AT3G21880

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0006580
Physical Location & Seq
Forward (+)
7706257 .. 7708346
2090 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G21880.2

Sequence Viewer

Length: 1095 bp
ATGGAGCCAAAGTGTGACCATTGTGCAACCTCGCAAGCATTGATTTACTGCAAATCCGATTTGGCTAAACTATGCCTAAACTGCGACGTCCATGTACACTCTGCGAATCCTCTGTCTCACAGGCACATACGCTCTTTGATCTGCGAGAAATGCTTCTCACAGCCAGCCGCAATCCGCTGTCTCGACGAGAAGGTTTCATACTGCCAAGGATGTCATTGGCACGAAAGCAACTGTTCGGAGTTAGGACACAGAGTTCAGAGCTTGAATCCTTTCTCTGGTTGTCCTTCTCCTACAGATTTTAACAGAATGTGGTCTTCAATTCTTGAACCTCCTGTCTCCGGCTTGCTTAGTCCGTTCGTTGGTTCTTTTCCCTTGAATGATCTCAACAATACCATGTTCGATACCGCTTATTCCATGGTACCACACAACATCAGTTACACTCAGAATTTCAGTGATAATTTGTCTTTCTTTTCCACGGAATCTAAGGGATATCCTGATATGGTTCTTAAACTTGAAGAAGGAGAAGAAGATCTATGTGAAGGGCTTAACTTGGATGATGCACCATTAAACTTTGACGTAGGAGATGATATTATCGGATGTTCATCAGAAGTACACATAGAACCGGACCATACGGTACCAAATTGCCTATTGATTGACAAGACTAACACATCCAGCTTTACCGGCTCCAACTTTACTGTAGACAAGGCTCTAGAGGCATCGCCACCAGGTCAGCAAATGAACATCAACACTGGACTTCAGCTTCCTCTATCACCTGTCTTGTTCGGACAAATCCATCCATCTCTTAACATCACTGGTGAAAACAATGCAGCTGATTACCAGGATTGTGGGATGTCTCCAGGGTTTATAATGAGTGAAGCGCCATGGGAAACGAATTTTGAAGTTAGTTGTCCACAAGCAAGAAACGAGGCTAAGTTGAGATACAAGGAGAAGAAATTAAAGCGCTCTTTTGGGAAACAGATTCGATATGCATCTCGCAAAGCAAGAGCTGACACGAGGAAAAGAGTGAAAGGAAGATTTGTGAAAGCTGGTGACAGTTATGATTATGATCCATCATCACCGACGACGAACAATTGA

Protein Analysis

364

Amino Acids

40.47

Weight (kDa)

5.46

Isoelectric Point (pI)

