Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0006580

Physical Location & Seq

Genomic Coordinates Reverse (-)

7635600 .. 7640517

Gene Structure 4918 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1104700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1371 bp

ATGGAGCCTCTATGTGAGTTTTGTGGGATGGCAACGGCAGTTGTCTACTGTAAAGCGGATATGGCTCGCCTTTGCTTGTACTGTGATGGATGCGTGCACTCAGCTAACGCTTTGTCACGCCAGCACCCTCGTTTCCTTCTATGCGACAAGTGCAATGCTCAGCCTGCTATCATCCGATGTATGGATGAGAAGACGTCCTTATGTCAGAGCTGTGATCACTGGAGTCATAACAATACTAGTATTAATGGAATTACTACTGCTTCAGCAGGAGGTGGGATGGGGGGACATAGGACACATGCATTGACTTGTTACACGGGTTGCCCTAGTTTGTCTGAGTTTTCGAGAATTTGGTCGGTTCTTGAAGGATCTTCTTCTTCAGGTGGTAATTTTGAAAGTAGTAACTGGGATCAGTCACTTGGATCAGCTGTAGTGGCAATAAATCAGGATCAGACTAATTACATTAGTAATAATGGTTTGGAAGGTAGAGATAATAATGACAGATCATTTGGGGTGGTTGTCACTGCTGGCAAGTTGAATGGAGGATCATCATTAGATCAGTCTTGTGGCCGCAAGTTTGATCCTTGGATAGCCAGTAGTTCAACTTTGATTCCATCGAATCCGAATTGCACTCCTCACGGGAAAGATCAAACACCTTTCTTGCCTCAGGAGTCTAGCCTGCTAAAGGGTTGTACCAATTTTAAAGATCTTGCAATTCAGGATAGCAATGTCCTATGTGATGGCCTCAATGTTGATGATGTTCCACTGAACTTTGAAAATCCTGATGGGATATTCTGTCCACAAGTTCCTTCTCCATACCAGTTTGAGGATAGAGAAATGGATTGCTTGTTAATGGAGAAAAGCTTATCAGTCACTGAGTCTATTGGTCCTAATGAGAATGCTGCACAGGCATCATCATCAGGACAACAAGACCGTGCAGCATTTCAATCCTCTTGTGGATCAGATACTGTTATGTCAGGCATGAATGGTAGTGCAAACTGCTTACTCATGAATCCTACTTGCAGCAGAAGCATCAACCTTGGATTTCCTGCCGCCCAACAAGTTCATCCGAGCATGTCACTTACACTGTCCAGCATCAGCAGGGAAAGCAATCCTGATTACCAAGATTGTGAATTGTCACCAGTCTTTCTAACCGGAGAGCCTTGGGAGTCAACTTTGGAGGCTAGCAGTCCACAAGCAAGGGACAAGGCTAAGATGAGATACAAGGAGAAAAAGAAAACTCGCACGTTTGGTAAACAAATAAGATATGCCTCTAGGAAGGCCAGAGCTGATACCAGAAAACGCGTCAAAGGAAGATTTGTTAAAGCTGGCGAAGAATATGATTACGATCCCCTTGTGACAAGGAGCTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009892 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022603 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0060688 GO:0065007 GO:0080090 GO:0140110 GO:1900618 GO:1903506 GO:1905428 GO:2000026 GO:2000028 GO:2000032 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT zf-B_box

Protein Analysis

457

Amino Acids

49.64

Weight (kDa)

5.7

Isoelectric Point (pI)

