MD09G1104900.v1.1

Cyclin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0012469
Physical Location & Seq
Forward (+)
7650062 .. 7651285
1224 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1104900.v1.1.491

Sequence Viewer

Length: 714 bp
ATGTTAGCCGCCGGCGATTTCACCGACCGCCATAGCCTGCCGGATCCAAGCATCCCGAGAGTGTTAACCATACTCTCTTTCGTTCTTGAAAAACTGGTGGCTCGAAATAACACGCTCGCAGATGACCTGAGCCTACAAGTCAATGGGCGGAGCTGTGGCTCGGCGGGGATTGGAAAGAGCTTGGATGTGTTTCACGGCGTGAGGCGCCCGAGCATAAGCATACCCAAGTACTTGGAGAGGCTGTACAAGTACACAGATTGCAGTCCATCATGTTTTGTGGTTGGATATGCGTATATAGATAGGCTGCTTCATAAGCACCCTGACTCTCTTGTGTTGTCCTTGAACGTGCATAGGCTGCTGGTCACAAGCGTTATGGTTGCTTCTAAGATGCTCGATGATGTGCACTACAACAATGCGTTTTACGCCCGCGTCGGAGGAGTGAGCAATGCTGAACTAAACAAACTAGAACTGGAGTTGCTTTTCCTGTTGGATTTCGGGGTCACGGTGAGCTCTAGGGATTTCGAGAGCTATTGCTTCCACTTGGAGAAAGAAAATTTGCAGAACGGGGCATGCCGAAGGATTGAAAGGCCATTGTTAGTCCTCAACGGTGTGGATGATGTACCTGAAATACCAGAAAATGCAGAGAGTAATTCCTTACCACCTCAGATATCAGAAGCTACACTGAGTTCCTCACTTCCTCAGATTGTGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin

Protein Analysis

238

Amino Acids

26.27

Weight (kDa)

5.49

Isoelectric Point (pI)