55.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCT PF06203 311 - 353 1e-16 CCT motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 866
AatII GACGTC 1 cut(s) 90
Acc65I GGTACC 2 cut(s) 418, 634
AccB1I GGYRCC 2 cut(s) 418, 634
AccI GTMKAC 1 cut(s) 699
AciI CCGC 3 cut(s) 168, 175, 405
AclWI GGATC 1 cut(s) 1061
AcsI RAATTY 2 cut(s) 445, 892
AcuI CTGAAG 1 cut(s) 740
AcyI GRCGYC 1 cut(s) 87
AfaI GTAC 4 cut(s) 96, 420, 612, 636
AfeI AGCGCT 1 cut(s) 962
AfiI CCNNNNNNNGG 3 cut(s) 275, 338, 359
AgsI TTSAA 6 cut(s) 265, 318, 326, 376, 515, 899
AjnI CCWGG 3 cut(s) 724, 837, 856
AloI GAACNNNNNNTCC 2 cut(s) 237, 269
AluBI AGCT 6 cut(s) 261, 675, 760, 830, 1007, 1046
AluI AGCT 6 cut(s) 261, 675, 760, 830, 1007, 1046
Alw26I GTCTC 4 cut(s) 120, 185, 340, 858
AlwI GGATC 1 cut(s) 1061
Aor51HI AGCGCT 1 cut(s) 962
ApeKI GCWGC 1 cut(s) 827
ApoI RAATTY 2 cut(s) 445, 892
ArsI GACNNNNNNTTYG 2 cut(s) 98, 130
Asp700I GAANNNNTTC 2 cut(s) 152, 269
Asp718I GGTACC 2 cut(s) 418, 634
AspLEI GCGC 2 cut(s) 880, 963
AspS9I GGNCC 1 cut(s) 625
AsuHPI GGTGA 4 cut(s) 762, 827, 1061, 1068
AvaII GGWCC 1 cut(s) 625
BanI GGYRCC 2 cut(s) 418, 634
BarI GAAGNNNNNNTAC 2 cut(s) 182, 214
BauI CACGAG 1 cut(s) 1012
BbsI GAAGAC 1 cut(s) 306
BbvI GCAGC 1 cut(s) 839
BccI CCATC 3 cut(s) 801, 805, 1078
BciT130I CCWGG 3 cut(s) 726, 839, 858
BcoDI GTCTC 4 cut(s) 120, 185, 340, 858
BfaI CTAG 1 cut(s) 710
BfmI CTRYAG 2 cut(s) 291, 696
BfoI RGCGCY 2 cut(s) 881, 964
BglII AGATCT 1 cut(s) 529
BisI GCNGC 2 cut(s) 168, 828
BlsI GCNGC 2 cut(s) 169, 829
Bme1390I CCNGG 3 cut(s) 726, 839, 858
Bme18I GGWCC 1 cut(s) 625
BmgT120I GGNCC 1 cut(s) 625
BmiI GGNNCC 4 cut(s) 6, 420, 636, 685
BmrFI CCNGG 3 cut(s) 726, 839, 858
BmsI GCATC 3 cut(s) 547, 725, 998
BpiI GAAGAC 1 cut(s) 306
BpmI CTGGAG 1 cut(s) 840
BsaBI GATNNNNATC 3 cut(s) 601, 988, 1065
BsaHI GRCGYC 1 cut(s) 87
BsaJI CCNNGG 5 cut(s) 205, 414, 474, 857, 881
BsaWI WCCGGW 1 cut(s) 622
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 3 cut(s) 275, 338, 359
Bse118I RCCGGY 1 cut(s) 680
Bse1I ACTGG 2 cut(s) 754, 817
Bse8I GATNNNNATC 3 cut(s) 601, 988, 1065
BseBI CCWGG 3 cut(s) 726, 839, 858
BseDI CCNNGG 5 cut(s) 205, 414, 474, 857, 881
BseGI GGATG 6 cut(s) 215, 559, 602, 668, 793, 855
BseJI GATNNNNATC 3 cut(s) 601, 988, 1065
BseLI CCNNNNNNNGG 3 cut(s) 275, 338, 359
BseMII CTCAG 1 cut(s) 455
BseNI ACTGG 2 cut(s) 754, 817
BseXI GCAGC 1 cut(s) 839
BshNI GGYRCC 2 cut(s) 418, 634
BsiSI CCGG 3 cut(s) 339, 623, 681
BslI CCNNNNNNNGG 3 cut(s) 275, 338, 359
BsmAI GTCTC 4 cut(s) 120, 185, 340, 858
Bsp1407I TGTACA 1 cut(s) 94
Bsp143I GATC 4 cut(s) 138, 379, 529, 1066
Bsp19I CCATGG 2 cut(s) 414, 881
BspACI CCGC 3 cut(s) 168, 175, 405
BspCNI CTCAG 1 cut(s) 454
BspLI GGNNCC 4 cut(s) 6, 420, 636, 685
BspPI GGATC 1 cut(s) 1061
BspT107I GGYRCC 2 cut(s) 418, 634
BsrFI RCCGGY 1 cut(s) 680
BsrGI TGTACA 1 cut(s) 94
BsrI ACTGG 2 cut(s) 754, 817
BssAI RCCGGY 1 cut(s) 680
BssECI CCNNGG 5 cut(s) 205, 414, 474, 857, 881
