Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006580

Physical Location & Seq

Genomic Coordinates Reverse (-)

8709767 .. 8711526

Gene Structure 1760 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G15250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGAGGCTCGATGTGACTTTTGTGGAACCGAAAAAGCATTAATCTACTGCAAATCTGATTCGGCTAAACTTTGTTTAAACTGTGACGTTAATGTACACTCAGCGAATCCTCTGTCTCAAAGACACACGCGATCTCTACTCTGCGAGAAATGTTCCTTACAACCCACGGCAGTACACTGTATGAACGAAAATGTTTCTCTTTGCCAAGGATGTCAGTGGACCGCTAGTAACTGCACTGGTTTAGGACACAGACTTCAGAGTCTGAACCCTTACTCTGATTGTCCTTCTCCATCAGATTTCGGCAAGATCTGGTCTTCAACTTTAGAACCTTCTGTCACAAGTTTGGTCTCTCCATTTTCTGATACCCTGCTCCAGGAATTAGACGATTGGAATGGTTCATCAACTTCCGTGGTTACACAAACTCAGAACCTTAAAGACTATTCTTCTTTCTTTCCTATGGAATCTAATCTTCCAAAAGTGATAGAAGAGGAATGTTCTGGTTTGGATCTATGCGAAGGGATAAACTTAGATGATGCGCCGTTGAATTTCAACGCAAGCAATGATATAATCGGATGTTCATCACTTGACAATACCAAATGTTACGAGTACGAGGATTCTTTTAAGGAAGAGAATAACATTGGCCTTCCTTCATTACTGCTTCCTACTTTATCCGGGAACGTTGTACCGAACATGTCACTTTCGATGTCTAACCTCACAGGAGAAAGCAATGCGACTGATTACCAAGATTGCGGAATTTCACCAGGGTTTCTCATAGGAGATTCGCCATGGGAATCGAATGTTGAAGTTAGTTTTAATCCAAAATTAAGGGATGAGGCTAAAAAGAGATACAAACAAAAGAAATCAAAGCGCATGTTTGGGAAGCAAATAAGATATGCATCACGCAAAGCCAGAGCTGATACGAGAAAACGGGTCAAAGGGAGATTTGTAAAATCTGGAGAAACTTTTGAGTATGATCCGTCACTGGTGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009892 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022603 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0060688 GO:0065007 GO:0080090 GO:0140110 GO:1900618 GO:1903506 GO:1905428 GO:2000026 GO:2000028 GO:2000032 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT zf-B_box

Protein Analysis

330

Amino Acids

36.62

Weight (kDa)

5.2

Isoelectric Point (pI)