46.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCT	PF06203	400 - 442	4.6e-17	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21880 AT3G21880 AT3G21880 AT4G15250
fragaria_vesca	FvH4_6g43570
malus_domestica	MD09G1104700.v1.1
prunus_persica	Prupe.3G220900_v2.0.a1
pyrus_communis	pycom09g02770 pycom17g08960 pycom17g08970 pycom17g08990
rosa_chinensis	RchiOBHm_Chr2g0160151
rosa_laevigata	RLG00000021200
rosa_multiflora	Rmu_sc0000403.1_g000012
rosa_roxburghii	Rroxscaffold_2G00090010
rosa_rugosa	Rorug02G0481400.1 Rorug02G0481500.1 Rorug02G0481600 Rorug02G0481700 Rorug02G0481800 Rorug02G0481900
rosa_samantha	Rh2AG547400 Rh2BG560600 Rh2CG531000 Rh2DG569300
rosa_wichuraiana	Rw2G045260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	197
AccI	GTMKAC	1 cut(s)	45
AccII	CGCG	1 cut(s)	1302
AciI	CCGC	3 cut(s)	56, 568, 1050
AclWI	GGATC	8 cut(s)	373, 414, 427, 453, 550, 572, 964, 1340
AcoI	YGGCCR	1 cut(s)	565
AcsI	RAATTY	1 cut(s)	345
AcuI	CTGAAG	2 cut(s)	246, 360
AcyI	GRCGYC	1 cut(s)	194
AfaI	GTAC	2 cut(s)	80, 691
AfiI	CCNNNNNNNGG	3 cut(s)	181, 682, 823
AflIII	ACRYGT	1 cut(s)	1300
AgsI	TTSAA	6 cut(s)	362, 392, 535, 600, 773, 944
AhlI	ACTAGT	1 cut(s)	236
AluBI	AGCT	7 cut(s)	104, 210, 425, 861, 1286, 1325, 1365
AluI	AGCT	7 cut(s)	104, 210, 425, 861, 1286, 1325, 1365
Alw21I	GWGCWC	1 cut(s)	99
Alw44I	GTGCAC	1 cut(s)	95
AlwI	GGATC	8 cut(s)	373, 414, 427, 453, 550, 572, 964, 1340
AlwNI	CAGNNNCTG	2 cut(s)	872, 965
AoxI	GGCC	3 cut(s)	565, 739, 1278
ApaLI	GTGCAC	1 cut(s)	95
ApeKI	GCWGC	3 cut(s)	899, 935, 1020
ApoI	RAATTY	1 cut(s)	345
ArsI	GACNNNNNNTTYG	2 cut(s)	488, 520
AseI	ATTAAT	1 cut(s)	243
AspS9I	GGNCC	1 cut(s)	884
AsuHPI	GGTGA	1 cut(s)	1128
AsuNHI	GCTAGC	1 cut(s)	1181
AvaII	GGWCC	1 cut(s)	884
AxyI	CCTNAGG	1 cut(s)	663
BaeGI	GKGCMC	1 cut(s)	99
BbsI	GAAGAC	1 cut(s)	197
Bbv12I	GWGCWC	1 cut(s)	99
BbvI	GCAGC	3 cut(s)	886, 947, 1032
BccI	CCATC	6 cut(s)	22, 80, 271, 619, 731, 776
BceAI	ACGGC	1 cut(s)	51
BclI	TGATCA	1 cut(s)	214
BcuI	ACTAGT	1 cut(s)	236
BfaI	CTAG	5 cut(s)	237, 324, 672, 1182, 1272
BfmI	CTRYAG	1 cut(s)	426
BglII	AGATCT	1 cut(s)	703
BisI	GCNGC	5 cut(s)	568, 900, 936, 1021, 1050
BlpI	GCTNAGC	1 cut(s)	159
BlsI	GCNGC	5 cut(s)	569, 901, 937, 1022, 1051
Bme18I	GGWCC	1 cut(s)	884
BmgT120I	GGNCC	1 cut(s)	884
BmiI	GGNNCC	1 cut(s)	6
BmrI	ACTGGG	1 cut(s)	412
BmsI	GCATC	4 cut(s)	80, 917, 1038, 1101
BmtI	GCTAGC	1 cut(s)	1185
BmuI	ACTGGG	1 cut(s)	412
BpiI	GAAGAC	1 cut(s)	197