45.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin PF08613 21 - 166 9.4e-37 Cyclin
Cyclin_N PF00134 75 - 166 3.7e-09 Cyclin, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G21870
fragaria_vesca FvH4_3g46120 FvH4_6g43551
malus_domestica MD09G1104900.v1.1 MD17G1092600.v1.1
prunus_persica Prupe.3G220600_v2.0.a1
pyrus_communis pycom09g02800
rosa_chinensis RchiOBHm_Chr2g0160131
rosa_laevigata RLG00000021198
rosa_multiflora Rmu_sc0002023.1_g000003
rosa_roxburghii Rroxscaffold_2G00090030
rosa_rugosa Rorug02G0481000 Rorug02G0481100
rosa_samantha Rh2BG560300 Rh2BG560400 Rh2CG530700 Rh2CG530800 Rh2DG569100
rosa_wichuraiana Rw2G045240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 204
AccII CGCG 1 cut(s) 429
AciI CCGC 5 cut(s) 9, 28, 148, 164, 427
AclWI GGATC 2 cut(s) 38, 51
AcsI RAATTY 1 cut(s) 553
AcyI GRCGYC 1 cut(s) 205
AdeI CACNNNGTG 1 cut(s) 199
AfaI GTAC 4 cut(s) 230, 245, 251, 621
AgsI TTSAA 3 cut(s) 89, 343, 584
AluBI AGCT 5 cut(s) 153, 180, 510, 528, 677
AluI AGCT 5 cut(s) 153, 180, 510, 528, 677
Alw21I GWGCWC 2 cut(s) 405, 512
Alw44I GTGCAC 1 cut(s) 401
AlwI GGATC 2 cut(s) 38, 51
Ama87I CYCGRG 2 cut(s) 55, 208
AoxI GGCC 1 cut(s) 587
ApaLI GTGCAC 1 cut(s) 401
ApeKI GCWGC 2 cut(s) 304, 355
ApoI RAATTY 1 cut(s) 553
AspLEI GCGC 1 cut(s) 207
AsuHPI GGTGA 2 cut(s) 13, 517
AvaI CYCGRG 2 cut(s) 55, 208
BaeGI GKGCMC 1 cut(s) 405
BamHI GGATCC 1 cut(s) 43
BanI GGYRCC 1 cut(s) 204
BanII GRGCYC 1 cut(s) 512
Bbv12I GWGCWC 2 cut(s) 405, 512
BbvI GCAGC 2 cut(s) 291, 342
BccI CCATC 1 cut(s) 274
BceAI ACGGC 1 cut(s) 211
BfaI CTAG 2 cut(s) 464, 513
BfoI RGCGCY 1 cut(s) 208
BisI GCNGC 3 cut(s) 9, 305, 356
BlsI GCNGC 3 cut(s) 10, 306, 357
BmcAI AGTACT 1 cut(s) 230
BmeT110I CYCGRG 2 cut(s) 55, 208
BmiI GGNNCC 2 cut(s) 45, 206
BmsI GCATC 2 cut(s) 60, 378
BpmI CTGGAG 1 cut(s) 491
Bpu10I CCTNAGC 1 cut(s) 128
BsaHI GRCGYC 1 cut(s) 205
BsaXI ACNNNNNCTCC 2 cut(s) 227, 257
Bse118I RCCGGY 1 cut(s) 11
Bse1I ACTGG 2 cut(s) 99, 474
Bse3DI GCAATG 1 cut(s) 451
BseGI GGATG 3 cut(s) 51, 190, 619
BseMI GCAATG 1 cut(s) 451
BseMII CTCAG 4 cut(s) 119, 674, 677, 713
BseNI ACTGG 2 cut(s) 99, 474
BseRI GAGGAG 1 cut(s) 450
BseSI GKGCMC 1 cut(s) 405
BseXI GCAGC 2 cut(s) 291, 342
Bsh1236I CGCG 1 cut(s) 429
Bsh1285I CGRYCG 1 cut(s) 28
BshFI GGCC 1 cut(s) 589
BshNI GGYRCC 1 cut(s) 204
BsiEI CGRYCG 1 cut(s) 28
BsiHKAI GWGCWC 2 cut(s) 405, 512
BsiHKCI CYCGRG 2 cut(s) 55, 208
BsiSI CCGG 2 cut(s) 12, 41
BsnI GGCC 1 cut(s) 589
BsoBI CYCGRG 2 cut(s) 55, 208
Bsp1286I GDGCHC 2 cut(s) 405, 512
Bsp1407I TGTACA 1 cut(s) 243
Bsp143I GATC 1 cut(s) 43
BspACI CCGC 5 cut(s) 9, 28, 148, 164, 427
BspANI GGCC 1 cut(s) 589
