Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000403.1

Orthogroup ID

OG0006580

Physical Location & Seq

Genomic Coordinates Reverse (-)

48747 .. 50117

Gene Structure 1371 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000403.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

atggctcgcctttgcttaaactgtgatggatctgtacactcagccaatgcgttagcgcgaaggcactcacgttggtttctatgtgataagtgcaatgatcagcctgcaacagttcgatgcctggatgagaacatgtccttgtgccaaagttgtgagtggaatcacaataatggggttacaggaatggggcaccgtaaccaagcaataagttgctatacgggctgtccgtcgttgtctgagatttcgagaatttggtctgcggtccttgaagggggttcagcttctggtggttttggtggcagtgcttgggagtcacttgggggttcggtgatgccaaagaatgagaataattgcattagtaactgtttggagcgtagagatagtgacgcatcttcgtttggggtagtgagtgctggcaagttgaatgaagtactagcagagtctaattgtactcccaagtttgagccgtggatggccccatctgctatgattccatcaaatccgaactgcatccagccacaatgcaaagatcaagcaccattcttgcctcaggagtcgagccagatgccaaagggttcttcaaattttaaagatctaggaattcaggatggcaatgatctatgtgaaggtctcaacatggatgatgttccactagacgttgaaaatgacgatgagctatttagctgctcacaaggtccttccagatactcctttgaggatggagagttggactgtctattaatggaccagaaaaacttatcagtcaccgagtctaatggtcctcacagtgacaatgctatacaacaggcatcaccatcaaggcaacaagagtgtaccgtgggatttcactcatcctgtgtgtcagatagtgtgatgcccccagtgatgaatgctggtagcactgtaaactgcagcctgctcatgaatcctagttgcagcagaaacatcaatctggagggattaattaatcctactggtcaagttcattcaagcatatctctatcactatccagcatcacaagagatacaactcatccagattatcaagattgcggactgtcacccgtctttctatcagcagaaccttgggactcgactttggagaccagcagtccacgagcaagggacaaagctaagatgagatatgaggaaaaaaaaaaactcgcacgtatgtctctacactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009892 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022603 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0060688 GO:0065007 GO:0080090 GO:0140110 GO:1900618 GO:1903506 GO:1905428 GO:2000026 GO:2000028 GO:2000032 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT zf-B_box

Protein Analysis

394

Amino Acids

42.76

Weight (kDa)

4.87

Isoelectric Point (pI)

