Rroxscaffold_2G00090030

Cyclin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0012469
Physical Location & Seq
Forward (+)
11871242 .. 11873429
2188 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00090030.1

Sequence Viewer

Length: 699 bp
ATGTTATCCGCCGGTGAGTTCACCAATCACCTTAGCAGGCCGGAGCCGAGCATTCCAAGAGTGCTGACCATACTATCTTTTGTACTAGAGAAGTTGGTGGCTCGAAATAATGGTCTAGTAGACGACCTGACCCAACCACTGGATGCTCTGAGCTGTGGCTCGGCTGCAATCGGGAAGAGATTGAACCCGTTTCACGGCGTGAGGGCTCCGAGTATAAGCATACCTAAGTACTTGGAGAGGCTGTACAAGTACACAGATTGTAGCCCTTCATGTTTTGTGGTAGCATATGTGTATATAGACAGACTGGTGCATAAACACCCTGACTCGCTTGTGTTGTCCTTGAATGTACATAGGTTGCTGGTTACAAGCGTCATGGTTGCTTCTAAGATGCTAGATGATGTGCATTATAACAATGCATTTTATGCCAAGGTTGGGGGAGTAAGCAATGCTGAACTGAACAGACTAGAAGTGGAGTTTCTTTTCCTGCTGGATTTTGGAGTCACAGTGAGCTCCAGAATCTTTGAGAGTTATTGCTTTCACTTGGAAAAAGAAATGATGCTGAATGGGGCATGCCAAACAATAGAAAGGGCTCTAGTCCCCATTACTGATGTGGCTGATGTGCCCGAAATTCCTGAAAATACGCAGAGTTCCTCATCAGTACCTGATAATCATGGTCAACTCTCATTTTCTGTTACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin

Protein Analysis

232

Amino Acids

25.72

Weight (kDa)

5.72

Isoelectric Point (pI)