48.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-B_box	PF00643	3 - 45	1.2e-06	B-box zinc finger
CCT	PF06203	276 - 318	8.2e-17	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21880 AT3G21880 AT3G21880 AT4G15250
fragaria_vesca	FvH4_6g43570
malus_domestica	MD09G1104700.v1.1
prunus_persica	Prupe.3G220900_v2.0.a1
pyrus_communis	pycom09g02770 pycom17g08960 pycom17g08970 pycom17g08990
rosa_chinensis	RchiOBHm_Chr2g0160151
rosa_laevigata	RLG00000021200
rosa_multiflora	Rmu_sc0000403.1_g000012
rosa_roxburghii	Rroxscaffold_2G00090010
rosa_rugosa	Rorug02G0481400.1 Rorug02G0481500.1 Rorug02G0481600 Rorug02G0481700 Rorug02G0481800 Rorug02G0481900
rosa_samantha	Rh2AG547400 Rh2BG560600 Rh2CG531000 Rh2DG569300
rosa_wichuraiana	Rw2G045260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	258
AccII	CGCG	1 cut(s)	130
AciI	CCGC	2 cut(s)	222, 750
AclI	AACGTT	1 cut(s)	678
AclWI	GGATC	2 cut(s)	513, 968
AcsI	RAATTY	2 cut(s)	544, 753
AcuI	CTGAAG	1 cut(s)	239
AfaI	GTAC	4 cut(s)	96, 174, 608, 684
AfiI	CCNNNNNNNGG	1 cut(s)	373
AflIII	ACRYGT	1 cut(s)	690
AgsI	TTSAA	4 cut(s)	318, 544, 550, 803
AjnI	CCWGG	2 cut(s)	372, 760
AluBI	AGCT	1 cut(s)	914
AluI	AGCT	1 cut(s)	914
Alw26I	GTCTC	2 cut(s)	120, 352
AlwI	GGATC	2 cut(s)	513, 968
AlwNI	CAGNNNCTG	1 cut(s)	262
AoxI	GGCC	1 cut(s)	640
ApoI	RAATTY	2 cut(s)	544, 753
ArsI	GACNNNNNNTTYG	2 cut(s)	98, 130
AseI	ATTAAT	1 cut(s)	41
AspLEI	GCGC	2 cut(s)	538, 870
AspS9I	GGNCC	1 cut(s)	219
AsuC2I	CCSGG	1 cut(s)	673
AsuHPI	GGTGA	1 cut(s)	750
AvaII	GGWCC	1 cut(s)	219
BbsI	GAAGAC	1 cut(s)	306
BccI	CCATC	1 cut(s)	298
BceAI	ACGGC	2 cut(s)	183, 523
BciT130I	CCWGG	2 cut(s)	374, 762
BcnI	CCSGG	1 cut(s)	673
BcoDI	GTCTC	2 cut(s)	120, 352
BfaI	CTAG	1 cut(s)	225
BglII	AGATCT	1 cut(s)	306
Bme1390I	CCNGG	3 cut(s)	374, 673, 762
Bme18I	GGWCC	1 cut(s)	219
BmgT120I	GGNCC	1 cut(s)	219
BmiI	GGNNCC	1 cut(s)	28
BmrFI	CCNGG	3 cut(s)	374, 673, 762
BmsI	GCATC	2 cut(s)	523, 905
BpiI	GAAGAC	1 cut(s)	306
BpmI	CTGGAG	2 cut(s)	356, 975
BpuMI	CCSGG	1 cut(s)	673
BsaBI	GATNNNNATC	2 cut(s)	577, 895
BsaI	GGTCTC	1 cut(s)	352
BsaJI	CCNNGG	5 cut(s)	165, 205, 408, 761, 785
Bsc4I	CCNNNNNNNGG	1 cut(s)	373
Bse1I	ACTGG	2 cut(s)	241, 987
Bse3DI	GCAATG	2 cut(s)	565, 733
Bse8I	GATNNNNATC	2 cut(s)	577, 895
BseBI	CCWGG	2 cut(s)	374, 762
BseDI	CCNNGG	5 cut(s)	165, 205, 408, 761, 785
BseGI	GGATG	3 cut(s)	215, 578, 835
BseJI	GATNNNNATC	2 cut(s)	577, 895
BseLI	CCNNNNNNNGG	1 cut(s)	373
BseMI	GCAATG	2 cut(s)	565, 733
BseMII	CTCAG	2 cut(s)	114, 437
BseNI	ACTGG	2 cut(s)	241, 987
BsgI	GTGCAG	1 cut(s)	217
Bsh1236I	CGCG	1 cut(s)	130
BshFI	GGCC	1 cut(s)	642
BsiSI	CCGG	1 cut(s)	672
BslI	CCNNNNNNNGG	1 cut(s)	373
BsmAI	GTCTC	2 cut(s)	120, 352
BsnI	GGCC	1 cut(s)	642
Bso31I	GGTCTC	1 cut(s)	352
Bsp1407I	TGTACA	1 cut(s)	94
Bsp143I	GATC	4 cut(s)	131, 306, 505, 973
Bsp19I	CCATGG	1 cut(s)	785
