FvH4_6g43551

Cyclin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0012469
Physical Location & Seq
Reverse (-)
33671830 .. 33673334
1505 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g43551.t1

Sequence Viewer

Length: 684 bp
ATGTTATCCGCCGGTGAGTTCACCAATCACCTTAGCCGGCCGGAGCCGAGCATTCCGAGAGTGCTGACCATACTATCTTTTGTACTAGAGAAGCTAGTAGCTCGAAATAATAGTCTAGTAGACGATCTGACCCAACCACTGGATGCTCTGAGCTGCGGCTCGGCTGCCATCGGAAAGAGGTTGAACCCGTTTCACGGCGTGAGGGCTCCGAGTATAAGCATCCCTAAGTACTTGGAGAGGCTGTACAAGTACACAGATTGTAGCCCTTCATGTTTTGTGGTAGGGTATGTGTATATTGACAGACTGGTGCATAAACACCCTGACTCGCTTGTGTTGTCCTTGAACGTACATAGGTTGCTGGTTACAAGCATCATGGTTGCTTCTAAGATGCTAGATGATGTGCATTACAACAATGCATTTTATGCCAAGGTTGGGGGAGTAAGCAATGCCGAATTGAACAGACTAGAAGTGGAGTTTCTTTTCCTACTGGATTTTGGAGTCACAGTCAGCTCCAGAGTATTTGAGAGCTATTGCTTTCACTTGGAAAAGGAAATGATGTTGAATGGGGCATGCCAAACAATTGAAAGGGCTTTAGTACTCCCCATTACAGATGTGGCTGATGTGCCTGAAATTTCTGAAAACACGCAGAGTTCCTCATCGGAATCTAAGAATCATGGTCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin

Protein Analysis

228

Amino Acids

25.22

Weight (kDa)

5.89

Isoelectric Point (pI)