BssMI GATC 4 cut(s) 138, 379, 529, 1066
BssNI GRCGYC 1 cut(s) 87
BssSI CACGAG 1 cut(s) 1012
BssT1I CCWWGG 3 cut(s) 205, 414, 881
Bst2BI CACGAG 1 cut(s) 1012
Bst2UI CCWGG 3 cut(s) 726, 839, 858
Bst4CI ACNGT 4 cut(s) 233, 634, 697, 1055
BstACI GRCGYC 1 cut(s) 87
BstAUI TGTACA 1 cut(s) 94
BstC8I GCNNGC 3 cut(s) 36, 165, 344
BstDEI CTNAG 4 cut(s) 347, 441, 483, 930
BstDSI CCRYGG 3 cut(s) 414, 474, 881
BstF5I GGATG 6 cut(s) 215, 559, 602, 668, 793, 855
BstH2I RGCGCY 2 cut(s) 881, 964
BstHHI GCGC 2 cut(s) 880, 963
BstKTI GATC 4 cut(s) 141, 382, 532, 1069
BstMAI GTCTC 4 cut(s) 120, 185, 340, 858
BstMBI GATC 4 cut(s) 138, 379, 529, 1066
BstMWI GCNNNNNNNGC 4 cut(s) 81, 150, 681, 713
BstNI CCWGG 3 cut(s) 726, 839, 858
BstSCI CCNGG 3 cut(s) 724, 837, 856
BstSFI CTRYAG 2 cut(s) 291, 696
BstV1I GCAGC 1 cut(s) 839
BstV2I GAAGAC 1 cut(s) 306
BstX2I RGATCY 1 cut(s) 529
BstXI CCANNNNNNTGG 1 cut(s) 845
BstYI RGATCY 1 cut(s) 529
BtgI CCRYGG 3 cut(s) 414, 474, 881
BtgZI GCGATG 1 cut(s) 702
BtsCI GGATG 6 cut(s) 215, 559, 602, 668, 793, 855
BtsIMutI CAGTG 3 cut(s) 457, 747, 810
Cac8I GCNNGC 3 cut(s) 36, 165, 344
CfoI GCGC 2 cut(s) 880, 963
Cfr10I RCCGGY 1 cut(s) 680
Cfr13I GGNCC 1 cut(s) 625
CsiI ACCWGGT 1 cut(s) 724
Csp6I GTAC 4 cut(s) 95, 419, 611, 635
CviAII CATG 4 cut(s) 92, 394, 415, 882
CviQI GTAC 4 cut(s) 95, 419, 611, 635
DdeI CTNAG 4 cut(s) 347, 441, 483, 930
DpnI GATC 4 cut(s) 140, 381, 531, 1068
DpnII GATC 4 cut(s) 138, 379, 529, 1066
Eco130I CCWWGG 3 cut(s) 205, 414, 881
Eco32I GATATC 1 cut(s) 491
Eco47I GGWCC 1 cut(s) 625
Eco47III AGCGCT 1 cut(s) 962
Eco57I CTGAAG 1 cut(s) 740
EcoRII CCWGG 3 cut(s) 724, 837, 856
EcoRV GATATC 1 cut(s) 491
EcoT14I CCWWGG 3 cut(s) 205, 414, 881
EcoT22I ATGCAT 1 cut(s) 991
ErhI CCWWGG 3 cut(s) 205, 414, 881
FaeI CATG 4 cut(s) 95, 397, 418, 885
FatI CATG 4 cut(s) 91, 393, 414, 881
FblI GTMKAC 1 cut(s) 699
Fnu4HI GCNGC 2 cut(s) 168, 828
FokI GGATG 6 cut(s) 222, 566, 609, 655, 780, 862
Fsp4HI GCNGC 2 cut(s) 168, 828
FspBI CTAG 1 cut(s) 710
GlaI GCGC 2 cut(s) 879, 962
GluI GCNGC 2 cut(s) 168, 828
GsuI CTGGAG 1 cut(s) 840
HaeII RGCGCY 2 cut(s) 881, 964
HapII CCGG 3 cut(s) 339, 623, 681
HhaI GCGC 2 cut(s) 880, 963
Hin1I GRCGYC 1 cut(s) 87
Hin1II CATG 4 cut(s) 95, 397, 418, 885
Hin6I GCGC 2 cut(s) 878, 961
HinP1I GCGC 2 cut(s) 878, 961
HinfI GANTC 4 cut(s) 106, 265, 479, 979
HpaII CCGG 3 cut(s) 339, 623, 681
HphI GGTGA 4 cut(s) 762, 827, 1061, 1068
Hpy166II GTNNAC 4 cut(s) 97, 613, 700, 911
Hpy188I TCNGA 7 cut(s) 58, 238, 258, 444, 596, 607, 785
Hpy188III TCNNGA 4 cut(s) 182, 323, 494, 710
Hpy8I GTNNAC 4 cut(s) 97, 613, 700, 911
Hpy99I CGWCG 4 cut(s) 89, 188, 1084, 1087
HpyAV CCTTC 4 cut(s) 184, 294, 512, 533
HpyCH4III ACNGT 4 cut(s) 233, 634, 697, 1055
HpyCH4IV ACGT 2 cut(s) 87, 576
HpyCH4V TGCA 5 cut(s) 26, 51, 560, 827, 989
HpyF10VI GCNNNNNNNGC 4 cut(s) 81, 150, 681, 713
HpyF3I CTNAG 4 cut(s) 347, 441, 483, 930