BspACI	CCGC	2 cut(s)	222, 750
BspANI	GGCC	1 cut(s)	642
BspCNI	CTCAG	2 cut(s)	113, 436
BspFNI	CGCG	1 cut(s)	130
BspLI	GGNNCC	1 cut(s)	28
BspPI	GGATC	2 cut(s)	513, 968
BspTNI	GGTCTC	1 cut(s)	352
BsrDI	GCAATG	2 cut(s)	565, 733
BsrGI	TGTACA	1 cut(s)	94
BsrI	ACTGG	2 cut(s)	241, 987
BssECI	CCNNGG	5 cut(s)	165, 205, 408, 761, 785
BssMI	GATC	4 cut(s)	131, 306, 505, 973
BssT1I	CCWWGG	2 cut(s)	205, 785
Bst2UI	CCWGG	2 cut(s)	374, 762
Bst4CI	ACNGT	2 cut(s)	83, 179
Bst6I	CTCTTC	2 cut(s)	480, 621
BstAUI	TGTACA	1 cut(s)	94
BstC8I	GCNNGC	1 cut(s)	556
BstDEI	CTNAG	3 cut(s)	100, 423, 526
BstDSI	CCRYGG	3 cut(s)	165, 408, 785
BstENI	CCTNNNNNAGG	1 cut(s)	371
BstF5I	GGATG	3 cut(s)	215, 578, 835
BstFNI	CGCG	1 cut(s)	130
BstHHI	GCGC	2 cut(s)	538, 870
BstKTI	GATC	4 cut(s)	134, 309, 508, 976
BstMAI	GTCTC	2 cut(s)	120, 352
BstMBI	GATC	4 cut(s)	131, 306, 505, 973
BstNI	CCWGG	2 cut(s)	374, 762
BstNSI	RCATGY	2 cut(s)	694, 874
BstSCI	CCNGG	3 cut(s)	372, 671, 760
BstUI	CGCG	1 cut(s)	130
BstV2I	GAAGAC	1 cut(s)	306
BstX2I	RGATCY	2 cut(s)	306, 505
BstYI	RGATCY	2 cut(s)	306, 505
BsuRI	GGCC	1 cut(s)	642
BtgI	CCRYGG	3 cut(s)	165, 408, 785
BtsCI	GGATG	3 cut(s)	215, 578, 835
BtsIMutI	CAGTG	4 cut(s)	175, 221, 234, 980
Cac8I	GCNNGC	1 cut(s)	556
CaiI	CAGNNNCTG	1 cut(s)	262
CfoI	GCGC	2 cut(s)	538, 870
Cfr13I	GGNCC	1 cut(s)	219
Csp6I	GTAC	4 cut(s)	95, 173, 607, 683
CspCI	CAANNNNNGTGG	2 cut(s)	390, 425
CviAII	CATG	3 cut(s)	691, 786, 871
CviJI	RGCY	6 cut(s)	8, 65, 642, 836, 908, 914
CviKI_1	RGCY	6 cut(s)	8, 65, 642, 836, 908, 914
CviQI	GTAC	4 cut(s)	95, 173, 607, 683
DdeI	CTNAG	3 cut(s)	100, 423, 526
DpnI	GATC	4 cut(s)	133, 308, 507, 975
DpnII	GATC	4 cut(s)	131, 306, 505, 973
DraI	TTTAAA	1 cut(s)	78
DrdI	GACNNNNNNGTC	1 cut(s)	258
DseDI	GACNNNNNNGTC	1 cut(s)	258
Eam1104I	CTCTTC	2 cut(s)	480, 621
EarI	CTCTTC	2 cut(s)	480, 621
Eco130I	CCWWGG	2 cut(s)	205, 785
Eco31I	GGTCTC	1 cut(s)	352
Eco47I	GGWCC	1 cut(s)	219
Eco57I	CTGAAG	1 cut(s)	239
EcoNI	CCTNNNNNAGG	1 cut(s)	371
EcoRII	CCWGG	2 cut(s)	372, 760
EcoT14I	CCWWGG	2 cut(s)	205, 785
EcoT22I	ATGCAT	1 cut(s)	898
ErhI	CCWWGG	2 cut(s)	205, 785
FaeI	CATG	3 cut(s)	694, 789, 874
FatI	CATG	3 cut(s)	690, 785, 870
FokI	GGATG	3 cut(s)	222, 585, 842
FspBI	CTAG	1 cut(s)	225
GlaI	GCGC	2 cut(s)	537, 869
GsuI	CTGGAG	2 cut(s)	356, 975
HaeIII	GGCC	1 cut(s)	642
HapII	CCGG	1 cut(s)	672
HhaI	GCGC	2 cut(s)	538, 870
Hin1II	CATG	3 cut(s)	694, 789, 874
Hin6I	GCGC	2 cut(s)	536, 868
HinP1I	GCGC	2 cut(s)	536, 868
HinfI	GANTC	7 cut(s)	59, 106, 259, 461, 614, 779, 791
HpaII	CCGG	1 cut(s)	672
HphI	GGTGA	1 cut(s)	750
Hpy166II	GTNNAC	3 cut(s)	97, 175, 219
Hpy188I	TCNGA	8 cut(s)	58, 258, 264, 277, 295, 361, 426, 572
Hpy188III	TCNNGA	1 cut(s)	954
Hpy8I	GTNNAC	3 cut(s)	97, 175, 219
HpyAV	CCTTC	5 cut(s)	294, 339, 509, 653, 657
HpyCH4III	ACNGT	2 cut(s)	83, 179
HpyCH4IV	ACGT	2 cut(s)	87, 678