BspCNI CTCAG 4 cut(s) 120, 675, 676, 712
BspFNI CGCG 1 cut(s) 429
BspLI GGNNCC 2 cut(s) 45, 206
BspPI GGATC 2 cut(s) 38, 51
BspT107I GGYRCC 1 cut(s) 204
BsrDI GCAATG 1 cut(s) 451
BsrFI RCCGGY 1 cut(s) 11
BsrGI TGTACA 1 cut(s) 243
BsrI ACTGG 2 cut(s) 99, 474
BssAI RCCGGY 1 cut(s) 11
BssMI GATC 1 cut(s) 43
BssNI GRCGYC 1 cut(s) 205
Bst4CI ACNGT 2 cut(s) 505, 608
BstACI GRCGYC 1 cut(s) 205
BstAPI GCANNNNNTGC 1 cut(s) 355
BstAUI TGTACA 1 cut(s) 243
BstC8I GCNNGC 5 cut(s) 13, 38, 117, 427, 571
BstDEI CTNAG 5 cut(s) 128, 384, 663, 683, 699
BstF5I GGATG 3 cut(s) 51, 190, 619
BstFNI CGCG 1 cut(s) 429
BstH2I RGCGCY 1 cut(s) 208
BstHHI GCGC 1 cut(s) 207
BstKTI GATC 1 cut(s) 46
BstMBI GATC 1 cut(s) 43
BstMCI CGRYCG 1 cut(s) 28
BstMWI GCNNNNNNNGC 4 cut(s) 204, 313, 355, 422
BstNSI RCATGY 1 cut(s) 573
BstSLI GKGCMC 1 cut(s) 405
BstUI CGCG 1 cut(s) 429
BstV1I GCAGC 2 cut(s) 291, 342
BstX2I RGATCY 1 cut(s) 43
BstXI CCANNNNNNTGG 1 cut(s) 232
BstYI RGATCY 1 cut(s) 43
BsuRI GGCC 1 cut(s) 589
BtsCI GGATG 3 cut(s) 51, 190, 619
BtsIMutI CAGTG 1 cut(s) 680
Cac8I GCNNGC 5 cut(s) 13, 38, 117, 427, 571
CfoI GCGC 1 cut(s) 207
Cfr10I RCCGGY 1 cut(s) 11
CseI GACGC 1 cut(s) 418
Csp6I GTAC 4 cut(s) 229, 244, 250, 620
CviAII CATG 2 cut(s) 270, 570
CviQI GTAC 4 cut(s) 229, 244, 250, 620
DdeI CTNAG 5 cut(s) 128, 384, 663, 683, 699
DinI GGCGCC 1 cut(s) 206
DpnI GATC 1 cut(s) 45
DpnII GATC 1 cut(s) 43
DraIII CACNNNGTG 1 cut(s) 199
EciI GGCGGA 1 cut(s) 163
Ecl136II GAGCTC 1 cut(s) 510
Eco24I GRGCYC 1 cut(s) 512
Eco32I GATATC 1 cut(s) 669
Eco53kI GAGCTC 1 cut(s) 510
Eco88I CYCGRG 2 cut(s) 55, 208
EcoICRI GAGCTC 1 cut(s) 510
EcoRV GATATC 1 cut(s) 669
EcoT38I GRGCYC 1 cut(s) 512
EgeI GGCGCC 1 cut(s) 206
EheI GGCGCC 1 cut(s) 206
FaeI CATG 2 cut(s) 273, 573
FatI CATG 2 cut(s) 269, 569
FauI CCCGC 2 cut(s) 157, 434
Fnu4HI GCNGC 3 cut(s) 9, 305, 356
FokI GGATG 3 cut(s) 38, 197, 626
FriOI GRGCYC 1 cut(s) 512
Fsp4HI GCNGC 3 cut(s) 9, 305, 356
FspBI CTAG 2 cut(s) 464, 513
GlaI GCGC 1 cut(s) 206
GluI GCNGC 3 cut(s) 9, 305, 356
GsuI CTGGAG 1 cut(s) 491
HaeII RGCGCY 1 cut(s) 208
HaeIII GGCC 1 cut(s) 589
HapII CCGG 2 cut(s) 12, 41
HgaI GACGC 1 cut(s) 418
HhaI GCGC 1 cut(s) 207
Hin1I GRCGYC 1 cut(s) 205
Hin1II CATG 2 cut(s) 273, 573
Hin6I GCGC 1 cut(s) 205
HinP1I GCGC 1 cut(s) 205
HincII GTYRAC 1 cut(s) 66
HindII GTYRAC 1 cut(s) 66
HinfI GANTC 1 cut(s) 323
HpaI GTTAAC 1 cut(s) 66
HpaII CCGG 2 cut(s) 12, 41
HphI GGTGA 2 cut(s) 13, 517
Hpy166II GTNNAC 4 cut(s) 66, 252, 403, 709
Hpy188I TCNGA 4 cut(s) 434, 666, 673, 702
Hpy188III TCNNGA 3 cut(s) 55, 86, 523
Hpy8I GTNNAC 4 cut(s) 66, 252, 403, 709
Hpy99I CGWCG 1 cut(s) 434
HpyAV CCTTC 1 cut(s) 570