BpmI	CTGGAG	1 cut(s)	241
Bpu1102I	GCTNAGC	1 cut(s)	159
BsaBI	GATNNNNATC	1 cut(s)	1344
BsaHI	GRCGYC	1 cut(s)	194
BsaJI	CCNNGG	3 cut(s)	581, 1036, 1160
BsaWI	WCCGGW	1 cut(s)	1151
Bsc4I	CCNNNNNNNGG	3 cut(s)	181, 682, 823
Bse1I	ACTGG	5 cut(s)	224, 407, 591, 817, 1139
Bse21I	CCTNAGG	1 cut(s)	663
Bse3DI	GCAATG	2 cut(s)	160, 730
Bse8I	GATNNNNATC	1 cut(s)	1344
BseDI	CCNNGG	3 cut(s)	581, 1036, 1160
BseGI	GGATG	6 cut(s)	33, 95, 171, 190, 282, 1063
BseJI	GATNNNNATC	1 cut(s)	1344
BseLI	CCNNNNNNNGG	3 cut(s)	181, 682, 823
BseMI	GCAATG	2 cut(s)	160, 730
BseMII	CTCAG	5 cut(s)	114, 173, 324, 677, 864
BseNI	ACTGG	5 cut(s)	224, 407, 591, 817, 1139
BseRI	GAGGAG	1 cut(s)	621
BseSI	GKGCMC	1 cut(s)	99
BseXI	GCAGC	3 cut(s)	886, 947, 1032
BsgI	GTGCAG	2 cut(s)	885, 954
Bsh1236I	CGCG	1 cut(s)	1302
BshFI	GGCC	3 cut(s)	567, 741, 1280
BsiHKAI	GWGCWC	1 cut(s)	99
BsiSI	CCGG	1 cut(s)	1152
BslFI	GGGAC	2 cut(s)	297, 1214
BslI	CCNNNNNNNGG	3 cut(s)	181, 682, 823
BsmFI	GGGAC	2 cut(s)	297, 1214
BsmI	GAATGC	1 cut(s)	901
BsnI	GGCC	3 cut(s)	567, 741, 1280
Bsp1286I	GDGCHC	1 cut(s)	99
Bsp1720I	GCTNAGC	1 cut(s)	159
BspACI	CCGC	3 cut(s)	56, 568, 1050
BspANI	GGCC	3 cut(s)	567, 741, 1280
BspCNI	CTCAG	5 cut(s)	113, 172, 325, 676, 865
BspFNI	CGCG	1 cut(s)	1302
BspHI	TCATGA	1 cut(s)	1005
BspLI	GGNNCC	1 cut(s)	6
BspOI	GCTAGC	1 cut(s)	1185
BspPI	GGATC	8 cut(s)	373, 414, 427, 453, 550, 572, 964, 1340
BsrDI	GCAATG	2 cut(s)	160, 730
BsrI	ACTGG	5 cut(s)	224, 407, 591, 817, 1139
BssECI	CCNNGG	3 cut(s)	581, 1036, 1160
BssNI	GRCGYC	1 cut(s)	194
BssT1I	CCWWGG	3 cut(s)	581, 1036, 1160
Bst4CI	ACNGT	5 cut(s)	50, 83, 932, 967, 1086
BstACI	GRCGYC	1 cut(s)	194
BstC8I	GCNNGC	8 cut(s)	67, 95, 122, 165, 526, 677, 1183, 1327
BstDEI	CTNAG	6 cut(s)	100, 159, 333, 663, 873, 1209
BstENI	CCTNNNNNAGG	1 cut(s)	680
BstF5I	GGATG	6 cut(s)	33, 95, 171, 190, 282, 1063
BstFNI	CGCG	1 cut(s)	1302
BstMWI	GCNNNNNNNGC	7 cut(s)	62, 150, 164, 431, 905, 1026, 1104
BstNSI	RCATGY	2 cut(s)	299, 1075
BstSFI	CTRYAG	1 cut(s)	426
BstSLI	GKGCMC	1 cut(s)	99
BstUI	CGCG	1 cut(s)	1302
BstV1I	GCAGC	3 cut(s)	886, 947, 1032
BstV2I	GAAGAC	1 cut(s)	197
BstX2I	RGATCY	2 cut(s)	365, 703
BstYI	RGATCY	2 cut(s)	365, 703
Bsu36I	CCTNAGG	1 cut(s)	663
BsuRI	GGCC	3 cut(s)	567, 741, 1280
BtsCI	GGATG	6 cut(s)	33, 95, 171, 190, 282, 1063
BtsI	GCAGTG	1 cut(s)	519
BtsIMutI	CAGTG	5 cut(s)	217, 519, 761, 870, 1082
Cac8I	GCNNGC	8 cut(s)	67, 95, 122, 165, 526, 677, 1183, 1327
CaiI	CAGNNNCTG	2 cut(s)	872, 965
