Prupe.3G220600_v2.0.a1

Cyclin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0012469
Physical Location & Seq
Reverse (-)
22144337 .. 22145905
1569 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G220600.1

Sequence Viewer

Length: 654 bp
ATGTTAGCCGCCGACGAGTTCACCAATCACCATGGCCGGCCGGAGCCGAGTATCCCGAGAGTGTTAACCATACTCTCTTTCGTGCTGGAGAAGTTGGTTGCACGAAATAACACGCTTGCAGATGGCCTGAGCCAGCAACTTGATGGACAGAGTTGTGGCTCGGCTGGGATTGGGAAGAGCTTGAATGTGTTTCATGGCGTGAGGGCACCAAGCATAAGCATACCCAAGTACTTGGAGAGGCTCTACAAGTACACGGATTGTAGCCCTTCATGTTTTGTGGTTGGGTATGTGTACATAGATAGGCTGCTTCATAAGCACCCCGACTCTCTTGTGCTGTCCTTGAATGTCCATAGATTGCTGGTCACAAGCGTTATGATTGCTTCCAAGATGCTAGATGATGTGCATTATAACAATGCATTTTATGCCCGGGTTGGCGGAGTAAGCAACGCTGAATTGAACAGACTAGAAGTGGAGTTGCTTTTCCTGCTGGATTTTGGTGTCATGGTGAGCTCTAGAGTTTTTGAGAGTTATTGCTTCCATTTAGAAAAAGAAATGATTCTCAATGGGGCATGCCAAAGGATTGAAAGGCCATTGTTAGTCCTCAGTGATGTGGCCGAAATACGGGAAAATTCTCAGAGTTCCTTACCACCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin

Protein Analysis

218

Amino Acids

24.22

Weight (kDa)

6.23

Isoelectric Point (pI)

