Rh2DG569100

Cyclin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0012469
Physical Location & Seq
Reverse (-)
79880584 .. 79881734
1151 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG569100.1

Sequence Viewer

Length: 669 bp
ATGTTATCCGTCGGTGAGTTCACCAATCACCTTAGCCGGCCGGAGCCGAGCATTCCAAGAGTGCTGACCATACTATCTTTTGTACTAGAGAAGTTGGTGGCTCGAAATAATGGTCTAGTAGACGACCTGACCCAACCACTGGATGCTCTGAGCTGTGGCTCGGCTGCAATCGGGAAGAGATTGAACCCGTTTCACGGCGTGAGGGCTCCGAGTATAAGCATACCTAAGTACTTGGAGAGGCTGTACAAGTACACAGATTGTAGCCCTTCATGTTTTGTGGTAGCATATGTGTATATAGACAGACTGGTGCATAAACACCCTGACTCGCTTGTGTTGTCCTTGAATGTACATAGGTTGCTGGTTACAAGCGTCATGGTTGCTTCTAAGATGCTAGATGATGTGCATTATAACAATGCATTTTATGCCAAGGTTGGGGGAGTAAGCAATGCTGAACTGAACAGACTAGAAGTGGAGTTTCTTTTCCTGCTGGATTTTGGAGTCACAGTGAGCTCCAGAATCTTTGAGAGTTATTGCTTTCACTTGGAAAAAGAAATGATGCTGAATGGGGCATGCCAAACAATAGAAAGGGCTCTAGTCCCCATTACTGATGTGCCCGGAATTTCTGAAAATACGCAGAGTTCCTCATCAGTACCTCATAATCATGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin

Protein Analysis

222

Amino Acids

24.64

Weight (kDa)

6.29

Isoelectric Point (pI)