HpySE526I ACGT 2 cut(s) 87, 576
Hsp92I GRCGYC 1 cut(s) 87
Hsp92II CATG 4 cut(s) 95, 397, 418, 885
HspAI GCGC 2 cut(s) 878, 961
KpnI GGTACC 2 cut(s) 422, 638
Kzo9I GATC 4 cut(s) 138, 379, 529, 1066
LmnI GCTCC 2 cut(s) 4, 689
Lsp1109I GCAGC 1 cut(s) 839
LweI GCATC 3 cut(s) 547, 725, 998
MabI ACCWGGT 1 cut(s) 724
MaeI CTAG 1 cut(s) 710
MaeII ACGT 2 cut(s) 87, 576
MaeIII GTNAC 3 cut(s) 14, 434, 1049
MalI GATC 4 cut(s) 140, 381, 531, 1068
MboI GATC 4 cut(s) 138, 379, 529, 1066
MboII GAAGA 6 cut(s) 306, 527, 536, 539, 961, 1044
MfeI CAATTG 1 cut(s) 1090
MflI RGATCY 1 cut(s) 529
MluCI AATT 7 cut(s) 318, 445, 457, 640, 892, 953, 1090
MmeI TCCRAC 1 cut(s) 711
MnlI CCTC 7 cut(s) 40, 120, 339, 706, 774, 919, 1008
Mph1103I ATGCAT 1 cut(s) 991
MroXI GAANNNNTTC 2 cut(s) 152, 269
MseI TTAA 6 cut(s) 300, 507, 546, 566, 804, 956
MspA1I CMGCKG 2 cut(s) 177, 830
MspI CCGG 3 cut(s) 339, 623, 681
MspR9I CCNGG 3 cut(s) 726, 839, 858
MunI CAATTG 1 cut(s) 1090
MvaI CCWGG 3 cut(s) 726, 839, 858
MwoI GCNNNNNNNGC 4 cut(s) 81, 150, 681, 713
NcoI CCATGG 2 cut(s) 414, 881
NdeII GATC 4 cut(s) 138, 379, 529, 1066
NlaIII CATG 4 cut(s) 95, 397, 418, 885
NlaIV GGNNCC 4 cut(s) 6, 420, 636, 685
NmuCI GTSAC 2 cut(s) 14, 1049
NsiI ATGCAT 1 cut(s) 991
PdmI GAANNNNTTC 2 cut(s) 152, 269
PfeI GAWTC 4 cut(s) 106, 265, 479, 979
PkrI GCNGC 2 cut(s) 169, 829
PsiI TTATAA 1 cut(s) 866
Psp6I CCWGG 3 cut(s) 724, 837, 856
PspGI CCWGG 3 cut(s) 724, 837, 856
PspN4I GGNNCC 4 cut(s) 6, 420, 636, 685
PspPI GGNCC 1 cut(s) 625
PsuI RGATCY 1 cut(s) 529
PvuII CAGCTG 1 cut(s) 830
RsaI GTAC 4 cut(s) 96, 420, 612, 636
RsaNI GTAC 4 cut(s) 95, 419, 611, 635
SaqAI TTAA 6 cut(s) 300, 507, 546, 566, 804, 956
SatI GCNGC 2 cut(s) 168, 828
Sau3AI GATC 4 cut(s) 138, 379, 529, 1066
Sau96I GGNCC 1 cut(s) 625
ScrFI CCNGG 3 cut(s) 726, 839, 858
SexAI ACCWGGT 1 cut(s) 724
SfaNI GCATC 3 cut(s) 547, 725, 998
SfcI CTRYAG 2 cut(s) 291, 696
SinI GGWCC 1 cut(s) 625
Sse9I AATT 7 cut(s) 318, 445, 457, 640, 892, 953, 1090
SsiI CCGC 3 cut(s) 168, 175, 405
SspMI CTAG 1 cut(s) 710
StyD4I CCNGG 3 cut(s) 724, 837, 856
StyI CCWWGG 3 cut(s) 205, 414, 881
TaaI ACNGT 4 cut(s) 233, 634, 697, 1055
TaiI ACGT 2 cut(s) 90, 579
TaqI TCGA 3 cut(s) 183, 399, 982
TasI AATT 7 cut(s) 318, 445, 457, 640, 892, 953, 1090
TatI WGTACW 2 cut(s) 94, 610
TauI GCSGC 1 cut(s) 170
TfiI GAWTC 4 cut(s) 106, 265, 479, 979
Tru1I TTAA 6 cut(s) 300, 507, 546, 566, 804, 956
Tru9I TTAA 6 cut(s) 300, 507, 546, 566, 804, 956
TscAI CASTG 3 cut(s) 457, 754, 817
TseFI GTSAC 2 cut(s) 14, 1049
TseI GCWGC 1 cut(s) 827
Tsp45I GTSAC 2 cut(s) 14, 1049
TspDTI ATGAA 3 cut(s) 186, 591, 752
TspGWI ACGGA 2 cut(s) 342, 491
TspRI CASTG 3 cut(s) 457, 754, 817
VpaK11BI GGWCC 1 cut(s) 625
XapI RAATTY 2 cut(s) 445, 892
XbaI TCTAGA 1 cut(s) 709
XmiI GTMKAC 1 cut(s) 699
XmnI GAANNNNTTC 2 cut(s) 152, 269
XspI CTAG 1 cut(s) 710
ZraI GACGTC 1 cut(s) 88
Zsp2I ATGCAT 1 cut(s) 991
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.