MD17G1092600.v1.1

Cyclin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0012469
Physical Location & Seq
Forward (+)
7776186 .. 7776473
288 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1092600.v1.1.491

Sequence Viewer

Length: 288 bp
ATGTTAGCGGCCGGCGAGTTCACCGACCGCCATAGCCGGCTGGAGCCGTGCATCCCCAGAGTGTTAACCATACTCTCTTTCGTACTAGAGAAATTGGTGGCTCGAAATAACACGCTTGTAGATGACCTGAACCATCAGCTTAGTGGGATAAGTTGTGGCTCGGCAGTGATTGGAAAGAGCTTGGATGCGTTTCACGGAGTGAGGCCACCGAGGATAAGCATACGGAAGTACTTGGAGAGGCTGTACAAGTACACAGATTGCAGCCCGTCATGCTTTGTTGTTGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin

Protein Analysis

96

Amino Acids

10.58

Weight (kDa)

8.82

Isoelectric Point (pI)

24.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin PF08613 21 - 94 1.2e-06 Cyclin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G21870
fragaria_vesca FvH4_3g46120 FvH4_6g43551
malus_domestica MD09G1104900.v1.1 MD17G1092600.v1.1
prunus_persica Prupe.3G220600_v2.0.a1
pyrus_communis pycom09g02800
rosa_chinensis RchiOBHm_Chr2g0160131
rosa_laevigata RLG00000021198
rosa_multiflora Rmu_sc0002023.1_g000003
rosa_roxburghii Rroxscaffold_2G00090030
rosa_rugosa Rorug02G0481000 Rorug02G0481100
rosa_samantha Rh2BG560300 Rh2BG560400 Rh2CG530700 Rh2CG530800 Rh2DG569100
rosa_wichuraiana Rw2G045240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 8, 28
AcoI YGGCCR 1 cut(s) 9
AdeI CACNNNGTG 1 cut(s) 199
AfaI GTAC 4 cut(s) 84, 230, 245, 251
AluBI AGCT 2 cut(s) 139, 180
AluI AGCT 2 cut(s) 139, 180
AoxI GGCC 2 cut(s) 9, 203
ApeKI GCWGC 1 cut(s) 261
AsuHPI GGTGA 1 cut(s) 13
BbvI GCAGC 1 cut(s) 273
BccI CCATC 1 cut(s) 141
BceAI ACGGC 1 cut(s) 31
BfaI CTAG 1 cut(s) 86
BisI GCNGC 2 cut(s) 9, 262
BlsI GCNGC 2 cut(s) 10, 263
BmcAI AGTACT 1 cut(s) 230
BmiI GGNNCC 1 cut(s) 45
BmsI GCATC 2 cut(s) 60, 175
BpmI CTGGAG 1 cut(s) 62
BsaJI CCNNGG 1 cut(s) 209
BsaXI ACNNNNNCTCC 2 cut(s) 227, 257
Bse118I RCCGGY 2 cut(s) 11, 36
BseDI CCNNGG 1 cut(s) 209
BseGI GGATG 2 cut(s) 51, 190
BseX3I CGGCCG 1 cut(s) 9
BseXI GCAGC 1 cut(s) 273
Bsh1285I CGRYCG 2 cut(s) 12, 28
BshFI GGCC 2 cut(s) 11, 205
BsiEI CGRYCG 2 cut(s) 12, 28
BsiSI CCGG 2 cut(s) 12, 37
BsnI GGCC 2 cut(s) 11, 205
Bsp1407I TGTACA 1 cut(s) 243
BspACI CCGC 2 cut(s) 8, 28
BspANI GGCC 2 cut(s) 11, 205
BspLI GGNNCC 1 cut(s) 45
BsrFI RCCGGY 2 cut(s) 11, 36
BsrGI TGTACA 1 cut(s) 243
BssAI RCCGGY 2 cut(s) 11, 36
BssECI CCNNGG 1 cut(s) 209
BstAUI TGTACA 1 cut(s) 243
BstC8I GCNNGC 2 cut(s) 13, 38
BstDEI CTNAG 1 cut(s) 140
BstF5I GGATG 2 cut(s) 51, 190