38.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin PF08613 22 - 166 3.4e-40 Cyclin
Cyclin_N PF00134 75 - 166 1.3e-09 Cyclin, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G21870
fragaria_vesca FvH4_3g46120 FvH4_6g43551
malus_domestica MD09G1104900.v1.1 MD17G1092600.v1.1
prunus_persica Prupe.3G220600_v2.0.a1
pyrus_communis pycom09g02800
rosa_chinensis RchiOBHm_Chr2g0160131
rosa_laevigata RLG00000021198
rosa_multiflora Rmu_sc0002023.1_g000003
rosa_roxburghii Rroxscaffold_2G00090030
rosa_rugosa Rorug02G0481000 Rorug02G0481100
rosa_samantha Rh2BG560300 Rh2BG560400 Rh2CG530700 Rh2CG530800 Rh2DG569100
rosa_wichuraiana Rw2G045240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 408
AccB7I CCANNNNNTGG 1 cut(s) 139
AccI GTMKAC 1 cut(s) 120
AcoI YGGCCR 1 cut(s) 38
AcsI RAATTY 1 cut(s) 618
AdeI CACNNNGTG 1 cut(s) 199
AfaI GTAC 6 cut(s) 84, 230, 245, 251, 348, 651
AfiI CCNNNNNNNGG 3 cut(s) 139, 194, 432
AgsI TTSAA 2 cut(s) 184, 343
AluBI AGCT 2 cut(s) 153, 510
AluI AGCT 2 cut(s) 153, 510
Alw21I GWGCWC 1 cut(s) 512
AoxI GGCC 1 cut(s) 38
ApeKI GCWGC 1 cut(s) 164
ApoI RAATTY 1 cut(s) 618
ArsI GACNNNNNNTTYG 2 cut(s) 97, 129
AsuC2I CCSGG 1 cut(s) 615
AsuHPI GGTGA 3 cut(s) 13, 20, 26
BaeGI GKGCMC 1 cut(s) 615
BanII GRGCYC 3 cut(s) 208, 512, 592
Bbv12I GWGCWC 1 cut(s) 512
BbvI GCAGC 1 cut(s) 151
BceAI ACGGC 1 cut(s) 211
BcnI CCSGG 1 cut(s) 615
BfaI CTAG 5 cut(s) 86, 116, 392, 464, 593
BisI GCNGC 1 cut(s) 165
BlsI GCNGC 1 cut(s) 166
BmcAI AGTACT 1 cut(s) 230
Bme1390I CCNGG 1 cut(s) 615
BmiI GGNNCC 2 cut(s) 45, 207
BmrFI CCNGG 1 cut(s) 615
BmsI GCATC 3 cut(s) 133, 378, 546
BpmI CTGGAG 1 cut(s) 496
Bpu10I CCTNAGC 1 cut(s) 32
BpuMI CCSGG 1 cut(s) 615
BsaJI CCNNGG 1 cut(s) 426
BsaXI ACNNNNNCTCC 4 cut(s) 227, 257, 489, 519
Bsc4I CCNNNNNNNGG 3 cut(s) 139, 194, 432
Bse118I RCCGGY 1 cut(s) 36
Bse1I ACTGG 2 cut(s) 144, 309
Bse3DI GCAATG 1 cut(s) 451
BseDI CCNNGG 1 cut(s) 426
BseGI GGATG 1 cut(s) 148
BseLI CCNNNNNNNGG 3 cut(s) 139, 194, 432
BseMI GCAATG 1 cut(s) 451
BseMII CTCAG 1 cut(s) 140
BseNI ACTGG 2 cut(s) 144, 309
BseSI GKGCMC 1 cut(s) 615
BseX3I CGGCCG 1 cut(s) 38
BseXI GCAGC 1 cut(s) 151
Bsh1285I CGRYCG 1 cut(s) 41
BshFI GGCC 1 cut(s) 40
BsiEI CGRYCG 1 cut(s) 41
BsiHKAI GWGCWC 1 cut(s) 512
BsiSI CCGG 3 cut(s) 37, 41, 615
BslFI GGGAC 1 cut(s) 581
BslI CCNNNNNNNGG 3 cut(s) 139, 194, 432
BsmFI GGGAC 1 cut(s) 581
BsmI GAATGC 1 cut(s) 51
BsnI GGCC 1 cut(s) 40
Bsp1286I GDGCHC 4 cut(s) 208, 512, 592, 615
