Rh2BG560300

Cyclin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0012469
Physical Location & Seq
Reverse (-)
77087095 .. 77087406
312 bp
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UTR
Exon/CDS
Intron
Rh2BG560300.1

Sequence Viewer

Length: 312 bp
ATGTTTGTTCTCTGGTTACAAAAATGGATATGCAGGCATTATAACAATGCATTTTATGCCAAGGTTGGGGGAGTAAGCAATGCTGAACTGAACAGACTAGAAGTGGAGTTTCTTTTCCTGCTGGATTTTGGAGTCACAGTGAGTTCCAGAATCTTTGAGAGTTATTGCTTTCACTTGGAAAAAGAAATGATGCTGAATGGGGCATGCCAAACAATAGAAAGGGCTCTAGTCCCCATTACTGATGTGGCTGATGTGCCCGGAATTACTGAAAATACTCAGAGTTCCTCATCAGTACCTCATAATCATGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin

Protein Analysis

103

Amino Acids

11.68

Weight (kDa)

5.43

Isoelectric Point (pI)

52.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin PF08613 13 - 44 2.2e-10 Cyclin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G21870
fragaria_vesca FvH4_3g46120 FvH4_6g43551
malus_domestica MD09G1104900.v1.1 MD17G1092600.v1.1
prunus_persica Prupe.3G220600_v2.0.a1
pyrus_communis pycom09g02800
rosa_chinensis RchiOBHm_Chr2g0160131
rosa_laevigata RLG00000021198
rosa_multiflora Rmu_sc0002023.1_g000003
rosa_roxburghii Rroxscaffold_2G00090030
rosa_rugosa Rorug02G0481000 Rorug02G0481100
rosa_samantha Rh2BG560300 Rh2BG560400 Rh2CG530700 Rh2CG530800 Rh2DG569100
rosa_wichuraiana Rw2G045240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 42
AfaI GTAC 1 cut(s) 294
AfiI CCNNNNNNNGG 1 cut(s) 66
AsuC2I CCSGG 1 cut(s) 258
BaeGI GKGCMC 1 cut(s) 258
BanII GRGCYC 1 cut(s) 226
BcnI CCSGG 1 cut(s) 258
BfaI CTAG 2 cut(s) 98, 227
Bme1390I CCNGG 1 cut(s) 258
BmrFI CCNGG 1 cut(s) 258
BmsI GCATC 1 cut(s) 180
BpuMI CCSGG 1 cut(s) 258
BsaJI CCNNGG 1 cut(s) 60
BsaXI ACNNNNNCTCC 2 cut(s) 123, 153
Bsc4I CCNNNNNNNGG 1 cut(s) 66
Bse3DI GCAATG 1 cut(s) 85
BseDI CCNNGG 1 cut(s) 60
BseLI CCNNNNNNNGG 1 cut(s) 66
BseMI GCAATG 1 cut(s) 85
BseMII CTCAG 1 cut(s) 290
BseSI GKGCMC 1 cut(s) 258
BsiSI CCGG 1 cut(s) 258
BslFI GGGAC 1 cut(s) 215
BslI CCNNNNNNNGG 1 cut(s) 66
BsmFI GGGAC 1 cut(s) 215
Bsp1286I GDGCHC 2 cut(s) 226, 258
BspCNI CTCAG 1 cut(s) 289
BsrDI GCAATG 1 cut(s) 85
BssECI CCNNGG 1 cut(s) 60
BssT1I CCWWGG 1 cut(s) 60
Bst4CI ACNGT 1 cut(s) 139
BstAPI GCANNNNNTGC 1 cut(s) 56
BstC8I GCNNGC 2 cut(s) 35, 205
BstDEI CTNAG 1 cut(s) 276
BstMWI GCNNNNNNNGC 1 cut(s) 56
BstNSI RCATGY 1 cut(s) 207
