGY 2 cut(s) 11, 36
BsrGI TGTACA 1 cut(s) 243
BsrI ACTGG 2 cut(s) 99, 474
BssAI RCCGGY 2 cut(s) 11, 36
BssECI CCNNGG 1 cut(s) 662
BssMI GATC 1 cut(s) 43
Bst4CI ACNGT 3 cut(s) 243, 505, 608
Bst6I CTCTTC 1 cut(s) 170
BstAPI GCANNNNNTGC 1 cut(s) 355
BstAUI TGTACA 1 cut(s) 243
BstC8I GCNNGC 5 cut(s) 13, 38, 117, 427, 571
BstDEI CTNAG 5 cut(s) 128, 149, 384, 683, 699
BstF5I GGATG 2 cut(s) 51, 619
BstFNI CGCG 1 cut(s) 429
BstKTI GATC 1 cut(s) 46
BstMAI GTCTC 1 cut(s) 232
BstMBI GATC 1 cut(s) 43
BstMCI CGRYCG 3 cut(s) 28, 41, 209
BstMWI GCNNNNNNNGC 3 cut(s) 313, 355, 422
BstNSI RCATGY 1 cut(s) 573
BstPAI GACNNNNGTC 1 cut(s) 129
BstSLI GKGCMC 1 cut(s) 405
BstUI CGCG 1 cut(s) 429
BstV1I GCAGC 2 cut(s) 291, 342
BstX2I RGATCY 1 cut(s) 43
BstXI CCANNNNNNTGG 1 cut(s) 232
BstYI RGATCY 1 cut(s) 43
BstZI CGGCCG 2 cut(s) 38, 206
BsuRI GGCC 3 cut(s) 40, 208, 589
BtsCI GGATG 2 cut(s) 51, 619
Cac8I GCNNGC 5 cut(s) 13, 38, 117, 427, 571
Cfr10I RCCGGY 2 cut(s) 11, 36
CseI GACGC 1 cut(s) 418
Csp6I GTAC 2 cut(s) 244, 250
CviAII CATG 3 cut(s) 199, 270, 570
CviQI GTAC 2 cut(s) 244, 250
DdeI CTNAG 5 cut(s) 128, 149, 384, 683, 699
DpnI GATC 1 cut(s) 45
DpnII GATC 1 cut(s) 43
EaeI YGGCCR 2 cut(s) 38, 206
EagI CGGCCG 2 cut(s) 38, 206
Eam1104I CTCTTC 1 cut(s) 170
EarI CTCTTC 1 cut(s) 170
Ecl136II GAGCTC 1 cut(s) 510
EclXI CGGCCG 2 cut(s) 38, 206
Eco24I GRGCYC 1 cut(s) 512
Eco32I GATATC 1 cut(s) 669
Eco52I CGGCCG 2 cut(s) 38, 206
Eco53kI GAGCTC 1 cut(s) 510
Eco88I CYCGRG 1 cut(s) 55
EcoICRI GAGCTC 1 cut(s) 510
EcoRV GATATC 1 cut(s) 669
EcoT38I GRGCYC 1 cut(s) 512
FaeI CATG 3 cut(s) 202, 273, 573
FatI CATG 3 cut(s) 198, 269, 569
FauI CCCGC 2 cut(s) 157, 434
Fnu4HI GCNGC 4 cut(s) 9, 206, 305, 356
FokI GGATG 2 cut(s) 38, 626
FriOI GRGCYC 1 cut(s) 512
Fsp4HI GCNGC 4 cut(s) 9, 206, 305, 356
FspBI CTAG 2 cut(s) 464, 513
GluI GCNGC 4 cut(s) 9, 206, 305, 356
GsuI CTGGAG 1 cut(s) 491
HaeIII GGCC 3 cut(s) 40, 208, 589
HapII CCGG 3 cut(s) 12, 37, 41
HgaI GACGC 1 cut(s) 418
Hin1II CATG 3 cut(s) 202, 273, 573
HincII GTYRAC 2 cut(s) 66, 134
HindII GTYRAC 2 cut(s) 66, 134
HinfI GANTC 2 cut(s) 130, 323
HpaI GTTAAC 1 cut(s) 66
HpaII CCGG 3 cut(s) 12, 37, 41
HphI GGTGA 2 cut(s) 13, 517
Hpy166II GTNNAC 5 cut(s) 66, 134, 252, 403, 709
Hpy188I TCNGA 4 cut(s) 434, 666, 673, 702
Hpy188III TCNNGA 3 cut(s) 55, 86, 523
Hpy8I GTNNAC 5 cut(s) 66, 134, 252, 403, 709
Hpy99I CGWCG 1 cut(s) 434
HpyAV CCTTC 1 cut(s) 570
HpyCH4III ACNGT 3 cut(s) 243, 505, 608
HpyCH4IV ACGT 1 cut(s) 345