59.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21880 AT3G21880 AT3G21880 AT4G15250
fragaria_vesca	FvH4_6g43570
malus_domestica	MD09G1104700.v1.1
prunus_persica	Prupe.3G220900_v2.0.a1
pyrus_communis	pycom09g02770 pycom17g08960 pycom17g08970 pycom17g08990
rosa_chinensis	RchiOBHm_Chr2g0160151
rosa_laevigata	RLG00000021200
rosa_multiflora	Rmu_sc0000403.1_g000012
rosa_roxburghii	Rroxscaffold_2G00090010
rosa_rugosa	Rorug02G0481400.1 Rorug02G0481500.1 Rorug02G0481600 Rorug02G0481700 Rorug02G0481800 Rorug02G0481900
rosa_samantha	Rh2AG547400 Rh2BG560600 Rh2CG531000 Rh2DG569300
rosa_wichuraiana	Rw2G045260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	189
AccII	CGCG	1 cut(s)	58
AciI	CCGC	2 cut(s)	260, 1053
AclWI	GGATC	1 cut(s)	37
AcsI	RAATTY	3 cut(s)	249, 583, 600
AfaI	GTAC	4 cut(s)	36, 432, 451, 835
AfiI	CCNNNNNNNGG	1 cut(s)	271
AflIII	ACRYGT	1 cut(s)	132
AgsI	TTSAA	5 cut(s)	269, 424, 582, 662, 990
AhdI	GACNNNNNGTC	1 cut(s)	1110
AjnI	CCWGG	1 cut(s)	120
AjuI	GAANNNNNNNTTGG	2 cut(s)	562, 594
AluBI	AGCT	4 cut(s)	281, 676, 684, 1133
AluI	AGCT	4 cut(s)	281, 676, 684, 1133
Alw26I	GTCTC	3 cut(s)	635, 1097, 1179
AlwI	GGATC	1 cut(s)	37
AlwNI	CAGNNNCTG	1 cut(s)	284
AoxI	GGCC	1 cut(s)	474
ApeKI	GCWGC	3 cut(s)	684, 912, 936
ApoI	RAATTY	3 cut(s)	249, 583, 600
AseI	ATTAAT	3 cut(s)	740, 962, 966
AspLEI	GCGC	1 cut(s)	58
AspS9I	GGNCC	5 cut(s)	262, 475, 695, 745, 779
AsuHPI	GGTGA	4 cut(s)	340, 757, 804, 1053
AvaII	GGWCC	4 cut(s)	262, 695, 745, 779
AxyI	CCTNAGG	1 cut(s)	549
BaeGI	GKGCMC	1 cut(s)	192
BanI	GGYRCC	1 cut(s)	189
BauI	CACGAG	1 cut(s)	1116
BbvI	GCAGC	3 cut(s)	671, 924, 948
BccI	CCATC	7 cut(s)	20, 466, 487, 502, 602, 713, 823
BceAI	ACGGC	1 cut(s)	451
BcgI	CGANNNNNNTGC	2 cut(s)	547, 581
BciT130I	CCWGG	1 cut(s)	122
BclI	TGATCA	1 cut(s)	97
BcoDI	GTCTC	3 cut(s)	635, 1097, 1179
BfaI	CTAG	4 cut(s)	434, 596, 653, 930
BfmI	CTRYAG	1 cut(s)	910
BglII	AGATCT	1 cut(s)	592
BisI	GCNGC	3 cut(s)	685, 913, 937
BlsI	GCNGC	3 cut(s)	686, 914, 938
BmcAI	AGTACT	1 cut(s)	432
Bme1390I	CCNGG	1 cut(s)	122
Bme18I	GGWCC	4 cut(s)	262, 695, 745, 779
BmeRI	GACNNNNNGTC	1 cut(s)	1110
BmgT120I	GGNCC	5 cut(s)	262, 475, 695, 745, 779
BmiI	GGNNCC	2 cut(s)	191, 477
BmrFI	CCNGG	1 cut(s)	122
BmrI	ACTGGG	1 cut(s)	875
BmsI	GCATC	8 cut(s)	107, 321, 398, 519, 555, 818, 864, 1023
BmuI	ACTGGG	1 cut(s)	875
BpmI	CTGGAG	1 cut(s)	974
BsaAI	YACGTR	1 cut(s)	1169
BsaI	GGTCTC	2 cut(s)	635, 1097
BsaJI	CCNNGG	3 cut(s)	467, 837, 1085
Bsc4I	CCNNNNNNNGG	1 cut(s)	271
Bse1I	ACTGG	2 cut(s)	881, 979
Bse21I	CCTNAGG	1 cut(s)	549
