FvH4_3g46120

Cyclin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0012469
Physical Location & Seq
Reverse (-)
38309675 .. 38312048
2374 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g46120.t1

Sequence Viewer

Length: 537 bp
ATGGAGCGGTCGTCGACAACCACCAGCCGAATCCCCTCTCTTCGCTCTTCCTCCTCCTACCTTCTATTTCAGCATACATCCACCCATTTGGCAAATCGGAATCCAAACCCTAAATCCCCAATTCCAAATCCGGCTCGATTCATCCCTCTCTGGCGAAGTCTTTGCTTCTCTAAGGTAGAAGAACATAAGCGACTTTATCATGAACAACTTAAGATCAATGGGGCGGCTATGAAGTCTGATCAGATGCCACTCTTAGCTTTCCCTTGGCATTACAACAATGCATTTTATGCCAAGGTTGGGGGAGTAAGAAATGCCGAATTGAACAGACTAGAAGTGGAATTCCTTTTCTTGCTGGATTTTGGAGTCACCAGAGTCTTTGAGAGCTATTGCTTTCACTTGGAAAAAGAAATGATGTTGAATGGGGCATGCCAAACAATTGAAAGGGCTTTAGTACTCCTCATTACAGATGTGGCTGATGTGCCTGAAATTTCTAAAAACACGCAGAGTTCCTCATCAGAATCTAAGAATCATGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin

Protein Analysis

179

Amino Acids

20.32

Weight (kDa)

8.81

Isoelectric Point (pI)