CciI	TCATGA	1 cut(s)	1005
Cfr13I	GGNCC	1 cut(s)	884
CseI	GACGC	1 cut(s)	1291
Csp6I	GTAC	2 cut(s)	79, 690
CviAII	CATG	4 cut(s)	296, 979, 1006, 1072
CviQI	GTAC	2 cut(s)	79, 690
DdeI	CTNAG	6 cut(s)	100, 159, 333, 663, 873, 1209
DraI	TTTAAA	1 cut(s)	700
EaeI	YGGCCR	1 cut(s)	565
Eco130I	CCWWGG	3 cut(s)	581, 1036, 1160
Eco47I	GGWCC	1 cut(s)	884
Eco57I	CTGAAG	2 cut(s)	246, 360
Eco81I	CCTNAGG	1 cut(s)	663
EcoNI	CCTNNNNNAGG	1 cut(s)	680
EcoT14I	CCWWGG	3 cut(s)	581, 1036, 1160
EcoT22I	ATGCAT	1 cut(s)	301
ErhI	CCWWGG	3 cut(s)	581, 1036, 1160
FaeI	CATG	4 cut(s)	299, 982, 1009, 1075
FalI	AAGNNNNNCTT	2 cut(s)	182, 214
FaqI	GGGAC	2 cut(s)	297, 1214
FatI	CATG	4 cut(s)	295, 978, 1005, 1071
FbaI	TGATCA	1 cut(s)	214
FblI	GTMKAC	1 cut(s)	45
Fnu4HI	GCNGC	5 cut(s)	568, 900, 936, 1021, 1050
FokI	GGATG	6 cut(s)	40, 102, 158, 197, 289, 1050
Fsp4HI	GCNGC	5 cut(s)	568, 900, 936, 1021, 1050
FspBI	CTAG	5 cut(s)	237, 324, 672, 1182, 1272
GluI	GCNGC	5 cut(s)	568, 900, 936, 1021, 1050
GsuI	CTGGAG	1 cut(s)	241
HaeIII	GGCC	3 cut(s)	567, 741, 1280
HapII	CCGG	1 cut(s)	1152
HgaI	GACGC	1 cut(s)	1291
Hin1I	GRCGYC	1 cut(s)	194
Hin1II	CATG	4 cut(s)	299, 982, 1009, 1075
HincII	GTYRAC	1 cut(s)	1170
HindII	GTYRAC	1 cut(s)	1170
HindIII	AAGCTT	1 cut(s)	859
HinfI	GANTC	7 cut(s)	223, 607, 616, 668, 875, 1009, 1166
HpaII	CCGG	1 cut(s)	1152
HphI	GGTGA	1 cut(s)	1128
Hpy166II	GTNNAC	6 cut(s)	46, 97, 797, 1170, 1190, 1253
Hpy188I	TCNGA	7 cut(s)	176, 207, 334, 450, 621, 961, 1068
Hpy188III	TCNNGA	9 cut(s)	342, 359, 443, 665, 716, 779, 918, 1006, 1112
Hpy8I	GTNNAC	6 cut(s)	46, 97, 797, 1170, 1190, 1253
HpyAV	CCTTC	5 cut(s)	146, 356, 473, 816, 1270
HpyCH4III	ACNGT	5 cut(s)	50, 83, 932, 967, 1086
HpyCH4IV	ACGT	2 cut(s)	194, 1244
HpyCH4V	TGCA	9 cut(s)	97, 153, 299, 627, 710, 902, 935, 992, 1020
HpyF10VI	GCNNNNNNNGC	7 cut(s)	62, 150, 164, 431, 905, 1026, 1104
HpyF3I	CTNAG	6 cut(s)	100, 159, 333, 663, 873, 1209
HpySE526I	ACGT	2 cut(s)	194, 1244
Hsp92I	GRCGYC	1 cut(s)	194
Hsp92II	CATG	4 cut(s)	299, 982, 1009, 1075
Ksp22I	TGATCA	1 cut(s)	214
LmnI	GCTCC	2 cut(s)	4, 1362
Lsp1109I	GCAGC	3 cut(s)	886, 947, 1032
LweI	GCATC	4 cut(s)	80, 917, 1038, 1101
MaeI	CTAG	5 cut(s)	237, 324, 672, 1182, 1272
MaeII	ACGT	2 cut(s)	194, 1244
MaeIII	GTNAC	9 cut(s)	114, 308, 398, 411, 517, 868, 1074, 1134, 1354
MboII	GAAGA	6 cut(s)	202, 360, 363, 366, 1323, 1343
MflI	RGATCY	2 cut(s)	365, 703
MhlI	GDGCHC	1 cut(s)	99