Bse3DI	GCAATG	2 cut(s)	100, 619
BseBI	CCWGG	1 cut(s)	122
BseDI	CCNNGG	3 cut(s)	467, 837, 1085
BseGI	GGATG	8 cut(s)	130, 477, 510, 613, 646, 724, 851, 1033
BseLI	CCNNNNNNNGG	1 cut(s)	271
BseMI	GCAATG	2 cut(s)	100, 619
BseMII	CTCAG	3 cut(s)	54, 228, 563
BseNI	ACTGG	2 cut(s)	881, 979
BseSI	GKGCMC	1 cut(s)	192
BseXI	GCAGC	3 cut(s)	671, 924, 948
Bsh1236I	CGCG	1 cut(s)	58
BshFI	GGCC	1 cut(s)	476
BshNI	GGYRCC	1 cut(s)	189
BslFI	GGGAC	2 cut(s)	1103, 1139
BslI	CCNNNNNNNGG	1 cut(s)	271
BsmAI	GTCTC	3 cut(s)	635, 1097, 1179
BsmFI	GGGAC	2 cut(s)	1103, 1139
BsmI	GAATGC	1 cut(s)	895
BsnI	GGCC	1 cut(s)	476
Bso31I	GGTCTC	2 cut(s)	635, 1097
Bsp1286I	GDGCHC	1 cut(s)	192
Bsp1407I	TGTACA	1 cut(s)	34
Bsp143I	GATC	5 cut(s)	29, 97, 529, 592, 616
BspACI	CCGC	2 cut(s)	260, 1053
BspANI	GGCC	1 cut(s)	476
BspCNI	CTCAG	3 cut(s)	53, 229, 562
BspFNI	CGCG	1 cut(s)	58
BspHI	TCATGA	1 cut(s)	921
BspLI	GGNNCC	2 cut(s)	191, 477
BspMAI	CTGCAG	1 cut(s)	914
BspPI	GGATC	1 cut(s)	37
BspT107I	GGYRCC	1 cut(s)	189
BspTNI	GGTCTC	2 cut(s)	635, 1097
BsrDI	GCAATG	2 cut(s)	100, 619
BsrGI	TGTACA	1 cut(s)	34
BsrI	ACTGG	2 cut(s)	881, 979
BssECI	CCNNGG	3 cut(s)	467, 837, 1085
BssMI	GATC	5 cut(s)	29, 97, 529, 592, 616
BssSI	CACGAG	1 cut(s)	1116
BssT1I	CCWWGG	1 cut(s)	1085
Bst2BI	CACGAG	1 cut(s)	1116
Bst2UI	CCWGG	1 cut(s)	122
Bst4CI	ACNGT	9 cut(s)	23, 112, 194, 365, 734, 788, 838, 904, 1059
BstAUI	TGTACA	1 cut(s)	34
BstBAI	YACGTR	1 cut(s)	1169
BstC8I	GCNNGC	4 cut(s)	7, 105, 415, 917
BstDEI	CTNAG	4 cut(s)	40, 237, 549, 1134
BstDSI	CCRYGG	2 cut(s)	467, 837
BstF5I	GGATG	8 cut(s)	130, 477, 510, 613, 646, 724, 851, 1033
BstFNI	CGCG	1 cut(s)	58
BstHHI	GCGC	1 cut(s)	58
BstKTI	GATC	5 cut(s)	32, 100, 532, 595, 619
BstMAI	GTCTC	3 cut(s)	635, 1097, 1179
BstMBI	GATC	5 cut(s)	29, 97, 529, 592, 616
BstMWI	GCNNNNNNNGC	2 cut(s)	219, 482
BstNI	CCWGG	1 cut(s)	122
BstNSI	RCATGY	1 cut(s)	136
BstSCI	CCNGG	1 cut(s)	120
BstSFI	CTRYAG	1 cut(s)	910
BstSLI	GKGCMC	1 cut(s)	192
BstUI	CGCG	1 cut(s)	58
BstV1I	GCAGC	3 cut(s)	671, 924, 948
BstX2I	RGATCY	2 cut(s)	29, 592
BstYI	RGATCY	2 cut(s)	29, 592
Bsu36I	CCTNAGG	1 cut(s)	549
BsuRI	GGCC	1 cut(s)	476
BtgI	CCRYGG	2 cut(s)	467, 837
BtsCI	GGATG	8 cut(s)	130, 477, 510, 613, 646, 724, 851, 1033
BtsI	GCAGTG	1 cut(s)	307
BtsIMutI	CAGTG	4 cut(s)	307, 793, 888, 900
Cac8I	GCNNGC	4 cut(s)	7, 105, 415, 917
CaiI	CAGNNNCTG	1 cut(s)	284
CciI	TCATGA	1 cut(s)	921
CfoI	GCGC	1 cut(s)	58
Cfr13I	GGNCC	5 cut(s)	262, 475, 695, 745, 779
CseI	GACGC	1 cut(s)	395
Csp6I	GTAC	4 cut(s)	35, 431, 450, 834
CviAII	CATG	3 cut(s)	133, 637, 922
