Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006580

Physical Location & Seq

Genomic Coordinates Forward (+)

61190105 .. 61190734

Gene Structure 630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0481900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGCCGAAAGGAATTGAGAAGCTGTCTTCTCTTCAAGTGCTAAAAGGCTTTGTGATTGAAGATTTGAAAAAAAAACCTCCCTGCAGAATTAGCTATCTTGCCCAGCTGAGGCATTTAAAGCGGCTCAGTATATCCATGAATGGTCTGGCTGTATTTGAAAATGGGGAGTTCCACAATTTAAAGCATATTGCATCTCTCCGCCACCTCAAACTGTCATGGGGAATGGTTTCTCGAAAATTGAAAGTAAAAGTTGCCTCCCAGTCCTTGGAGTTCTCTAACTTCTCTTTTCCGCCAGATTTAGAAAAATTGGAACTTGAAGGCATCCCTCAAGCACATGTACCAGAATGGTTGAACCCGTTCCAGCTCAAGAATTTAAAGAAGCTCTACTATATAAGGGGTGGGGAACTTGATAGCTTGGATCATGCAGAGACTGACAAGTGGGCAGTTGAAATCTTGCGTCTCAAGTACTTGAGGAAATTGAAAATAGAATTTAAAAAGTTGAAGGAAGAGTTTCCTCATCTGCGATACCTGGAGAAAATCCAATGTCTTGAAATGGTAACAGGGCCGCAGCCTAAATGTGATGAAGACATTGTCTGGAGTACTGACGCTGACGCTGGAGCCTATATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009892 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022603 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0060688 GO:0065007 GO:0080090 GO:0140110 GO:1900618 GO:1903506 GO:1905428 GO:2000026 GO:2000028 GO:2000032 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT zf-B_box

Protein Analysis

209

Amino Acids

24.25

Weight (kDa)

9.19

Isoelectric Point (pI)

33.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	1 - 128	1.5e-09	Leucine-rich repeat region
LRR_R13L1-DRL21	PF25019	33 - 163	1.3e-08	R13L1/DRL21 LRRs