HpyCH4V	TGCA	3 cut(s)	51, 234, 896
HpyF3I	CTNAG	3 cut(s)	100, 423, 526
HpySE526I	ACGT	2 cut(s)	87, 678
Hsp92II	CATG	3 cut(s)	694, 789, 874
HspAI	GCGC	2 cut(s)	536, 868
Kzo9I	GATC	4 cut(s)	131, 306, 505, 973
LmnI	GCTCC	1 cut(s)	375
LweI	GCATC	2 cut(s)	523, 905
MaeI	CTAG	1 cut(s)	225
MaeII	ACGT	2 cut(s)	87, 678
MaeIII	GTNAC	8 cut(s)	14, 83, 227, 334, 412, 599, 693, 978
MalI	GATC	4 cut(s)	133, 308, 507, 975
MboI	GATC	4 cut(s)	131, 306, 505, 973
MboII	GAAGA	5 cut(s)	306, 435, 461, 497, 638
MflI	RGATCY	2 cut(s)	306, 505
MluCI	AATT	4 cut(s)	377, 544, 753, 821
MlyI	GAGTC	1 cut(s)	268
MnlI	CCTC	5 cut(s)	120, 481, 604, 722, 826
Mph1103I	ATGCAT	1 cut(s)	898
MseI	TTAA	7 cut(s)	41, 77, 90, 432, 621, 813, 824
MspI	CCGG	1 cut(s)	672
MspR9I	CCNGG	3 cut(s)	374, 673, 762
MssI	GTTTAAAC	1 cut(s)	78
MvaI	CCWGG	2 cut(s)	374, 762
MvnI	CGCG	1 cut(s)	130
NciI	CCSGG	1 cut(s)	673
NcoI	CCATGG	1 cut(s)	785
NdeII	GATC	4 cut(s)	131, 306, 505, 973
NlaIII	CATG	3 cut(s)	694, 789, 874
NlaIV	GGNNCC	1 cut(s)	28
NmuCI	GTSAC	5 cut(s)	14, 83, 334, 693, 978
NsiI	ATGCAT	1 cut(s)	898
NspI	RCATGY	2 cut(s)	694, 874
PciI	ACATGT	1 cut(s)	690
PfeI	GAWTC	6 cut(s)	59, 106, 461, 614, 779, 791
PfoI	TCCNGGA	2 cut(s)	372, 671
PleI	GAGTC	1 cut(s)	267
PmeI	GTTTAAAC	1 cut(s)	78
PpsI	GAGTC	1 cut(s)	267
PscI	ACATGT	1 cut(s)	690
PshBI	ATTAAT	1 cut(s)	41
Psp1406I	AACGTT	1 cut(s)	678
Psp6I	CCWGG	2 cut(s)	372, 760
PspGI	CCWGG	2 cut(s)	372, 760
PspN4I	GGNNCC	1 cut(s)	28
PspPI	GGNCC	1 cut(s)	219
PstNI	CAGNNNCTG	1 cut(s)	262
PsuI	RGATCY	2 cut(s)	306, 505
RsaI	GTAC	4 cut(s)	96, 174, 608, 684
RsaNI	GTAC	4 cut(s)	95, 173, 607, 683
SaqAI	TTAA	7 cut(s)	41, 77, 90, 432, 621, 813, 824
Sau3AI	GATC	4 cut(s)	131, 306, 505, 973
Sau96I	GGNCC	1 cut(s)	219
SchI	GAGTC	1 cut(s)	268
ScrFI	CCNGG	3 cut(s)	374, 673, 762
SetI	ASST	6 cut(s)	90, 331, 432, 681, 714, 916
SfaNI	GCATC	2 cut(s)	523, 905
SinI	GGWCC	1 cut(s)	219
Sse9I	AATT	4 cut(s)	377, 544, 753, 821
SsiI	CCGC	2 cut(s)	222, 750
SspMI	CTAG	1 cut(s)	225
StyD4I	CCNGG	3 cut(s)	372, 671, 760
StyI	CCWWGG	2 cut(s)	205, 785
TaaI	ACNGT	2 cut(s)	83, 179
TaiI	ACGT	2 cut(s)	90, 681
TaqI	TCGA	3 cut(s)	10, 701, 794
TasI	AATT	4 cut(s)	377, 544, 753, 821
TatI	WGTACW	2 cut(s)	94, 172
TfiI	GAWTC	6 cut(s)	59, 106, 461, 614, 779, 791
Tru1I	TTAA	7 cut(s)	41, 77, 90, 432, 621, 813, 824
Tru9I	TTAA	7 cut(s)	41, 77, 90, 432, 621, 813, 824
TscAI	CASTG	4 cut(s)	182, 221, 241, 987
TseFI	GTSAC	5 cut(s)	14, 83, 334, 693, 978
Tsp45I	GTSAC	5 cut(s)	14, 83, 334, 693, 978
TspDTI	ATGAA	4 cut(s)	197, 387, 567, 639
TspGWI	ACGGA	2 cut(s)	397, 966
TspRI	CASTG	4 cut(s)	182, 221, 241, 987
VpaK11BI	GGWCC	1 cut(s)	219
VspI	ATTAAT	1 cut(s)	41
XagI	CCTNNNNNAGG	1 cut(s)	371
XapI	RAATTY	2 cut(s)	544, 753
XceI	RCATGY	2 cut(s)	694, 874
XspI	CTAG	1 cut(s)	225
Zsp2I	ATGCAT	1 cut(s)	898

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.