CviQI	GTAC	4 cut(s)	35, 431, 450, 834
DdeI	CTNAG	4 cut(s)	40, 237, 549, 1134
DpnI	GATC	5 cut(s)	31, 99, 531, 594, 618
DpnII	GATC	5 cut(s)	29, 97, 529, 592, 616
DraI	TTTAAA	1 cut(s)	589
DriI	GACNNNNNGTC	1 cut(s)	1110
Eam1105I	GACNNNNNGTC	1 cut(s)	1110
Eco130I	CCWWGG	1 cut(s)	1085
Eco31I	GGTCTC	2 cut(s)	635, 1097
Eco47I	GGWCC	4 cut(s)	262, 695, 745, 779
Eco81I	CCTNAGG	1 cut(s)	549
EcoO109I	RGGNCCY	1 cut(s)	695
EcoRI	GAATTC	1 cut(s)	600
EcoRII	CCWGG	1 cut(s)	120
EcoT14I	CCWWGG	1 cut(s)	1085
ErhI	CCWWGG	1 cut(s)	1085
FaeI	CATG	3 cut(s)	136, 640, 925
FaqI	GGGAC	2 cut(s)	1103, 1139
FatI	CATG	3 cut(s)	132, 636, 921
FbaI	TGATCA	1 cut(s)	97
Fnu4HI	GCNGC	3 cut(s)	685, 913, 937
FokI	GGATG	8 cut(s)	137, 484, 497, 620, 653, 731, 838, 1020
Fsp4HI	GCNGC	3 cut(s)	685, 913, 937
FspBI	CTAG	4 cut(s)	434, 596, 653, 930
GlaI	GCGC	1 cut(s)	57
GluI	GCNGC	3 cut(s)	685, 913, 937
GsuI	CTGGAG	1 cut(s)	974
HaeIII	GGCC	1 cut(s)	476
HgaI	GACGC	1 cut(s)	395
HhaI	GCGC	1 cut(s)	58
Hin1II	CATG	3 cut(s)	136, 640, 925
Hin6I	GCGC	1 cut(s)	56
HinP1I	GCGC	1 cut(s)	56
HinfI	GANTC	8 cut(s)	160, 311, 440, 490, 554, 770, 925, 1091
HphI	GGTGA	4 cut(s)	340, 757, 804, 1053
Hpy166II	GTNNAC	4 cut(s)	37, 834, 907, 1115
Hpy188I	TCNGA	3 cut(s)	238, 504, 865
Hpy188III	TCNNGA	8 cut(s)	246, 551, 605, 702, 922, 953, 1037, 1046
Hpy8I	GTNNAC	4 cut(s)	37, 834, 907, 1115
Hpy99I	CGWCG	1 cut(s)	232
HpyAV	CCTTC	4 cut(s)	54, 263, 620, 708
HpyCH4III	ACNGT	9 cut(s)	23, 112, 194, 365, 734, 788, 838, 904, 1059
HpyCH4IV	ACGT	3 cut(s)	70, 657, 1168
HpyCH4V	TGCA	7 cut(s)	93, 107, 354, 510, 525, 912, 936
HpyF10VI	GCNNNNNNNGC	2 cut(s)	219, 482
HpyF3I	CTNAG	4 cut(s)	40, 237, 549, 1134
HpySE526I	ACGT	3 cut(s)	70, 657, 1168
Hsp92II	CATG	3 cut(s)	136, 640, 925
HspAI	GCGC	1 cut(s)	56
Ksp22I	TGATCA	1 cut(s)	97
Kzo9I	GATC	5 cut(s)	29, 97, 529, 592, 616
LmnI	GCTCC	1 cut(s)	370
Lsp1109I	GCAGC	3 cut(s)	671, 924, 948
LweI	GCATC	8 cut(s)	107, 321, 398, 519, 555, 818, 864, 1023
MaeI	CTAG	4 cut(s)	434, 596, 653, 930
MaeII	ACGT	3 cut(s)	70, 657, 1168
MaeIII	GTNAC	8 cut(s)	175, 194, 312, 359, 383, 763, 788, 1059
MalI	GATC	5 cut(s)	31, 99, 531, 594, 618
MboI	GATC	5 cut(s)	29, 97, 529, 592, 616
MboII	GAAGA	2 cut(s)	384, 570
MflI	RGATCY	2 cut(s)	29, 592
MhlI	GDGCHC	1 cut(s)	192
MluCI	AATT	6 cut(s)	249, 349, 445, 583, 600, 963
MlyI	GAGTC	5 cut(s)	320, 449, 563, 779, 1085
MmeI	TCCRAC	1 cut(s)	708
MnlI	CCTC	5 cut(s)	558, 709, 792, 949, 1141
MseI	TTAA	5 cut(s)	17, 588, 740, 962, 966
MslI	CAYNNNNRTG	1 cut(s)	168
MspR9I	CCNGG	1 cut(s)	122
Mva1269I	GAATGC	1 cut(s)	895