HpyCH4III ACNGT 2 cut(s) 505, 608
HpyCH4IV ACGT 1 cut(s) 345
HpyCH4V TGCA 5 cut(s) 261, 349, 403, 559, 641
HpyF10VI GCNNNNNNNGC 4 cut(s) 204, 313, 355, 422
HpyF3I CTNAG 5 cut(s) 128, 384, 663, 683, 699
HpySE526I ACGT 1 cut(s) 345
Hsp92I GRCGYC 1 cut(s) 205
Hsp92II CATG 2 cut(s) 273, 573
HspAI GCGC 1 cut(s) 205
KasI GGCGCC 1 cut(s) 204
KroI GCCGGC 1 cut(s) 11
KroNI GCCGGC 1 cut(s) 13
KspAI GTTAAC 1 cut(s) 66
Kzo9I GATC 1 cut(s) 43
LmnI GCTCC 1 cut(s) 150
Lsp1109I GCAGC 2 cut(s) 291, 342
LweI GCATC 2 cut(s) 60, 378
MaeI CTAG 2 cut(s) 464, 513
MaeII ACGT 1 cut(s) 345
MaeIII GTNAC 2 cut(s) 361, 499
MalI GATC 1 cut(s) 45
MboI GATC 1 cut(s) 43
MflI RGATCY 1 cut(s) 43
MhlI GDGCHC 2 cut(s) 405, 512
MluCI AATT 2 cut(s) 553, 649
Mly113I GGCGCC 1 cut(s) 205
MlyI GAGTC 1 cut(s) 317
MmeI TCCRAC 3 cut(s) 262, 412, 468
MnlI CCTC 7 cut(s) 195, 231, 428, 611, 672, 700, 708
MreI CGCCGGCG 1 cut(s) 11
MroNI GCCGGC 1 cut(s) 11
MseI TTAA 1 cut(s) 65
MspI CCGG 2 cut(s) 12, 41
MvnI CGCG 1 cut(s) 429
MwoI GCNNNNNNNGC 4 cut(s) 204, 313, 355, 422
NaeI GCCGGC 1 cut(s) 13
NarI GGCGCC 1 cut(s) 205
NdeII GATC 1 cut(s) 43
NgoMIV GCCGGC 1 cut(s) 11
NlaIII CATG 2 cut(s) 273, 573
NlaIV GGNNCC 2 cut(s) 45, 206
NmeAIII GCCGAG 1 cut(s) 140
NmuCI GTSAC 2 cut(s) 361, 499
NspI RCATGY 1 cut(s) 573
PaeI GCATGC 1 cut(s) 573
PdiI GCCGGC 1 cut(s) 13
PkrI GCNGC 3 cut(s) 10, 306, 357
PleI GAGTC 1 cut(s) 317
PluTI GGCGCC 1 cut(s) 208
PpsI GAGTC 1 cut(s) 317
Psp124BI GAGCTC 1 cut(s) 512
PspN4I GGNNCC 2 cut(s) 45, 206
PsuI RGATCY 1 cut(s) 43
RsaI GTAC 4 cut(s) 230, 245, 251, 621
RsaNI GTAC 4 cut(s) 229, 244, 250, 620
SacI GAGCTC 1 cut(s) 512
SaqAI TTAA 1 cut(s) 65
SatI GCNGC 3 cut(s) 9, 305, 356
Sau3AI GATC 1 cut(s) 43
ScaI AGTACT 1 cut(s) 230
SchI GAGTC 1 cut(s) 317
SduI GDGCHC 2 cut(s) 405, 512
SetI ASST 9 cut(s) 129, 155, 182, 348, 512, 530, 625, 664, 679
SfaNI GCATC 2 cut(s) 60, 378
SfoI GGCGCC 1 cut(s) 206
SgrAI CRCCGGYG 1 cut(s) 11
SphI GCATGC 1 cut(s) 573
Sse9I AATT 2 cut(s) 553, 649
SsiI CCGC 5 cut(s) 9, 28, 148, 164, 427
SspDI GGCGCC 1 cut(s) 204
SspMI CTAG 2 cut(s) 464, 513
SstI GAGCTC 1 cut(s) 512
TaaI ACNGT 2 cut(s) 505, 608
TaiI ACGT 1 cut(s) 348
TaqI TCGA 3 cut(s) 103, 393, 522
TasI AATT 2 cut(s) 553, 649
TatI WGTACW 3 cut(s) 228, 243, 249
TauI GCSGC 1 cut(s) 11
Tru1I TTAA 1 cut(s) 65
Tru9I TTAA 1 cut(s) 65
TscAI CASTG 1 cut(s) 687
TseFI GTSAC 2 cut(s) 361, 499
TseI GCWGC 2 cut(s) 304, 355
Tsp45I GTSAC 2 cut(s) 361, 499
TspDTI ATGAA 1 cut(s) 299
TspRI CASTG 1 cut(s) 687
VneI GTGCAC 1 cut(s) 401
XapI RAATTY 1 cut(s) 553
XceI RCATGY 1 cut(s) 573
XspI CTAG 2 cut(s) 464, 513
ZrmI AGTACT 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.