40.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin PF08613 21 - 166 1.6e-39 Cyclin
Cyclin_N PF00134 75 - 166 1.8e-08 Cyclin, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G21870
fragaria_vesca FvH4_3g46120 FvH4_6g43551
malus_domestica MD09G1104900.v1.1 MD17G1092600.v1.1
prunus_persica Prupe.3G220600_v2.0.a1
pyrus_communis pycom09g02800
rosa_chinensis RchiOBHm_Chr2g0160131
rosa_laevigata RLG00000021198
rosa_multiflora Rmu_sc0002023.1_g000003
rosa_roxburghii Rroxscaffold_2G00090030
rosa_rugosa Rorug02G0481000 Rorug02G0481100
rosa_samantha Rh2BG560300 Rh2BG560400 Rh2CG530700 Rh2CG530800 Rh2DG569100
rosa_wichuraiana Rw2G045240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 139
AccI GTMKAC 1 cut(s) 120
AciI CCGC 2 cut(s) 9, 156
AcoI YGGCCR 1 cut(s) 38
AcsI RAATTY 1 cut(s) 630
AdeI CACNNNGTG 1 cut(s) 199
AfaI GTAC 6 cut(s) 84, 230, 245, 251, 348, 597
AfiI CCNNNNNNNGG 3 cut(s) 139, 194, 432
AgsI TTSAA 5 cut(s) 184, 343, 457, 562, 584
AluBI AGCT 5 cut(s) 94, 101, 153, 510, 528
AluI AGCT 5 cut(s) 94, 101, 153, 510, 528
AoxI GGCC 1 cut(s) 38
ApeKI GCWGC 2 cut(s) 153, 164
ApoI RAATTY 1 cut(s) 630
ArsI GACNNNNNNTTYG 2 cut(s) 97, 129
AsuHPI GGTGA 3 cut(s) 13, 20, 26
BanII GRGCYC 1 cut(s) 208
BbvI GCAGC 2 cut(s) 140, 151
BccI CCATC 1 cut(s) 176
BceAI ACGGC 1 cut(s) 211
BfaI CTAG 5 cut(s) 86, 95, 116, 392, 464
BisI GCNGC 3 cut(s) 154, 157, 165
BlsI GCNGC 3 cut(s) 155, 158, 166
BmcAI AGTACT 2 cut(s) 230, 597
BmiI GGNNCC 2 cut(s) 45, 207
BmsI GCATC 4 cut(s) 133, 228, 378, 378
BpmI CTGGAG 1 cut(s) 496
Bpu10I CCTNAGC 1 cut(s) 32
BsaJI CCNNGG 1 cut(s) 426
BsaXI ACNNNNNCTCC 4 cut(s) 227, 257, 489, 519
Bsc4I CCNNNNNNNGG 3 cut(s) 139, 194, 432
Bse118I RCCGGY 2 cut(s) 11, 36
Bse1I ACTGG 3 cut(s) 144, 309, 492
Bse3DI GCAATG 1 cut(s) 451
BseDI CCNNGG 1 cut(s) 426
BseGI GGATG 2 cut(s) 148, 219
BseLI CCNNNNNNNGG 3 cut(s) 139, 194, 432
BseMI GCAATG 1 cut(s) 451
BseMII CTCAG 1 cut(s) 140
BseNI ACTGG 3 cut(s) 144, 309, 492
BseX3I CGGCCG 1 cut(s) 38
BseXI GCAGC 2 cut(s) 140, 151
Bsh1285I CGRYCG 1 cut(s) 41
BshFI GGCC 1 cut(s) 40
BsiEI CGRYCG 1 cut(s) 41
BsiSI CCGG 3 cut(s) 12, 37, 41
BslI CCNNNNNNNGG 3 cut(s) 139, 194, 432
BsmI GAATGC 1 cut(s) 51
BsnI GGCC 1 cut(s) 40
Bsp1286I GDGCHC 1 cut(s) 208
Bsp1407I TGTACA 1 cut(s) 243
Bsp143I GATC 1 cut(s) 124
BspACI CCGC 2 cut(s) 9, 156
BspANI GGCC 1 cut(s) 40
BspCNI CTCAG 1 cut(s) 141
BspLI GGNNCC 2 cut(s) 45, 207
BsrDI GCAATG 1 cut(s) 451
BsrFI RCCGGY 2 cut(s) 11, 36
BsrGI TGTACA 1 cut(s) 243
BsrI ACTGG 3 cut(s) 144, 309, 492
BssAI RCCGGY 2 cut(s) 11, 36
BssECI CCNNGG 1 cut(s) 426
BssMI GATC 1 cut(s) 124
BssT1I CCWWGG 1 cut(s) 426
Bst4CI ACNGT 1 cut(s) 505
BstAPI GCANNNNNTGC 1 cut(s) 422
BstAUI TGTACA 1 cut(s) 243
BstC8I GCNNGC 2 cut(s) 38, 571
BstDEI CTNAG 5 cut(s) 32, 149, 225, 384, 666
BstF5I GGATG 2 cut(s) 148, 219
BstKTI GATC 1 cut(s) 127
BstMBI GATC 1 cut(s) 124
BstMCI CGRYCG 1 cut(s) 41
BstMWI GCNNNNNNNGC 1 cut(s) 422
BstNSI RCATGY 1 cut(s) 573
BstV1I GCAGC 2 cut(s) 140, 151
BstZI CGGCCG 1 cut(s) 38
BsuRI GGCC 1 cut(s) 40
BtsCI GGATG 2 cut(s) 148, 219
BtsIMutI CAGTG 1 cut(s) 137
Cac8I GCNNGC 2 cut(s) 38, 571
Cfr10I RCCGGY 2 cut(s) 11, 36
Csp6I GTAC 6 cut(s) 83, 229, 244, 250, 347, 596
CviAII CATG 4 cut(s) 270, 373, 570, 674
CviQI GTAC 6 cut(s) 83, 229, 244, 250, 347, 596
DdeI CTNAG 5 cut(s) 32, 149, 225, 384, 666
DpnI GATC 1 cut(s) 126
DpnII GATC 1 cut(s) 124
DraIII CACNNNGTG 1 cut(s) 199
EaeI YGGCCR 1 cut(s) 38
EagI CGGCCG 1 cut(s) 38