40.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G21870
fragaria_vesca FvH4_3g46120 FvH4_6g43551
malus_domestica MD09G1104900.v1.1 MD17G1092600.v1.1
prunus_persica Prupe.3G220600_v2.0.a1
pyrus_communis pycom09g02800
rosa_chinensis RchiOBHm_Chr2g0160131
rosa_laevigata RLG00000021198
rosa_multiflora Rmu_sc0002023.1_g000003
rosa_roxburghii Rroxscaffold_2G00090030
rosa_rugosa Rorug02G0481000 Rorug02G0481100
rosa_samantha Rh2BG560300 Rh2BG560400 Rh2CG530700 Rh2CG530800 Rh2DG569100
rosa_wichuraiana Rw2G045240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 408
AccB1I GGYRCC 1 cut(s) 205
AciI CCGC 2 cut(s) 9, 435
AcoI YGGCCR 3 cut(s) 34, 38, 612
AcsI RAATTY 1 cut(s) 628
AfaI GTAC 3 cut(s) 230, 251, 293
AfiI CCNNNNNNNGG 1 cut(s) 621
AgsI TTSAA 4 cut(s) 184, 343, 457, 584
AluBI AGCT 2 cut(s) 180, 510
AluI AGCT 2 cut(s) 180, 510
Alw21I GWGCWC 1 cut(s) 512
Ama87I CYCGRG 2 cut(s) 55, 426
AoxI GGCC 5 cut(s) 34, 38, 124, 587, 612
ApeKI GCWGC 1 cut(s) 304
ApoI RAATTY 1 cut(s) 628
Asp700I GAANNNNTTC 1 cut(s) 555
AsuC2I CCSGG 2 cut(s) 427, 428
AsuHPI GGTGA 3 cut(s) 13, 20, 517
AvaI CYCGRG 2 cut(s) 55, 426
BaeGI GKGCMC 1 cut(s) 208
BanI GGYRCC 1 cut(s) 205
BanII GRGCYC 1 cut(s) 512
Bbv12I GWGCWC 1 cut(s) 512
BbvI GCAGC 1 cut(s) 291
BccI CCATC 2 cut(s) 116, 137
BciVI GTATCC 1 cut(s) 62
BcnI CCSGG 2 cut(s) 427, 428
BfaI CTAG 3 cut(s) 392, 464, 513
BfuI GTATCC 1 cut(s) 62
BisI GCNGC 2 cut(s) 9, 305
BlsI GCNGC 2 cut(s) 10, 306
BmcAI AGTACT 1 cut(s) 230
Bme1390I CCNGG 2 cut(s) 427, 428
BmeT110I CYCGRG 2 cut(s) 55, 426
BmiI GGNNCC 2 cut(s) 45, 207
BmrFI CCNGG 2 cut(s) 427, 428
BmsI GCATC 1 cut(s) 378
BpmI CTGGAG 1 cut(s) 107
Bpu10I CCTNAGC 1 cut(s) 128
BpuMI CCSGG 2 cut(s) 427, 428
BsaJI CCNNGG 2 cut(s) 31, 426
Bsc4I CCNNNNNNNGG 1 cut(s) 621
Bse118I RCCGGY 1 cut(s) 36
BseDI CCNNGG 2 cut(s) 31, 426
BseLI CCNNNNNNNGG 1 cut(s) 621
BseMII CTCAG 3 cut(s) 119, 616, 647
BseSI GKGCMC 1 cut(s) 208
BseX3I CGGCCG 1 cut(s) 38
BseXI GCAGC 1 cut(s) 291
BseYI CCCAGC 1 cut(s) 164
Bsh1285I CGRYCG 1 cut(s) 41
BshFI GGCC 5 cut(s) 36, 40, 126, 589, 614
BshNI GGYRCC 1 cut(s) 205
BsiEI CGRYCG 1 cut(s) 41
BsiHKAI GWGCWC 1 cut(s) 512
BsiHKCI CYCGRG 2 cut(s) 55, 426
BsiSI CCGG 3 cut(s) 37, 41, 427
BslI CCNNNNNNNGG 1 cut(s) 621
BsnI GGCC 5 cut(s) 36, 40, 126, 589, 614
BsoBI CYCGRG 2 cut(s) 55, 426
Bsp1286I GDGCHC 2 cut(s) 208, 512
Bsp1407I TGTACA 1 cut(s) 291
Bsp19I CCATGG 1 cut(s) 31
BspACI CCGC 2 cut(s) 9, 435
BspANI GGCC 5 cut(s) 36, 40, 126, 589, 614