MvaI	CCWGG	1 cut(s)	122
MvnI	CGCG	1 cut(s)	58
MwoI	GCNNNNNNNGC	2 cut(s)	219, 482
NdeII	GATC	5 cut(s)	29, 97, 529, 592, 616
NlaIII	CATG	3 cut(s)	136, 640, 925
NlaIV	GGNNCC	2 cut(s)	191, 477
NmuCI	GTSAC	5 cut(s)	312, 383, 763, 788, 1059
NspI	RCATGY	1 cut(s)	136
PacI	TTAATTAA	1 cut(s)	966
PagI	TCATGA	1 cut(s)	921
PciI	ACATGT	1 cut(s)	132
PcsI	WCGNNNNNNNCGW	1 cut(s)	224
PctI	GAATGC	1 cut(s)	895
PfeI	GAWTC	3 cut(s)	160, 490, 925
PkrI	GCNGC	3 cut(s)	686, 914, 938
PleI	GAGTC	5 cut(s)	319, 448, 562, 778, 1085
PpsI	GAGTC	5 cut(s)	319, 448, 562, 778, 1085
Ppu21I	YACGTR	1 cut(s)	1169
PpuMI	RGGWCCY	1 cut(s)	695
PscI	ACATGT	1 cut(s)	132
PshBI	ATTAAT	3 cut(s)	740, 962, 966
Psp5II	RGGWCCY	1 cut(s)	695
Psp6I	CCWGG	1 cut(s)	120
PspGI	CCWGG	1 cut(s)	120
PspN4I	GGNNCC	2 cut(s)	191, 477
PspPI	GGNCC	5 cut(s)	262, 475, 695, 745, 779
PspPPI	RGGWCCY	1 cut(s)	695
PstI	CTGCAG	1 cut(s)	914
PstNI	CAGNNNCTG	1 cut(s)	284
PsuI	RGATCY	2 cut(s)	29, 592
RsaI	GTAC	4 cut(s)	36, 432, 451, 835
RsaNI	GTAC	4 cut(s)	35, 431, 450, 834
RseI	CAYNNNNRTG	1 cut(s)	168
SaqAI	TTAA	5 cut(s)	17, 588, 740, 962, 966
SatI	GCNGC	3 cut(s)	685, 913, 937
Sau3AI	GATC	5 cut(s)	29, 97, 529, 592, 616
Sau96I	GGNCC	5 cut(s)	262, 475, 695, 745, 779
ScaI	AGTACT	1 cut(s)	432
SchI	GAGTC	5 cut(s)	320, 449, 563, 779, 1085
ScrFI	CCNGG	1 cut(s)	122
SduI	GDGCHC	1 cut(s)	192
SfaNI	GCATC	8 cut(s)	107, 321, 398, 519, 555, 818, 864, 1023
SfcI	CTRYAG	1 cut(s)	910
SinI	GGWCC	4 cut(s)	262, 695, 745, 779
SmiMI	CAYNNNNRTG	1 cut(s)	168
Sse9I	AATT	6 cut(s)	249, 349, 445, 583, 600, 963
SsiI	CCGC	2 cut(s)	260, 1053
SspMI	CTAG	4 cut(s)	434, 596, 653, 930
StyD4I	CCNGG	1 cut(s)	120
StyI	CCWWGG	1 cut(s)	1085
TaaI	ACNGT	9 cut(s)	23, 112, 194, 365, 734, 788, 838, 904, 1059
TaiI	ACGT	3 cut(s)	73, 660, 1171
TaqI	TCGA	4 cut(s)	115, 245, 557, 1094
TasI	AATT	6 cut(s)	249, 349, 445, 583, 600, 963
TatI	WGTACW	3 cut(s)	34, 430, 449
TfiI	GAWTC	3 cut(s)	160, 490, 925
Tru1I	TTAA	5 cut(s)	17, 588, 740, 962, 966
Tru9I	TTAA	5 cut(s)	17, 588, 740, 962, 966
TscAI	CASTG	4 cut(s)	307, 793, 888, 907
TseFI	GTSAC	5 cut(s)	312, 383, 763, 788, 1059
TseI	GCWGC	3 cut(s)	684, 912, 936
Tsp45I	GTSAC	5 cut(s)	312, 383, 763, 788, 1059
TspDTI	ATGAA	4 cut(s)	441, 902, 938, 974
TspGWI	ACGGA	1 cut(s)	216
TspRI	CASTG	4 cut(s)	307, 793, 888, 907
VpaK11BI	GGWCC	4 cut(s)	262, 695, 745, 779
VspI	ATTAAT	3 cut(s)	740, 962, 966
XapI	RAATTY	3 cut(s)	249, 583, 600
XceI	RCATGY	1 cut(s)	136
XspI	CTAG	4 cut(s)	434, 596, 653, 930
ZrmI	AGTACT	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.