EclXI CGGCCG 1 cut(s) 38
Eco130I CCWWGG 1 cut(s) 426
Eco24I GRGCYC 1 cut(s) 208
Eco52I CGGCCG 1 cut(s) 38
EcoT14I CCWWGG 1 cut(s) 426
EcoT22I ATGCAT 1 cut(s) 418
EcoT38I GRGCYC 1 cut(s) 208
ErhI CCWWGG 1 cut(s) 426
FaeI CATG 4 cut(s) 273, 376, 573, 677
FatI CATG 4 cut(s) 269, 372, 569, 673
FblI GTMKAC 1 cut(s) 120
Fnu4HI GCNGC 3 cut(s) 154, 157, 165
FokI GGATG 2 cut(s) 155, 206
FriOI GRGCYC 1 cut(s) 208
Fsp4HI GCNGC 3 cut(s) 154, 157, 165
FspBI CTAG 5 cut(s) 86, 95, 116, 392, 464
GluI GCNGC 3 cut(s) 154, 157, 165
GsuI CTGGAG 1 cut(s) 496
HaeIII GGCC 1 cut(s) 40
HapII CCGG 3 cut(s) 12, 37, 41
Hin1II CATG 4 cut(s) 273, 376, 573, 677
HinfI GANTC 4 cut(s) 323, 498, 662, 670
HpaII CCGG 3 cut(s) 12, 37, 41
HphI GGTGA 3 cut(s) 13, 20, 26
Hpy166II GTNNAC 3 cut(s) 21, 121, 252
Hpy188I TCNGA 7 cut(s) 57, 129, 150, 173, 210, 637, 661
Hpy188III TCNNGA 1 cut(s) 513
Hpy8I GTNNAC 3 cut(s) 21, 121, 252
HpyAV CCTTC 1 cut(s) 276
HpyCH4III ACNGT 1 cut(s) 505
HpyCH4IV ACGT 1 cut(s) 345
HpyCH4V TGCA 3 cut(s) 310, 403, 416
HpyF10VI GCNNNNNNNGC 1 cut(s) 422
HpyF3I CTNAG 5 cut(s) 32, 149, 225, 384, 666
HpySE526I ACGT 1 cut(s) 345
Hsp92II CATG 4 cut(s) 273, 376, 573, 677
KroI GCCGGC 1 cut(s) 36
KroNI GCCGGC 1 cut(s) 38
Kzo9I GATC 1 cut(s) 124
LmnI GCTCC 3 cut(s) 43, 211, 515
Lsp1109I GCAGC 2 cut(s) 140, 151
LweI GCATC 4 cut(s) 133, 228, 378, 378
MaeI CTAG 5 cut(s) 86, 95, 116, 392, 464
MaeII ACGT 1 cut(s) 345
MaeIII GTNAC 2 cut(s) 361, 499
MalI GATC 1 cut(s) 126
MboI GATC 1 cut(s) 124
MfeI CAATTG 1 cut(s) 579
MhlI GDGCHC 1 cut(s) 208
MluCI AATT 3 cut(s) 452, 579, 630
MlyI GAGTC 2 cut(s) 317, 507
MnlI CCTC 4 cut(s) 171, 195, 231, 664
Mph1103I ATGCAT 1 cut(s) 418
MroNI GCCGGC 1 cut(s) 36
MspI CCGG 3 cut(s) 12, 37, 41
MunI CAATTG 1 cut(s) 579
Mva1269I GAATGC 1 cut(s) 51
MwoI GCNNNNNNNGC 1 cut(s) 422
NaeI GCCGGC 1 cut(s) 38
NdeII GATC 1 cut(s) 124
NgoMIV GCCGGC 1 cut(s) 36
NlaIII CATG 4 cut(s) 273, 376, 573, 677
NlaIV GGNNCC 2 cut(s) 45, 207
NmeAIII GCCGAG 2 cut(s) 72, 140
NmuCI GTSAC 1 cut(s) 499
NsiI ATGCAT 1 cut(s) 418
NspI RCATGY 1 cut(s) 573
PaeI GCATGC 1 cut(s) 573
PctI GAATGC 1 cut(s) 51
PdiI GCCGGC 1 cut(s) 38
PfeI GAWTC 2 cut(s) 662, 670
PflMI CCANNNNNTGG 1 cut(s) 139
PkrI GCNGC 3 cut(s) 155, 158, 166
PleI GAGTC 2 cut(s) 317, 506
PpsI GAGTC 2 cut(s) 317, 506
PspN4I GGNNCC 2 cut(s) 45, 207
RsaI GTAC 6 cut(s) 84, 230, 245, 251, 348, 597
RsaNI GTAC 6 cut(s) 83, 229, 244, 250, 347, 596
SatI GCNGC 3 cut(s) 154, 157, 165
Sau3AI GATC 1 cut(s) 124
ScaI AGTACT 2 cut(s) 230, 597
SchI GAGTC 2 cut(s) 317, 507
SduI GDGCHC 1 cut(s) 208
SfaNI GCATC 4 cut(s) 133, 228, 378, 378
SgrAI CRCCGGYG 1 cut(s) 11
SphI GCATGC 1 cut(s) 573
Sse9I AATT 3 cut(s) 452, 579, 630
SsiI CCGC 2 cut(s) 9, 156
SspMI CTAG 5 cut(s) 86, 95, 116, 392, 464
StyI CCWWGG 1 cut(s) 426
TaaI ACNGT 1 cut(s) 505
TaiI ACGT 1 cut(s) 348
TaqI TCGA 1 cut(s) 103
TasI AATT 3 cut(s) 452, 579, 630
TatI WGTACW 5 cut(s) 82, 228, 243, 249, 595
TauI GCSGC 1 cut(s) 159
TfiI GAWTC 2 cut(s) 662, 670
TscAI CASTG 1 cut(s) 144
TseFI GTSAC 1 cut(s) 499
TseI GCWGC 2 cut(s) 153, 164
Tsp45I GTSAC 1 cut(s) 499
TspDTI ATGAA 1 cut(s) 258
TspRI CASTG 1 cut(s) 144
Van91I CCANNNNNTGG 1 cut(s) 139
XapI RAATTY 1 cut(s) 630
XceI RCATGY 1 cut(s) 573
XcmI CCANNNNNNNNNTGG 1 cut(s) 610
XmiI GTMKAC 1 cut(s) 120
XspI CTAG 5 cut(s) 86, 95, 116, 392, 464
ZrmI AGTACT 2 cut(s) 230, 597
Zsp2I ATGCAT 1 cut(s) 418
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.