BspCNI CTCAG 3 cut(s) 120, 615, 646
BspLI GGNNCC 2 cut(s) 45, 207
BspQI GCTCTTC 1 cut(s) 170
BspT107I GGYRCC 1 cut(s) 205
BsrFI RCCGGY 1 cut(s) 36
BsrGI TGTACA 1 cut(s) 291
BssAI RCCGGY 1 cut(s) 36
BssECI CCNNGG 2 cut(s) 31, 426
BssT1I CCWWGG 1 cut(s) 31
Bst6I CTCTTC 1 cut(s) 170
BstAPI GCANNNNNTGC 1 cut(s) 422
BstAUI TGTACA 1 cut(s) 291
BstC8I GCNNGC 4 cut(s) 38, 117, 134, 571
BstDEI CTNAG 4 cut(s) 128, 602, 633, 651
BstDSI CCRYGG 1 cut(s) 31
BstMCI CGRYCG 1 cut(s) 41
BstMWI GCNNNNNNNGC 4 cut(s) 313, 422, 441, 484
BstNSI RCATGY 1 cut(s) 573
BstSCI CCNGG 2 cut(s) 425, 426
BstSLI GKGCMC 1 cut(s) 208
BstV1I GCAGC 1 cut(s) 291
BstXI CCANNNNNNTGG 1 cut(s) 232
BstZI CGGCCG 1 cut(s) 38
BsuI GTATCC 1 cut(s) 62
BsuRI GGCC 5 cut(s) 36, 40, 126, 589, 614
BtgI CCRYGG 1 cut(s) 31
BtsIMutI CAGTG 1 cut(s) 610
Cac8I GCNNGC 4 cut(s) 38, 117, 134, 571
Cfr10I RCCGGY 1 cut(s) 36
Cfr9I CCCGGG 1 cut(s) 426
Csp6I GTAC 3 cut(s) 229, 250, 292
CviAII CATG 5 cut(s) 32, 194, 270, 502, 570
CviQI GTAC 3 cut(s) 229, 250, 292
DdeI CTNAG 4 cut(s) 128, 602, 633, 651
EaeI YGGCCR 3 cut(s) 34, 38, 612
EagI CGGCCG 1 cut(s) 38
Eam1104I CTCTTC 1 cut(s) 170
EarI CTCTTC 1 cut(s) 170
EciI GGCGGA 1 cut(s) 450
Ecl136II GAGCTC 1 cut(s) 510
EclXI CGGCCG 1 cut(s) 38
Eco130I CCWWGG 1 cut(s) 31
Eco24I GRGCYC 1 cut(s) 512
Eco52I CGGCCG 1 cut(s) 38
Eco53kI GAGCTC 1 cut(s) 510
Eco88I CYCGRG 2 cut(s) 55, 426
EcoICRI GAGCTC 1 cut(s) 510
EcoT14I CCWWGG 1 cut(s) 31
EcoT22I ATGCAT 1 cut(s) 418
EcoT38I GRGCYC 1 cut(s) 512
ErhI CCWWGG 1 cut(s) 31
FaeI CATG 5 cut(s) 35, 197, 273, 505, 573
FatI CATG 5 cut(s) 31, 193, 269, 501, 569
Fnu4HI GCNGC 2 cut(s) 9, 305
FriOI GRGCYC 1 cut(s) 512
FseI GGCCGGCC 1 cut(s) 40
Fsp4HI GCNGC 2 cut(s) 9, 305
FspBI CTAG 3 cut(s) 392, 464, 513
GluI GCNGC 2 cut(s) 9, 305
GsaI CCCAGC 1 cut(s) 168
GsuI CTGGAG 1 cut(s) 107
HaeIII GGCC 5 cut(s) 36, 40, 126, 589, 614
HapII CCGG 3 cut(s) 37, 41, 427
Hin1II CATG 5 cut(s) 35, 197, 273, 505, 573
HincII GTYRAC 1 cut(s) 66
HindII GTYRAC 1 cut(s) 66
HinfI GANTC 2 cut(s) 323, 556
HpaI GTTAAC 1 cut(s) 66
HpaII CCGG 3 cut(s) 37, 41, 427
HphI GGTGA 3 cut(s) 13, 20, 517
Hpy166II GTNNAC 4 cut(s) 21, 66, 252, 292
Hpy188I TCNGA 1 cut(s) 636
Hpy188III TCNNGA 2 cut(s) 55, 513
Hpy8I GTNNAC 4 cut(s) 21, 66, 252, 292
Hpy99I CGWCG 1 cut(s) 17
HpyAV CCTTC 1 cut(s) 276
HpyCH4V TGCA 4 cut(s) 101, 119, 403, 416
HpyF10VI GCNNNNNNNGC 4 cut(s) 313, 422, 441, 484
HpyF3I CTNAG 4 cut(s) 128, 602, 633, 651
Hsp92II CATG 5 cut(s) 35, 197, 273, 505, 573