55.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin PF08613 90 - 121 1e-09 Cyclin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G21870
fragaria_vesca FvH4_3g46120 FvH4_6g43551
malus_domestica MD09G1104900.v1.1 MD17G1092600.v1.1
prunus_persica Prupe.3G220600_v2.0.a1
pyrus_communis pycom09g02800
rosa_chinensis RchiOBHm_Chr2g0160131
rosa_laevigata RLG00000021198
rosa_multiflora Rmu_sc0002023.1_g000003
rosa_roxburghii Rroxscaffold_2G00090030
rosa_rugosa Rorug02G0481000 Rorug02G0481100
rosa_samantha Rh2BG560300 Rh2BG560400 Rh2CG530700 Rh2CG530800 Rh2DG569100
rosa_wichuraiana Rw2G045240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 7
AccI GTMKAC 1 cut(s) 14
AciI CCGC 2 cut(s) 7, 224
AcsI RAATTY 2 cut(s) 338, 486
AfaI GTAC 1 cut(s) 453
AfiI CCNNNNNNNGG 1 cut(s) 297
AflII CTTAAG 1 cut(s) 209
AgsI TTSAA 3 cut(s) 322, 418, 440
AluBI AGCT 2 cut(s) 257, 384
AluI AGCT 2 cut(s) 257, 384
ApoI RAATTY 2 cut(s) 338, 486
AsuHPI GGTGA 1 cut(s) 358
BcgI CGANNNNNNTGC 2 cut(s) 144, 178
BclI TGATCA 1 cut(s) 238
BfaI CTAG 1 cut(s) 329
BfrI CTTAAG 1 cut(s) 209
BisI GCNGC 1 cut(s) 225
BlsI GCNGC 1 cut(s) 226
BmcAI AGTACT 1 cut(s) 453
BmsI GCATC 1 cut(s) 234
BsaJI CCNNGG 2 cut(s) 263, 291
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 1 cut(s) 297
BseDI CCNNGG 2 cut(s) 263, 291
BseGI GGATG 2 cut(s) 77, 141
BseLI CCNNNNNNNGG 1 cut(s) 297
BseRI GAGGAG 2 cut(s) 43, 446
Bsh1285I CGRYCG 1 cut(s) 11
BsiEI CGRYCG 1 cut(s) 11
BsiSI CCGG 1 cut(s) 131
BslI CCNNNNNNNGG 1 cut(s) 297
Bsp143I GATC 2 cut(s) 213, 238
BspACI CCGC 2 cut(s) 7, 224
BspHI TCATGA 1 cut(s) 199
BspQI GCTCTTC 1 cut(s) 52
BspTI CTTAAG 1 cut(s) 209
BsrBI CCGCTC 1 cut(s) 7
BssECI CCNNGG 2 cut(s) 263, 291
BssMI GATC 2 cut(s) 213, 238
BssT1I CCWWGG 2 cut(s) 263, 291
Bst6I CTCTTC 2 cut(s) 45, 52
BstAFI CTTAAG 1 cut(s) 209
BstAPI GCANNNNNTGC 1 cut(s) 287
BstC8I GCNNGC 1 cut(s) 427
BstDEI CTNAG 3 cut(s) 171, 253, 522
BstF5I GGATG 2 cut(s) 77, 141
BstKTI GATC 2 cut(s) 216, 241
BstMBI GATC 2 cut(s) 213, 238
BstMCI CGRYCG 1 cut(s) 11
BstMWI GCNNNNNNNGC 1 cut(s) 287
BstNSI RCATGY 1 cut(s) 429
BstXI CCANNNNNNTGG 1 cut(s) 88
BtsCI GGATG 2 cut(s) 77, 141
Cac8I GCNNGC 1 cut(s) 427
CciI TCATGA 1 cut(s) 199
Csp6I GTAC 1 cut(s) 452
CviAII CATG 3 cut(s) 200, 426, 530
CviJI RGCY 7 cut(s) 27, 134, 227, 257, 384, 446, 473
CviKI_1 RGCY 7 cut(s) 27, 134, 227, 257, 384, 446, 473
CviQI GTAC 1 cut(s) 452
DdeI CTNAG 3 cut(s) 171, 253, 522
DpnI GATC 2 cut(s) 215, 240
DpnII GATC 2 cut(s) 213, 238
Eam1104I CTCTTC 2 cut(s) 45, 52
EarI CTCTTC 2 cut(s) 45, 52
Eco130I CCWWGG 2 cut(s) 263, 291
EcoRI GAATTC 1 cut(s) 338
EcoT14I CCWWGG 2 cut(s) 263, 291
EcoT22I ATGCAT 1 cut(s) 283
ErhI CCWWGG 2 cut(s) 263, 291
FaeI CATG 3 cut(s) 203, 429, 533
FaiI YATR 7 cut(s) 75, 186, 201, 230, 288, 427, 531
FatI CATG 3 cut(s) 199, 425, 529
FbaI TGATCA 1 cut(s) 238
FblI GTMKAC 1 cut(s) 14
Fnu4HI GCNGC 1 cut(s) 225
FokI GGATG 2 cut(s) 64, 128
Fsp4HI GCNGC 1 cut(s) 225
FspBI CTAG 1 cut(s) 329
GluI GCNGC 1 cut(s) 225
HapII CCGG 1 cut(s) 131
Hin1II CATG 3 cut(s) 203, 429, 533
HincII GTYRAC 1 cut(s) 15
HindII GTYRAC 1 cut(s) 15
HinfI GANTC 7 cut(s) 30, 100, 138, 363, 372, 518, 526
HpaII CCGG 1 cut(s) 131
HphI GGTGA 1 cut(s) 358
Hpy166II GTNNAC 1 cut(s) 15
Hpy188I TCNGA 4 cut(s) 99, 238, 243, 517
Hpy188III TCNNGA 1 cut(s) 200
Hpy8I GTNNAC 1 cut(s) 15
Hpy99I CGWCG 1 cut(s) 16
HpyAV CCTTC 1 cut(s) 71
HpyCH4V TGCA 1 cut(s) 281
HpyF10VI GCNNNNNNNGC 1 cut(s) 287
HpyF3I CTNAG 3 cut(s) 171, 253, 522
Hsp92II CATG 3 cut(s) 203, 429, 533
Ksp22I TGATCA 1 cut(s) 238
Kzo9I GATC 2 cut(s) 213, 238
LguI GCTCTTC 1 cut(s) 52
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 6 cut(s) 37, 136, 144, 338, 382, 495
LweI GCATC 1 cut(s) 234
MaeI CTAG 1 cut(s) 329
MaeIII GTNAC 1 cut(s) 364
MalI GATC 2 cut(s) 215, 240
MbiI CCGCTC 1 cut(s) 7
MboI GATC 2 cut(s) 213, 238
MboII GAAGA 3 cut(s) 32, 39, 191
MfeI CAATTG 1 cut(s) 435
MluCI AATT 5 cut(s) 120, 317, 338, 435, 486
MlyI GAGTC 2 cut(s) 372, 381
MnlI CCTC 6 cut(s) 46, 61, 64, 156, 467, 520
Mph1103I ATGCAT 1 cut(s) 283
MseI TTAA 2 cut(s) 210, 535
MspCI CTTAAG 1 cut(s) 209
MspI CCGG 1 cut(s) 131
MunI CAATTG 1 cut(s) 435
MwoI GCNNNNNNNGC 1 cut(s) 287
NdeII GATC 2 cut(s) 213, 238
NlaIII CATG 3 cut(s) 203, 429, 533
NmuCI GTSAC 1 cut(s) 364
NsiI ATGCAT 1 cut(s) 283
NspI RCATGY 1 cut(s) 429
PaeI GCATGC 1 cut(s) 429
PagI TCATGA 1 cut(s) 199
PciSI GCTCTTC 1 cut(s) 52
PfeI GAWTC 5 cut(s) 30, 100, 138, 518, 526
PkrI GCNGC 1 cut(s) 226
PleI GAGTC 2 cut(s) 371, 380
PpsI GAGTC 2 cut(s) 371, 380
RsaI GTAC 1 cut(s) 453
RsaNI GTAC 1 cut(s) 452
SalI GTCGAC 1 cut(s) 13
SapI GCTCTTC 1 cut(s) 52
SaqAI TTAA 2 cut(s) 210, 535
SatI GCNGC 1 cut(s) 225
Sau3AI GATC 2 cut(s) 213, 238
ScaI AGTACT 1 cut(s) 453
SchI GAGTC 2 cut(s) 372, 381
SetI ASST 5 cut(s) 63, 177, 259, 297, 386
SfaNI GCATC 1 cut(s) 234
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
SphI GCATGC 1 cut(s) 429
Sse9I AATT 5 cut(s) 120, 317, 338, 435, 486
SsiI CCGC 2 cut(s) 7, 224
SspMI CTAG 1 cut(s) 329
StyI CCWWGG 2 cut(s) 263, 291
TaqI TCGA 2 cut(s) 14, 136
TasI AATT 5 cut(s) 120, 317, 338, 435, 486
TatI WGTACW 1 cut(s) 451
TauI GCSGC 1 cut(s) 227
TfiI GAWTC 5 cut(s) 30, 100, 138, 518, 526
Tru1I TTAA 2 cut(s) 210, 535
Tru9I TTAA 2 cut(s) 210, 535
TseFI GTSAC 1 cut(s) 364
Tsp45I GTSAC 1 cut(s) 364
TspDTI ATGAA 3 cut(s) 130, 216, 245
Vha464I CTTAAG 1 cut(s) 209
XapI RAATTY 2 cut(s) 338, 486
XceI RCATGY 1 cut(s) 429
XmiI GTMKAC 1 cut(s) 14
XspI CTAG 1 cut(s) 329
ZrmI AGTACT 1 cut(s) 453
Zsp2I ATGCAT 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.