BstSCI CCNGG 1 cut(s) 256
BstSLI GKGCMC 1 cut(s) 258
BtsIMutI CAGTG 1 cut(s) 144
Cac8I GCNNGC 2 cut(s) 35, 205
Csp6I GTAC 1 cut(s) 293
CviAII CATG 2 cut(s) 204, 305
CviJI RGCY 2 cut(s) 224, 248
CviKI_1 RGCY 2 cut(s) 224, 248
CviQI GTAC 1 cut(s) 293
DdeI CTNAG 1 cut(s) 276
Eco130I CCWWGG 1 cut(s) 60
Eco24I GRGCYC 1 cut(s) 226
EcoT14I CCWWGG 1 cut(s) 60
EcoT22I ATGCAT 1 cut(s) 52
EcoT38I GRGCYC 1 cut(s) 226
ErhI CCWWGG 1 cut(s) 60
FaeI CATG 2 cut(s) 207, 308
FaiI YATR 6 cut(s) 31, 42, 57, 205, 300, 306
FaqI GGGAC 1 cut(s) 215
FatI CATG 2 cut(s) 203, 304
FriOI GRGCYC 1 cut(s) 226
FspBI CTAG 2 cut(s) 98, 227
HapII CCGG 1 cut(s) 258
Hin1II CATG 2 cut(s) 207, 308
HinfI GANTC 2 cut(s) 132, 150
HpaII CCGG 1 cut(s) 258
Hpy188I TCNGA 1 cut(s) 279
Hpy188III TCNNGA 1 cut(s) 147
HpyCH4III ACNGT 1 cut(s) 139
HpyCH4V TGCA 2 cut(s) 33, 50
HpyF10VI GCNNNNNNNGC 1 cut(s) 56
HpyF3I CTNAG 1 cut(s) 276
Hsp92II CATG 2 cut(s) 207, 308
LpnPI CCDG 5 cut(s) 19, 107, 131, 160, 271
LweI GCATC 1 cut(s) 180
MaeI CTAG 2 cut(s) 98, 227
MaeIII GTNAC 2 cut(s) 15, 133
MhlI GDGCHC 2 cut(s) 226, 258
MluCI AATT 1 cut(s) 261
MlyI GAGTC 1 cut(s) 141
MnlI CCTC 2 cut(s) 295, 306
Mph1103I ATGCAT 1 cut(s) 52
MseI TTAA 1 cut(s) 310
MslI CAYNNNNRTG 1 cut(s) 303
MspI CCGG 1 cut(s) 258
MspR9I CCNGG 1 cut(s) 258
MwoI GCNNNNNNNGC 1 cut(s) 56
NciI CCSGG 1 cut(s) 258
NlaIII CATG 2 cut(s) 207, 308
NmuCI GTSAC 1 cut(s) 133
NsiI ATGCAT 1 cut(s) 52
NspI RCATGY 1 cut(s) 207
PaeI GCATGC 1 cut(s) 207
PfeI GAWTC 1 cut(s) 150
PleI GAGTC 1 cut(s) 140
PpsI GAGTC 1 cut(s) 140
PsiI TTATAA 1 cut(s) 42
RsaI GTAC 1 cut(s) 294
RsaNI GTAC 1 cut(s) 293
RseI CAYNNNNRTG 1 cut(s) 303
SaqAI TTAA 1 cut(s) 310
SchI GAGTC 1 cut(s) 141
ScrFI CCNGG 1 cut(s) 258
SduI GDGCHC 2 cut(s) 226, 258
SetI ASST 2 cut(s) 66, 298
SfaNI GCATC 1 cut(s) 180
SmiMI CAYNNNNRTG 1 cut(s) 303
SphI GCATGC 1 cut(s) 207
Sse9I AATT 1 cut(s) 261
SspMI CTAG 2 cut(s) 98, 227
StyD4I CCNGG 1 cut(s) 256
StyI CCWWGG 1 cut(s) 60
TaaI ACNGT 1 cut(s) 139
TasI AATT 1 cut(s) 261
TfiI GAWTC 1 cut(s) 150
Tru1I TTAA 1 cut(s) 310
Tru9I TTAA 1 cut(s) 310
TscAI CASTG 1 cut(s) 144
TseFI GTSAC 1 cut(s) 133
Tsp45I GTSAC 1 cut(s) 133
TspRI CASTG 1 cut(s) 144
XceI RCATGY 1 cut(s) 207
XcmI CCANNNNNNNNNTGG 1 cut(s) 241
XspI CTAG 2 cut(s) 98, 227
Zsp2I ATGCAT 1 cut(s) 52
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.