37.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin PF08613 22 - 166 3.9e-40 Cyclin
Cyclin_N PF00134 75 - 166 1.4e-09 Cyclin, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G21870
fragaria_vesca FvH4_3g46120 FvH4_6g43551
malus_domestica MD09G1104900.v1.1 MD17G1092600.v1.1
prunus_persica Prupe.3G220600_v2.0.a1
pyrus_communis pycom09g02800
rosa_chinensis RchiOBHm_Chr2g0160131
rosa_laevigata RLG00000021198
rosa_multiflora Rmu_sc0002023.1_g000003
rosa_roxburghii Rroxscaffold_2G00090030
rosa_rugosa Rorug02G0481000 Rorug02G0481100
rosa_samantha Rh2BG560300 Rh2BG560400 Rh2CG530700 Rh2CG530800 Rh2DG569100
rosa_wichuraiana Rw2G045240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 408
AccB7I CCANNNNNTGG 1 cut(s) 139
AccI GTMKAC 1 cut(s) 120
AciI CCGC 1 cut(s) 9
AcsI RAATTY 1 cut(s) 627
AdeI CACNNNGTG 1 cut(s) 199
AfaI GTAC 6 cut(s) 84, 230, 245, 251, 348, 660
AfiI CCNNNNNNNGG 3 cut(s) 139, 194, 432
AgsI TTSAA 2 cut(s) 184, 343
AluBI AGCT 2 cut(s) 153, 510
AluI AGCT 2 cut(s) 153, 510
Alw21I GWGCWC 1 cut(s) 512
AlwNI CAGNNNCTG 1 cut(s) 662
AoxI GGCC 1 cut(s) 38
ApeKI GCWGC 1 cut(s) 164
ApoI RAATTY 1 cut(s) 627
ArsI GACNNNNNNTTYG 2 cut(s) 97, 129
AsuHPI GGTGA 3 cut(s) 13, 20, 26
BaeGI GKGCMC 1 cut(s) 624
BanII GRGCYC 3 cut(s) 208, 512, 592
Bbv12I GWGCWC 1 cut(s) 512
BbvI GCAGC 1 cut(s) 151
BceAI ACGGC 1 cut(s) 211
BfaI CTAG 5 cut(s) 86, 116, 392, 464, 593
BisI GCNGC 1 cut(s) 165
BlsI GCNGC 1 cut(s) 166
BmcAI AGTACT 1 cut(s) 230
BmiI GGNNCC 2 cut(s) 45, 207
BmsI GCATC 3 cut(s) 133, 378, 546
BpmI CTGGAG 1 cut(s) 496
Bpu10I CCTNAGC 1 cut(s) 32
BsaAI YACGTR 1 cut(s) 696
BsaJI CCNNGG 1 cut(s) 426
BsaXI ACNNNNNCTCC 4 cut(s) 227, 257, 489, 519
Bsc4I CCNNNNNNNGG 3 cut(s) 139, 194, 432
Bse118I RCCGGY 1 cut(s) 11
Bse1I ACTGG 2 cut(s) 144, 309
Bse3DI GCAATG 1 cut(s) 451
BseDI CCNNGG 1 cut(s) 426
BseGI GGATG 1 cut(s) 148
BseLI CCNNNNNNNGG 3 cut(s) 139, 194, 432
BseMI GCAATG 1 cut(s) 451
BseMII CTCAG 1 cut(s) 140
BseNI ACTGG 2 cut(s) 144, 309
BseSI GKGCMC 1 cut(s) 624
BseXI GCAGC 1 cut(s) 151
BshFI GGCC 1 cut(s) 40
BsiHKAI GWGCWC 1 cut(s) 512
BsiSI CCGG 2 cut(s) 12, 41
BslFI GGGAC 1 cut(s) 581
BslI CCNNNNNNNGG 3 cut(s) 139, 194, 432
BsmFI GGGAC 1 cut(s) 581
BsmI GAATGC 1 cut(s) 51
BsnI GGCC 1 cut(s) 40
Bsp1286I GDGCHC 4 cut(s) 208, 512, 592, 624
Bsp1407I TGTACA 2 cut(s) 243, 346
BspACI CCGC 1 cut(s) 9
BspANI GGCC 1 cut(s) 40
BspCNI CTCAG 1 cut(s) 141
BspLI GGNNCC 2 cut(s) 45, 207
BsrDI GCAATG 1 cut(s) 451
BsrFI RCCGGY 1 cut(s) 11
BsrGI TGTACA 2 cut(s) 243, 346
BsrI ACTGG 2 cut(s) 144, 309
BssAI RCCGGY 1 cut(s) 11
BssECI CCNNGG 1 cut(s) 426
BssT1I CCWWGG 1 cut(s) 426
Bst4CI ACNGT 1 cut(s) 505
Bst6I CTCTTC 1 cut(s) 170
BstAPI GCANNNNNTGC 1 cut(s) 422
BstAUI TGTACA 2 cut(s) 243, 346
BstBAI YACGTR 1 cut(s) 696
BstC8I GCNNGC 2 cut(s) 38, 571
BstDEI CTNAG 4 cut(s) 32, 149, 225, 384
BstF5I GGATG 1 cut(s) 148
BstMWI GCNNNNNNNGC 1 cut(s) 422
BstNSI RCATGY 1 cut(s) 573
BstSLI GKGCMC 1 cut(s) 624
BstSNI TACGTA 1 cut(s) 696
BstV1I GCAGC 1 cut(s) 151
BsuRI GGCC 1 cut(s) 40
BtsCI GGATG 1 cut(s) 148
BtsIMutI CAGTG 2 cut(s) 137, 510
Cac8I GCNNGC 2 cut(s) 38, 571
CaiI CAGNNNCTG 1 cut(s) 662
Cfr10I RCCGGY 1 cut(s) 11
CseI GACGC 1 cut(s) 358
Csp6I GTAC 6 cut(s) 83, 229, 244, 250, 347, 659
CviAII CATG 4 cut(s) 270, 373, 570, 671
CviQI GTAC 6 cut(s) 83, 229, 244, 250, 347, 659
DdeI CTNAG 4 cut(s) 32, 149, 225, 384
DraIII CACNNNGTG 1 cut(s) 199
Eam1104I CTCTTC 1 cut(s) 170
EarI CTCTTC 1 cut(s) 170
Ecl136II GAGCTC 1 cut(s) 510