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21880 AT3G21880 AT3G21880 AT4G15250
fragaria_vesca	FvH4_6g43570
malus_domestica	MD09G1104700.v1.1
prunus_persica	Prupe.3G220900_v2.0.a1
pyrus_communis	pycom09g02770 pycom17g08960 pycom17g08970 pycom17g08990
rosa_chinensis	RchiOBHm_Chr2g0160151
rosa_laevigata	RLG00000021200
rosa_multiflora	Rmu_sc0000403.1_g000012
rosa_roxburghii	Rroxscaffold_2G00090010
rosa_rugosa	Rorug02G0481400.1 Rorug02G0481500.1 Rorug02G0481600 Rorug02G0481700 Rorug02G0481800 Rorug02G0481900
rosa_samantha	Rh2AG547400 Rh2BG560600 Rh2CG531000 Rh2DG569300
rosa_wichuraiana	Rw2G045260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	265
AciI	CCGC	4 cut(s)	121, 199, 290, 566
AclWI	GGATC	1 cut(s)	426
AcsI	RAATTY	2 cut(s)	370, 488
AfaI	GTAC	3 cut(s)	339, 467, 601
AfiI	CCNNNNNNNGG	2 cut(s)	108, 265
AflIII	ACRYGT	1 cut(s)	334
AjnI	CCWGG	1 cut(s)	528
AluBI	AGCT	6 cut(s)	22, 93, 106, 364, 382, 414
AluI	AGCT	6 cut(s)	22, 93, 106, 364, 382, 414
Alw26I	GTCTC	2 cut(s)	422, 464
AlwI	GGATC	1 cut(s)	426
AlwNI	CAGNNNCTG	1 cut(s)	431
AoxI	GGCC	1 cut(s)	563
ApeKI	GCWGC	1 cut(s)	568
ApoI	RAATTY	2 cut(s)	370, 488
Asp700I	GAANNNNTTC	3 cut(s)	226, 356, 510
AspS9I	GGNCC	1 cut(s)	563
BbsI	GAAGAC	2 cut(s)	18, 591
BbvCI	CCTCAGC	1 cut(s)	107
BbvI	GCAGC	1 cut(s)	580
BciT130I	CCWGG	1 cut(s)	530
BcoDI	GTCTC	2 cut(s)	422, 464
BfmI	CTRYAG	1 cut(s)	82
BisI	GCNGC	3 cut(s)	122, 566, 569
BlsI	GCNGC	3 cut(s)	123, 567, 570
BmcAI	AGTACT	2 cut(s)	467, 601
Bme1390I	CCNGG	1 cut(s)	530
BmgT120I	GGNCC	1 cut(s)	563
BmiI	GGNNCC	1 cut(s)	619
BmrFI	CCNGG	1 cut(s)	530
BmrI	ACTGGG	1 cut(s)	253
BmsI	GCATC	2 cut(s)	200, 330
BmuI	ACTGGG	1 cut(s)	253
BpiI	GAAGAC	2 cut(s)	18, 591
BpmI	CTGGAG	2 cut(s)	551, 616
Bpu10I	CCTNAGC	1 cut(s)	107
BpuEI	CTTGAG	4 cut(s)	312, 350, 446, 490
BsaJI	CCNNGG	1 cut(s)	264
Bsc4I	CCNNNNNNNGG	2 cut(s)	108, 265
Bse1I	ACTGG	1 cut(s)	259
BseBI	CCWGG	1 cut(s)	530
BseDI	CCNNGG	1 cut(s)	264
BseGI	GGATG	1 cut(s)	321
BseLI	CCNNNNNNNGG	2 cut(s)	108, 265
BseMII	CTCAG	2 cut(s)	98, 139
BseNI	ACTGG	1 cut(s)	259
BseXI	GCAGC	1 cut(s)	580
BseYI	CCCAGC	1 cut(s)	102
BshFI	GGCC	1 cut(s)	565
BslI	CCNNNNNNNGG	2 cut(s)	108, 265
BsmAI	GTCTC	2 cut(s)	422, 464
BsmBI	CGTCTC	1 cut(s)	464
BsnI	GGCC	1 cut(s)	565
Bsp143I	GATC	1 cut(s)	418
BspACI	CCGC	4 cut(s)	121, 199, 290, 566
BspANI	GGCC	1 cut(s)	565
BspCNI	CTCAG	2 cut(s)	99, 138
BspLI	GGNNCC	1 cut(s)	619
BspMAI	CTGCAG	1 cut(s)	86
BspPI	GGATC	1 cut(s)	426
BsrI	ACTGG	1 cut(s)	259
BssECI	CCNNGG	1 cut(s)	264
BssMI	GATC	1 cut(s)	418
BssT1I	CCWWGG	1 cut(s)	264
Bst2UI	CCWGG	1 cut(s)	530
Bst4CI	ACNGT	1 cut(s)	213
Bst6I	CTCTTC	2 cut(s)	36, 501
BstDEI	CTNAG	2 cut(s)	107, 125
BstF5I	GGATG	1 cut(s)	321
BstKTI	GATC	1 cut(s)	421
BstMAI	GTCTC	2 cut(s)	422, 464
BstMBI	GATC	1 cut(s)	418
BstMWI	GCNNNNNNNGC	2 cut(s)	90, 118
BstNI	CCWGG	1 cut(s)	530
BstNSI	RCATGY	1 cut(s)	338
BstSCI	CCNGG	1 cut(s)	528
BstSFI	CTRYAG	1 cut(s)	82
BstV1I	GCAGC	1 cut(s)	580
BstV2I	GAAGAC	2 cut(s)	18, 591
BsuRI	GGCC	1 cut(s)	565
BtsCI	GGATG	1 cut(s)	321
CaiI	CAGNNNCTG	1 cut(s)	431
Cfr13I	GGNCC	1 cut(s)	563
CseI	GACGC	3 cut(s)	446, 614, 620
Csp6I	GTAC	3 cut(s)	338, 466, 600
CviAII	CATG	4 cut(s)	136, 216, 335, 422
CviQI	GTAC	3 cut(s)	338, 466, 600
DdeI	CTNAG	2 cut(s)	107, 125