HpyCH4V TGCA 5 cut(s) 261, 349, 403, 559, 641
HpyF10VI GCNNNNNNNGC 3 cut(s) 313, 355, 422
HpyF3I CTNAG 5 cut(s) 128, 149, 384, 683, 699
HpySE526I ACGT 1 cut(s) 345
Hsp92II CATG 3 cut(s) 202, 273, 573
KroI GCCGGC 2 cut(s) 11, 36
KroNI GCCGGC 2 cut(s) 13, 38
KspAI GTTAAC 1 cut(s) 66
Kzo9I GATC 1 cut(s) 43
LguI GCTCTTC 1 cut(s) 170
Lsp1109I GCAGC 2 cut(s) 291, 342
LweI GCATC 2 cut(s) 60, 378
MaeI CTAG 2 cut(s) 464, 513
MaeII ACGT 1 cut(s) 345
MaeIII GTNAC 2 cut(s) 361, 499
MalI GATC 1 cut(s) 45
MboI GATC 1 cut(s) 43
MboII GAAGA 1 cut(s) 187
MflI RGATCY 1 cut(s) 43
MhlI GDGCHC 2 cut(s) 405, 512
MluCI AATT 2 cut(s) 226, 649
MlyI GAGTC 2 cut(s) 139, 317
MmeI TCCRAC 3 cut(s) 262, 412, 468
MnlI CCTC 6 cut(s) 195, 428, 611, 672, 700, 708
MreI CGCCGGCG 1 cut(s) 11
MroNI GCCGGC 2 cut(s) 11, 36
MroXI GAANNNNTTC 1 cut(s) 179
MseI TTAA 1 cut(s) 65
MspI CCGG 3 cut(s) 12, 37, 41
MvnI CGCG 1 cut(s) 429
MwoI GCNNNNNNNGC 3 cut(s) 313, 355, 422
NaeI GCCGGC 2 cut(s) 13, 38
NdeII GATC 1 cut(s) 43
NgoMIV GCCGGC 2 cut(s) 11, 36
NlaIII CATG 3 cut(s) 202, 273, 573
NlaIV GGNNCC 1 cut(s) 45
NmeAIII GCCGAG 2 cut(s) 140, 234
NmuCI GTSAC 2 cut(s) 361, 499
NspI RCATGY 1 cut(s) 573
PaeI GCATGC 1 cut(s) 573
PciSI GCTCTTC 1 cut(s) 170
PdiI GCCGGC 2 cut(s) 13, 38
PdmI GAANNNNTTC 1 cut(s) 179
PkrI GCNGC 4 cut(s) 10, 207, 306, 357
PleI GAGTC 2 cut(s) 138, 317
PpsI GAGTC 2 cut(s) 138, 317
PshAI GACNNNNGTC 1 cut(s) 129
Psp124BI GAGCTC 1 cut(s) 512
PspN4I GGNNCC 1 cut(s) 45
PsuI RGATCY 1 cut(s) 43
RsaI GTAC 2 cut(s) 245, 251
RsaNI GTAC 2 cut(s) 244, 250
SacI GAGCTC 1 cut(s) 512
SapI GCTCTTC 1 cut(s) 170
SaqAI TTAA 1 cut(s) 65
SatI GCNGC 4 cut(s) 9, 206, 305, 356
Sau3AI GATC 1 cut(s) 43
SchI GAGTC 2 cut(s) 139, 317
SduI GDGCHC 2 cut(s) 405, 512
SetI ASST 8 cut(s) 129, 155, 182, 348, 512, 530, 664, 679
SfaNI GCATC 2 cut(s) 60, 378
SgrAI CRCCGGYG 1 cut(s) 11
SphI GCATGC 1 cut(s) 573
Sse9I AATT 2 cut(s) 226, 649
SsiI CCGC 5 cut(s) 9, 28, 164, 205, 427
SspMI CTAG 2 cut(s) 464, 513
SstI GAGCTC 1 cut(s) 512
TaaI ACNGT 3 cut(s) 243, 505, 608
TaiI ACGT 1 cut(s) 348
TaqI TCGA 4 cut(s) 103, 183, 393, 522
TasI AATT 2 cut(s) 226, 649
TatI WGTACW 2 cut(s) 243, 249
TauI GCSGC 2 cut(s) 11, 208
Tru1I TTAA 1 cut(s) 65
Tru9I TTAA 1 cut(s) 65
TseFI GTSAC 2 cut(s) 361, 499
TseI GCWGC 2 cut(s) 304, 355
Tsp45I GTSAC 2 cut(s) 361, 499
TspDTI ATGAA 1 cut(s) 299
VneI GTGCAC 1 cut(s) 401
XceI RCATGY 1 cut(s) 573
XmnI GAANNNNTTC 1 cut(s) 179
XspI CTAG 2 cut(s) 464, 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.