KroI GCCGGC 1 cut(s) 36
KroNI GCCGGC 1 cut(s) 38
KspAI GTTAAC 1 cut(s) 66
LguI GCTCTTC 1 cut(s) 170
LmnI GCTCC 1 cut(s) 43
Lsp1109I GCAGC 1 cut(s) 291
LweI GCATC 1 cut(s) 378
MaeI CTAG 3 cut(s) 392, 464, 513
MaeIII GTNAC 1 cut(s) 361
MboII GAAGA 1 cut(s) 187
MhlI GDGCHC 2 cut(s) 208, 512
MluCI AATT 2 cut(s) 452, 628
MlyI GAGTC 1 cut(s) 317
MnlI CCTC 3 cut(s) 195, 231, 611
Mph1103I ATGCAT 1 cut(s) 418
MroNI GCCGGC 1 cut(s) 36
MroXI GAANNNNTTC 1 cut(s) 555
MseI TTAA 1 cut(s) 65
MspI CCGG 3 cut(s) 37, 41, 427
MspR9I CCNGG 2 cut(s) 427, 428
MwoI GCNNNNNNNGC 4 cut(s) 313, 422, 441, 484
NaeI GCCGGC 1 cut(s) 38
NciI CCSGG 2 cut(s) 427, 428
NcoI CCATGG 1 cut(s) 31
NgoMIV GCCGGC 1 cut(s) 36
NlaIII CATG 5 cut(s) 35, 197, 273, 505, 573
NlaIV GGNNCC 2 cut(s) 45, 207
NmeAIII GCCGAG 2 cut(s) 72, 140
NmuCI GTSAC 1 cut(s) 361
NsiI ATGCAT 1 cut(s) 418
NspI RCATGY 1 cut(s) 573
PaeI GCATGC 1 cut(s) 573
PciSI GCTCTTC 1 cut(s) 170
PdiI GCCGGC 1 cut(s) 38
PdmI GAANNNNTTC 1 cut(s) 555
PfeI GAWTC 1 cut(s) 556
PkrI GCNGC 2 cut(s) 10, 306
PleI GAGTC 1 cut(s) 317
PpsI GAGTC 1 cut(s) 317
PsiI TTATAA 1 cut(s) 408
Psp124BI GAGCTC 1 cut(s) 512
PspFI CCCAGC 1 cut(s) 164
PspN4I GGNNCC 2 cut(s) 45, 207
RigI GGCCGGCC 1 cut(s) 40
RsaI GTAC 3 cut(s) 230, 251, 293
RsaNI GTAC 3 cut(s) 229, 250, 292
SacI GAGCTC 1 cut(s) 512
SapI GCTCTTC 1 cut(s) 170
SaqAI TTAA 1 cut(s) 65
SatI GCNGC 2 cut(s) 9, 305
ScaI AGTACT 1 cut(s) 230
SchI GAGTC 1 cut(s) 317
ScrFI CCNGG 2 cut(s) 427, 428
SduI GDGCHC 2 cut(s) 208, 512
SetI ASST 3 cut(s) 182, 512, 652
SfaNI GCATC 1 cut(s) 378
SmaI CCCGGG 1 cut(s) 428
SphI GCATGC 1 cut(s) 573
Sse9I AATT 2 cut(s) 452, 628
SsiI CCGC 2 cut(s) 9, 435
SspMI CTAG 3 cut(s) 392, 464, 513
SstI GAGCTC 1 cut(s) 512
StyD4I CCNGG 2 cut(s) 425, 426
StyI CCWWGG 1 cut(s) 31
TasI AATT 2 cut(s) 452, 628
TatI WGTACW 3 cut(s) 228, 249, 291
TauI GCSGC 1 cut(s) 11
TfiI GAWTC 1 cut(s) 556
Tru1I TTAA 1 cut(s) 65
Tru9I TTAA 1 cut(s) 65
TscAI CASTG 1 cut(s) 610
TseFI GTSAC 1 cut(s) 361
TseI GCWGC 1 cut(s) 304
Tsp45I GTSAC 1 cut(s) 361
TspDTI ATGAA 3 cut(s) 182, 258, 299
TspGWI ACGGA 1 cut(s) 269
TspMI CCCGGG 1 cut(s) 426
TspRI CASTG 1 cut(s) 610
XapI RAATTY 1 cut(s) 628
XbaI TCTAGA 1 cut(s) 512
XceI RCATGY 1 cut(s) 573
XcmI CCANNNNNNNNNTGG 1 cut(s) 140
XmaI CCCGGG 1 cut(s) 426
XmnI GAANNNNTTC 1 cut(s) 555
XspI CTAG 3 cut(s) 392, 464, 513
ZrmI AGTACT 1 cut(s) 230
Zsp2I ATGCAT 1 cut(s) 418
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.