Bsp1407I TGTACA 2 cut(s) 243, 346
BspANI GGCC 1 cut(s) 40
BspCNI CTCAG 1 cut(s) 141
BspLI GGNNCC 2 cut(s) 45, 207
BsrDI GCAATG 1 cut(s) 451
BsrFI RCCGGY 1 cut(s) 36
BsrGI TGTACA 2 cut(s) 243, 346
BsrI ACTGG 2 cut(s) 144, 309
BssAI RCCGGY 1 cut(s) 36
BssECI CCNNGG 1 cut(s) 426
BssT1I CCWWGG 1 cut(s) 426
Bst4CI ACNGT 1 cut(s) 505
Bst6I CTCTTC 1 cut(s) 170
BstAPI GCANNNNNTGC 1 cut(s) 422
BstAUI TGTACA 2 cut(s) 243, 346
BstC8I GCNNGC 2 cut(s) 38, 571
BstDEI CTNAG 4 cut(s) 32, 149, 225, 384
BstF5I GGATG 1 cut(s) 148
BstMCI CGRYCG 1 cut(s) 41
BstMWI GCNNNNNNNGC 1 cut(s) 422
BstNSI RCATGY 1 cut(s) 573
BstSCI CCNGG 1 cut(s) 613
BstSLI GKGCMC 1 cut(s) 615
BstV1I GCAGC 1 cut(s) 151
BstZI CGGCCG 1 cut(s) 38
BsuRI GGCC 1 cut(s) 40
BtsCI GGATG 1 cut(s) 148
BtsIMutI CAGTG 2 cut(s) 137, 510
Cac8I GCNNGC 2 cut(s) 38, 571
Cfr10I RCCGGY 1 cut(s) 36
CseI GACGC 1 cut(s) 358
Csp6I GTAC 6 cut(s) 83, 229, 244, 250, 347, 650
CviAII CATG 4 cut(s) 270, 373, 570, 662
CviQI GTAC 6 cut(s) 83, 229, 244, 250, 347, 650
DdeI CTNAG 4 cut(s) 32, 149, 225, 384
DraIII CACNNNGTG 1 cut(s) 199
EaeI YGGCCR 1 cut(s) 38
EagI CGGCCG 1 cut(s) 38
Eam1104I CTCTTC 1 cut(s) 170
EarI CTCTTC 1 cut(s) 170
Ecl136II GAGCTC 1 cut(s) 510
EclXI CGGCCG 1 cut(s) 38
Eco130I CCWWGG 1 cut(s) 426
Eco24I GRGCYC 3 cut(s) 208, 512, 592
Eco52I CGGCCG 1 cut(s) 38
Eco53kI GAGCTC 1 cut(s) 510
EcoICRI GAGCTC 1 cut(s) 510
EcoT14I CCWWGG 1 cut(s) 426
EcoT22I ATGCAT 1 cut(s) 418
EcoT38I GRGCYC 3 cut(s) 208, 512, 592
ErhI CCWWGG 1 cut(s) 426
FaeI CATG 4 cut(s) 273, 376, 573, 665
FaqI GGGAC 1 cut(s) 581
FatI CATG 4 cut(s) 269, 372, 569, 661
FauNDI CATATG 1 cut(s) 286
FblI GTMKAC 1 cut(s) 120
Fnu4HI GCNGC 1 cut(s) 165
FokI GGATG 1 cut(s) 155
FriOI GRGCYC 3 cut(s) 208, 512, 592
Fsp4HI GCNGC 1 cut(s) 165
FspBI CTAG 5 cut(s) 86, 116, 392, 464, 593
GluI GCNGC 1 cut(s) 165
GsuI CTGGAG 1 cut(s) 496
HaeIII GGCC 1 cut(s) 40
HapII CCGG 3 cut(s) 37, 41, 615
HgaI GACGC 1 cut(s) 358
Hin1II CATG 4 cut(s) 273, 376, 573, 665
HinfI GANTC 3 cut(s) 323, 498, 516
HpaII CCGG 3 cut(s) 37, 41, 615
HphI GGTGA 3 cut(s) 13, 20, 26
Hpy166II GTNNAC 3 cut(s) 21, 121, 252
Hpy188I TCNGA 3 cut(s) 150, 210, 625
Hpy188III TCNNGA 2 cut(s) 172, 513
Hpy8I GTNNAC 3 cut(s) 21, 121, 252
Hpy99I CGWCG 1 cut(s) 14
HpyAV CCTTC 1 cut(s) 276
HpyCH4III ACNGT 1 cut(s) 505
HpyCH4V TGCA 4 cut(s) 167, 310, 403, 416
HpyF10VI GCNNNNNNNGC 1 cut(s) 422
HpyF3I CTNAG 4 cut(s) 32, 149, 225, 384