Eco105I TACGTA 1 cut(s) 696
Eco130I CCWWGG 1 cut(s) 426
Eco24I GRGCYC 3 cut(s) 208, 512, 592
Eco53kI GAGCTC 1 cut(s) 510
EcoICRI GAGCTC 1 cut(s) 510
EcoT14I CCWWGG 1 cut(s) 426
EcoT22I ATGCAT 1 cut(s) 418
EcoT38I GRGCYC 3 cut(s) 208, 512, 592
ErhI CCWWGG 1 cut(s) 426
FaeI CATG 4 cut(s) 273, 376, 573, 674
FaqI GGGAC 1 cut(s) 581
FatI CATG 4 cut(s) 269, 372, 569, 670
FauNDI CATATG 1 cut(s) 286
FblI GTMKAC 1 cut(s) 120
Fnu4HI GCNGC 1 cut(s) 165
FokI GGATG 1 cut(s) 155
FriOI GRGCYC 3 cut(s) 208, 512, 592
Fsp4HI GCNGC 1 cut(s) 165
FspBI CTAG 5 cut(s) 86, 116, 392, 464, 593
GluI GCNGC 1 cut(s) 165
GsuI CTGGAG 1 cut(s) 496
HaeIII GGCC 1 cut(s) 40
HapII CCGG 2 cut(s) 12, 41
HgaI GACGC 1 cut(s) 358
Hin1II CATG 4 cut(s) 273, 376, 573, 674
HincII GTYRAC 1 cut(s) 677
HindII GTYRAC 1 cut(s) 677
HinfI GANTC 3 cut(s) 323, 498, 516
HpaII CCGG 2 cut(s) 12, 41
HphI GGTGA 3 cut(s) 13, 20, 26
Hpy166II GTNNAC 4 cut(s) 21, 121, 252, 677
Hpy188I TCNGA 2 cut(s) 150, 210
Hpy188III TCNNGA 3 cut(s) 172, 513, 632
Hpy8I GTNNAC 4 cut(s) 21, 121, 252, 677
HpyAV CCTTC 1 cut(s) 276
HpyCH4III ACNGT 1 cut(s) 505
HpyCH4IV ACGT 1 cut(s) 695
HpyCH4V TGCA 4 cut(s) 167, 310, 403, 416
HpyF10VI GCNNNNNNNGC 1 cut(s) 422
HpyF3I CTNAG 4 cut(s) 32, 149, 225, 384
HpySE526I ACGT 1 cut(s) 695
Hsp92II CATG 4 cut(s) 273, 376, 573, 674
LmnI GCTCC 3 cut(s) 43, 211, 515
Lsp1109I GCAGC 1 cut(s) 151
LweI GCATC 3 cut(s) 133, 378, 546
MaeI CTAG 5 cut(s) 86, 116, 392, 464, 593
MaeII ACGT 1 cut(s) 695
MaeIII GTNAC 3 cut(s) 361, 499, 691
MboII GAAGA 1 cut(s) 187
MhlI GDGCHC 4 cut(s) 208, 512, 592, 624
MluCI AATT 1 cut(s) 627
MlyI GAGTC 2 cut(s) 317, 507
MnlI CCTC 3 cut(s) 195, 231, 661
Mph1103I ATGCAT 1 cut(s) 418
MspI CCGG 2 cut(s) 12, 41
Mva1269I GAATGC 1 cut(s) 51
MwoI GCNNNNNNNGC 1 cut(s) 422
NdeI CATATG 1 cut(s) 286
NlaIII CATG 4 cut(s) 273, 376, 573, 674
NlaIV GGNNCC 2 cut(s) 45, 207
NmeAIII GCCGAG 2 cut(s) 72, 140
NmuCI GTSAC 1 cut(s) 499
NsiI ATGCAT 1 cut(s) 418
NspI RCATGY 1 cut(s) 573
PaeI GCATGC 1 cut(s) 573
PctI GAATGC 1 cut(s) 51
PfeI GAWTC 1 cut(s) 516
PflMI CCANNNNNTGG 1 cut(s) 139
PkrI GCNGC 1 cut(s) 166
PleI GAGTC 2 cut(s) 317, 506
PpsI GAGTC 2 cut(s) 317, 506
Ppu21I YACGTR 1 cut(s) 696
PsiI TTATAA 1 cut(s) 408
Psp124BI GAGCTC 1 cut(s) 512
PspN4I GGNNCC 2 cut(s) 45, 207
PstNI CAGNNNCTG 1 cut(s) 662
RsaI GTAC 6 cut(s) 84, 230, 245, 251, 348, 660
RsaNI GTAC 6 cut(s) 83, 229, 244, 250, 347, 659
SacI GAGCTC 1 cut(s) 512
SatI GCNGC 1 cut(s) 165
ScaI AGTACT 1 cut(s) 230
SchI GAGTC 2 cut(s) 317, 507
SduI GDGCHC 4 cut(s) 208, 512, 592, 624
SetI ASST 9 cut(s) 33, 129, 155, 226, 356, 432, 512, 664, 698
SfaNI GCATC 3 cut(s) 133, 378, 546
SgrAI CRCCGGYG 1 cut(s) 11
SnaBI TACGTA 1 cut(s) 696
SphI GCATGC 1 cut(s) 573
Sse9I AATT 1 cut(s) 627
SsiI CCGC 1 cut(s) 9
SspMI CTAG 5 cut(s) 86, 116, 392, 464, 593
SstI GAGCTC 1 cut(s) 512
StyI CCWWGG 1 cut(s) 426
TaaI ACNGT 1 cut(s) 505
TaiI ACGT 1 cut(s) 698
TaqI TCGA 1 cut(s) 103
TasI AATT 1 cut(s) 627
TatI WGTACW 5 cut(s) 82, 228, 243, 249, 346
TfiI GAWTC 1 cut(s) 516
TscAI CASTG 2 cut(s) 144, 510
TseFI GTSAC 1 cut(s) 499
TseI GCWGC 1 cut(s) 164
Tsp45I GTSAC 1 cut(s) 499
TspDTI ATGAA 1 cut(s) 258
TspRI CASTG 2 cut(s) 144, 510
Van91I CCANNNNNTGG 1 cut(s) 139
XapI RAATTY 1 cut(s) 627
XceI RCATGY 1 cut(s) 573
XcmI CCANNNNNNNNNTGG 1 cut(s) 607
XmiI GTMKAC 1 cut(s) 120
XspI CTAG 5 cut(s) 86, 116, 392, 464, 593
ZrmI AGTACT 1 cut(s) 230
Zsp2I ATGCAT 1 cut(s) 418
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.