MluCI	AATT	8 cut(s)	249, 345, 385, 454, 622, 694, 711, 1130
MluI	ACGCGT	1 cut(s)	1300
MlyI	GAGTC	4 cut(s)	232, 677, 884, 1175
Mph1103I	ATGCAT	1 cut(s)	301
MseI	TTAA	4 cut(s)	243, 699, 848, 1320
MspA1I	CMGCKG	1 cut(s)	425
MspI	CCGG	1 cut(s)	1152
Mva1269I	GAATGC	1 cut(s)	901
MvnI	CGCG	1 cut(s)	1302
MwoI	GCNNNNNNNGC	7 cut(s)	62, 150, 164, 431, 905, 1026, 1104
NheI	GCTAGC	1 cut(s)	1181
NlaIII	CATG	4 cut(s)	299, 982, 1009, 1075
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	7 cut(s)	114, 411, 517, 868, 1074, 1134, 1354
NsiI	ATGCAT	1 cut(s)	301
NspI	RCATGY	2 cut(s)	299, 1075
PagI	TCATGA	1 cut(s)	1005
PctI	GAATGC	1 cut(s)	901
PfeI	GAWTC	3 cut(s)	607, 616, 1009
PkrI	GCNGC	5 cut(s)	569, 901, 937, 1022, 1051
PleI	GAGTC	4 cut(s)	231, 676, 883, 1174
PpsI	GAGTC	4 cut(s)	231, 676, 883, 1174
PshBI	ATTAAT	1 cut(s)	243
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	884
PstNI	CAGNNNCTG	2 cut(s)	872, 965
PsuI	RGATCY	2 cut(s)	365, 703
PvuII	CAGCTG	1 cut(s)	425
RsaI	GTAC	2 cut(s)	80, 691
RsaNI	GTAC	2 cut(s)	79, 690
SaqAI	TTAA	4 cut(s)	243, 699, 848, 1320
SatI	GCNGC	5 cut(s)	568, 900, 936, 1021, 1050
Sau96I	GGNCC	1 cut(s)	884
SchI	GAGTC	4 cut(s)	232, 677, 884, 1175
SduI	GDGCHC	1 cut(s)	99
SfaNI	GCATC	4 cut(s)	80, 917, 1038, 1101
SfcI	CTRYAG	1 cut(s)	426
SinI	GGWCC	1 cut(s)	884
SpeI	ACTAGT	1 cut(s)	236
Sse9I	AATT	8 cut(s)	249, 345, 385, 454, 622, 694, 711, 1130
SsiI	CCGC	3 cut(s)	56, 568, 1050
SspMI	CTAG	5 cut(s)	237, 324, 672, 1182, 1272
StyI	CCWWGG	3 cut(s)	581, 1036, 1160
TaaI	ACNGT	5 cut(s)	50, 83, 932, 967, 1086
TaiI	ACGT	2 cut(s)	197, 1247
TaqI	TCGA	2 cut(s)	341, 614
TasI	AATT	8 cut(s)	249, 345, 385, 454, 622, 694, 711, 1130
TatI	WGTACW	1 cut(s)	78
TauI	GCSGC	2 cut(s)	570, 1052
TfiI	GAWTC	3 cut(s)	607, 616, 1009
Tru1I	TTAA	4 cut(s)	243, 699, 848, 1320
Tru9I	TTAA	4 cut(s)	243, 699, 848, 1320
TscAI	CASTG	5 cut(s)	224, 526, 768, 877, 1089
TseFI	GTSAC	7 cut(s)	114, 411, 517, 868, 1074, 1134, 1354
TseI	GCWGC	3 cut(s)	899, 935, 1020
Tsp45I	GTSAC	7 cut(s)	114, 411, 517, 868, 1074, 1134, 1354
TspDTI	ATGAA	3 cut(s)	995, 1022, 1052
TspRI	CASTG	5 cut(s)	224, 526, 768, 877, 1089
VneI	GTGCAC	1 cut(s)	95
VpaK11BI	GGWCC	1 cut(s)	884
VspI	ATTAAT	1 cut(s)	243
XagI	CCTNNNNNAGG	1 cut(s)	680
XapI	RAATTY	1 cut(s)	345
XceI	RCATGY	2 cut(s)	299, 1075
XmiI	GTMKAC	1 cut(s)	45
XspI	CTAG	5 cut(s)	237, 324, 672, 1182, 1272
ZraI	GACGTC	1 cut(s)	195
Zsp2I	ATGCAT	1 cut(s)	301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.