Hsp92II CATG 4 cut(s) 273, 376, 573, 665
KroI GCCGGC 1 cut(s) 36
KroNI GCCGGC 1 cut(s) 38
LmnI GCTCC 3 cut(s) 43, 211, 515
Lsp1109I GCAGC 1 cut(s) 151
LweI GCATC 3 cut(s) 133, 378, 546
MaeI CTAG 5 cut(s) 86, 116, 392, 464, 593
MaeIII GTNAC 2 cut(s) 361, 499
MboII GAAGA 1 cut(s) 187
MhlI GDGCHC 4 cut(s) 208, 512, 592, 615
MluCI AATT 1 cut(s) 618
MlyI GAGTC 2 cut(s) 317, 507
MnlI CCTC 4 cut(s) 195, 231, 652, 663
Mph1103I ATGCAT 1 cut(s) 418
MroNI GCCGGC 1 cut(s) 36
MseI TTAA 1 cut(s) 667
MslI CAYNNNNRTG 1 cut(s) 660
MspI CCGG 3 cut(s) 37, 41, 615
MspR9I CCNGG 1 cut(s) 615
Mva1269I GAATGC 1 cut(s) 51
MwoI GCNNNNNNNGC 1 cut(s) 422
NaeI GCCGGC 1 cut(s) 38
NciI CCSGG 1 cut(s) 615
NdeI CATATG 1 cut(s) 286
NgoMIV GCCGGC 1 cut(s) 36
NlaIII CATG 4 cut(s) 273, 376, 573, 665
NlaIV GGNNCC 2 cut(s) 45, 207
NmeAIII GCCGAG 2 cut(s) 72, 140
NmuCI GTSAC 1 cut(s) 499
NsiI ATGCAT 1 cut(s) 418
NspI RCATGY 1 cut(s) 573
PaeI GCATGC 1 cut(s) 573
PctI GAATGC 1 cut(s) 51
PdiI GCCGGC 1 cut(s) 38
PfeI GAWTC 1 cut(s) 516
PflMI CCANNNNNTGG 1 cut(s) 139
PkrI GCNGC 1 cut(s) 166
PleI GAGTC 2 cut(s) 317, 506
PpsI GAGTC 2 cut(s) 317, 506
PsiI TTATAA 1 cut(s) 408
Psp124BI GAGCTC 1 cut(s) 512
PspN4I GGNNCC 2 cut(s) 45, 207
RsaI GTAC 6 cut(s) 84, 230, 245, 251, 348, 651
RsaNI GTAC 6 cut(s) 83, 229, 244, 250, 347, 650
RseI CAYNNNNRTG 1 cut(s) 660
SacI GAGCTC 1 cut(s) 512
SaqAI TTAA 1 cut(s) 667
SatI GCNGC 1 cut(s) 165
ScaI AGTACT 1 cut(s) 230
SchI GAGTC 2 cut(s) 317, 507
ScrFI CCNGG 1 cut(s) 615
SduI GDGCHC 4 cut(s) 208, 512, 592, 615
SetI ASST 8 cut(s) 33, 129, 155, 226, 356, 432, 512, 655
SfaNI GCATC 3 cut(s) 133, 378, 546
SmiMI CAYNNNNRTG 1 cut(s) 660
SphI GCATGC 1 cut(s) 573
Sse9I AATT 1 cut(s) 618
SspMI CTAG 5 cut(s) 86, 116, 392, 464, 593
SstI GAGCTC 1 cut(s) 512
StyD4I CCNGG 1 cut(s) 613
StyI CCWWGG 1 cut(s) 426
TaaI ACNGT 1 cut(s) 505
TaqI TCGA 1 cut(s) 103
TasI AATT 1 cut(s) 618
TatI WGTACW 5 cut(s) 82, 228, 243, 249, 346
TfiI GAWTC 1 cut(s) 516
Tru1I TTAA 1 cut(s) 667
Tru9I TTAA 1 cut(s) 667
TscAI CASTG 2 cut(s) 144, 510
TseFI GTSAC 1 cut(s) 499
TseI GCWGC 1 cut(s) 164
Tsp45I GTSAC 1 cut(s) 499
TspDTI ATGAA 1 cut(s) 258
TspRI CASTG 2 cut(s) 144, 510
Van91I CCANNNNNTGG 1 cut(s) 139
XapI RAATTY 1 cut(s) 618
XceI RCATGY 1 cut(s) 573
XmiI GTMKAC 1 cut(s) 120
XspI CTAG 5 cut(s) 86, 116, 392, 464, 593
ZrmI AGTACT 1 cut(s) 230
Zsp2I ATGCAT 1 cut(s) 418
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.