BstMCI CGRYCG 2 cut(s) 12, 28
BstMWI GCNNNNNNNGC 1 cut(s) 270
BstV1I GCAGC 1 cut(s) 273
BstZI CGGCCG 1 cut(s) 9
BsuRI GGCC 2 cut(s) 11, 205
BtsCI GGATG 2 cut(s) 51, 190
BtsI GCAGTG 1 cut(s) 171
BtsIMutI CAGTG 1 cut(s) 171
Cac8I GCNNGC 2 cut(s) 13, 38
Cfr10I RCCGGY 2 cut(s) 11, 36
Csp6I GTAC 4 cut(s) 83, 229, 244, 250
CviAII CATG 1 cut(s) 270
CviQI GTAC 4 cut(s) 83, 229, 244, 250
DdeI CTNAG 1 cut(s) 140
DraIII CACNNNGTG 1 cut(s) 199
EaeI YGGCCR 1 cut(s) 9
EagI CGGCCG 1 cut(s) 9
EclXI CGGCCG 1 cut(s) 9
Eco52I CGGCCG 1 cut(s) 9
FaeI CATG 1 cut(s) 273
FaiI YATR 4 cut(s) 33, 71, 221, 271
FatI CATG 1 cut(s) 269
Fnu4HI GCNGC 2 cut(s) 9, 262
FokI GGATG 2 cut(s) 38, 197
Fsp4HI GCNGC 2 cut(s) 9, 262
FspBI CTAG 1 cut(s) 86
GluI GCNGC 2 cut(s) 9, 262
GsuI CTGGAG 1 cut(s) 62
HaeIII GGCC 2 cut(s) 11, 205
HapII CCGG 2 cut(s) 12, 37
Hin1II CATG 1 cut(s) 273
HincII GTYRAC 1 cut(s) 66
HindII GTYRAC 1 cut(s) 66
HpaI GTTAAC 1 cut(s) 66
HpaII CCGG 2 cut(s) 12, 37
HphI GGTGA 1 cut(s) 13
Hpy166II GTNNAC 3 cut(s) 21, 66, 252
Hpy8I GTNNAC 3 cut(s) 21, 66, 252
HpyCH4V TGCA 2 cut(s) 51, 261
HpyF10VI GCNNNNNNNGC 1 cut(s) 270
HpyF3I CTNAG 1 cut(s) 140
Hsp92II CATG 1 cut(s) 273
KroI GCCGGC 2 cut(s) 11, 36
KroNI GCCGGC 2 cut(s) 13, 38
KspAI GTTAAC 1 cut(s) 66
LmnI GCTCC 1 cut(s) 43
LpnPI CCDG 5 cut(s) 25, 26, 50, 70, 140
Lsp1109I GCAGC 1 cut(s) 273
LweI GCATC 2 cut(s) 60, 175
MaeI CTAG 1 cut(s) 86
MluCI AATT 1 cut(s) 92
MmeI TCCRAC 1 cut(s) 262
MnlI CCTC 3 cut(s) 195, 204, 231
MroNI GCCGGC 2 cut(s) 11, 36
MseI TTAA 1 cut(s) 65
MspI CCGG 2 cut(s) 12, 37
MwoI GCNNNNNNNGC 1 cut(s) 270
NaeI GCCGGC 2 cut(s) 13, 38
NgoMIV GCCGGC 2 cut(s) 11, 36
NlaIII CATG 1 cut(s) 273
NlaIV GGNNCC 1 cut(s) 45
NmeAIII GCCGAG 1 cut(s) 140
PdiI GCCGGC 2 cut(s) 13, 38
PkrI GCNGC 2 cut(s) 10, 263
PspN4I GGNNCC 1 cut(s) 45
RsaI GTAC 4 cut(s) 84, 230, 245, 251
RsaNI GTAC 4 cut(s) 83, 229, 244, 250
SaqAI TTAA 1 cut(s) 65
SatI GCNGC 2 cut(s) 9, 262
ScaI AGTACT 1 cut(s) 230
SetI ASST 3 cut(s) 129, 141, 182
SfaNI GCATC 2 cut(s) 60, 175
Sse9I AATT 1 cut(s) 92
SsiI CCGC 2 cut(s) 8, 28
SspMI CTAG 1 cut(s) 86
TaqI TCGA 1 cut(s) 103
TasI AATT 1 cut(s) 92
TatI WGTACW 3 cut(s) 228, 243, 249
TauI GCSGC 1 cut(s) 11
Tru1I TTAA 1 cut(s) 65
Tru9I TTAA 1 cut(s) 65
TscAI CASTG 1 cut(s) 171
TseI GCWGC 1 cut(s) 261
TspGWI ACGGA 2 cut(s) 210, 238
TspRI CASTG 1 cut(s) 171
XcmI CCANNNNNNNNNTGG 1 cut(s) 140
XspI CTAG 1 cut(s) 86
ZrmI AGTACT 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.