DpnI	GATC	1 cut(s)	420
DpnII	GATC	1 cut(s)	418
DraI	TTTAAA	4 cut(s)	117, 180, 375, 493
Eam1104I	CTCTTC	2 cut(s)	36, 501
EarI	CTCTTC	2 cut(s)	36, 501
EciI	GGCGGA	2 cut(s)	188, 279
Eco130I	CCWWGG	1 cut(s)	264
EcoRII	CCWGG	1 cut(s)	528
EcoT14I	CCWWGG	1 cut(s)	264
ErhI	CCWWGG	1 cut(s)	264
Esp3I	CGTCTC	1 cut(s)	464
FaeI	CATG	4 cut(s)	139, 219, 338, 425
FaiI	YATR	9 cut(s)	131, 137, 186, 217, 336, 390, 392, 423, 624
FatI	CATG	4 cut(s)	135, 215, 334, 421
Fnu4HI	GCNGC	3 cut(s)	122, 566, 569
FokI	GGATG	1 cut(s)	308
Fsp4HI	GCNGC	3 cut(s)	122, 566, 569
GluI	GCNGC	3 cut(s)	122, 566, 569
GsaI	CCCAGC	1 cut(s)	106
GsuI	CTGGAG	2 cut(s)	551, 616
HaeIII	GGCC	1 cut(s)	565
HgaI	GACGC	3 cut(s)	446, 614, 620
Hin1II	CATG	4 cut(s)	139, 219, 338, 425
Hpy188III	TCNNGA	4 cut(s)	231, 367, 548, 595
HpyAV	CCTTC	2 cut(s)	311, 496
HpyCH4III	ACNGT	1 cut(s)	213
HpyCH4V	TGCA	3 cut(s)	84, 191, 425
HpyF10VI	GCNNNNNNNGC	2 cut(s)	90, 118
HpyF3I	CTNAG	2 cut(s)	107, 125
Hsp92II	CATG	4 cut(s)	139, 219, 338, 425
Kzo9I	GATC	1 cut(s)	418
LmnI	GCTCC	1 cut(s)	617
Lsp1109I	GCAGC	1 cut(s)	580
LweI	GCATC	2 cut(s)	200, 330
MaeIII	GTNAC	1 cut(s)	556
MalI	GATC	1 cut(s)	420
MboI	GATC	1 cut(s)	418
MboII	GAAGA	5 cut(s)	18, 23, 71, 518, 596
MluCI	AATT	8 cut(s)	12, 87, 175, 236, 305, 370, 476, 488
MnlI	CCTC	7 cut(s)	87, 102, 215, 265, 336, 465, 525
MroXI	GAANNNNTTC	3 cut(s)	226, 356, 510
MseI	TTAA	4 cut(s)	116, 179, 374, 492
MspA1I	CMGCKG	1 cut(s)	106
MspR9I	CCNGG	1 cut(s)	530
MvaI	CCWGG	1 cut(s)	530
MwoI	GCNNNNNNNGC	2 cut(s)	90, 118
NdeII	GATC	1 cut(s)	418
NlaIII	CATG	4 cut(s)	139, 219, 338, 425
NlaIV	GGNNCC	1 cut(s)	619
NspI	RCATGY	1 cut(s)	338
PciI	ACATGT	1 cut(s)	334
PdmI	GAANNNNTTC	3 cut(s)	226, 356, 510
PflFI	GACNNNGTC	1 cut(s)	590
PflMI	CCANNNNNTGG	1 cut(s)	265
PkrI	GCNGC	3 cut(s)	123, 567, 570
PscI	ACATGT	1 cut(s)	334
Psp6I	CCWGG	1 cut(s)	528
PspFI	CCCAGC	1 cut(s)	102
PspGI	CCWGG	1 cut(s)	528
PspN4I	GGNNCC	1 cut(s)	619
PspPI	GGNCC	1 cut(s)	563
PstI	CTGCAG	1 cut(s)	86
PstNI	CAGNNNCTG	1 cut(s)	431
PsyI	GACNNNGTC	1 cut(s)	590
PvuII	CAGCTG	1 cut(s)	106
RsaI	GTAC	3 cut(s)	339, 467, 601
RsaNI	GTAC	3 cut(s)	338, 466, 600
SaqAI	TTAA	4 cut(s)	116, 179, 374, 492
SatI	GCNGC	3 cut(s)	122, 566, 569
Sau3AI	GATC	1 cut(s)	418
Sau96I	GGNCC	1 cut(s)	563
ScaI	AGTACT	2 cut(s)	467, 601
ScrFI	CCNGG	1 cut(s)	530
SetI	ASST	9 cut(s)	24, 79, 95, 108, 207, 366, 384, 416, 531
SfaNI	GCATC	2 cut(s)	200, 330
SfcI	CTRYAG	1 cut(s)	82
SmlI	CTYRAG	4 cut(s)	327, 365, 461, 469
SmoI	CTYRAG	4 cut(s)	327, 365, 461, 469
Sse9I	AATT	8 cut(s)	12, 87, 175, 236, 305, 370, 476, 488
SsiI	CCGC	4 cut(s)	121, 199, 290, 566
StyD4I	CCNGG	1 cut(s)	528
StyI	CCWWGG	1 cut(s)	264
TaaI	ACNGT	1 cut(s)	213
TaqI	TCGA	1 cut(s)	232
TasI	AATT	8 cut(s)	12, 87, 175, 236, 305, 370, 476, 488
TatI	WGTACW	2 cut(s)	465, 599
TauI	GCSGC	2 cut(s)	124, 568
Tru1I	TTAA	4 cut(s)	116, 179, 374, 492
Tru9I	TTAA	4 cut(s)	116, 179, 374, 492
TseI	GCWGC	1 cut(s)	568
TspDTI	ATGAA	2 cut(s)	152, 597
Tth111I	GACNNNGTC	1 cut(s)	590
Van91I	CCANNNNNTGG	1 cut(s)	265
XapI	RAATTY	2 cut(s)	370, 488
XceI	RCATGY	1 cut(s)	338
XcmI	CCANNNNNNNNNTGG	1 cut(s)	142
XmnI	GAANNNNTTC	3 cut(s)	226, 356, 510
ZrmI	AGTACT	2 cut(s)	467, 601

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.