Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0006580

Physical Location & Seq

Genomic Coordinates Forward (+)

72896178 .. 72897923

Gene Structure 1746 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021200

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

ATGGCTCGCCTTTGCTTAAACTGTGATGGATCTGTACACTCAGCCAATACGTTAGCGCGAAGGCACTCACGTTGGTTTCTATGTGACAAGTGCAATGATCAGCCTGCAACAGTTCGATGCCTGGATGAGAACATGTCCTTGTGCCAAAGTTGTGAGTGGAATCACAATAATGGGGTTACAGGAATGGGGCACCATAACCAAGCAATAAGTTGCTATACGGGCTGTCCGTCTTTGTCTGAGATTTCGAGAATTTGGTCTGCGGTCCTTGAAGGGGGTTCAGCTTCTGGTGGTTTTGGTGGCAGTGGTTGGGAGTCACTTGGGGGTTCGGTGATGCCAAAGAATGAGAATAATTGCATTAGTAACTGTTTGGAGCGTAGAGATAGTGAGGCATCTTCGTTTGGGGTAGTGAGTGCTGGCAAGTTGAATGAAGTATTAGCAGAGTCTAATTGTACTCCCAAGTTTGAGCCATGGATGGCCCCATCTACTATGATTCCATCAAATCCGAACTGCATCCAGCCACAATGCAAAGATCAAGCACCATTCTTGCCTCAGGAGTCGAGCCAGATGCCAAAGCTACAGGGTTCTTCAAATTTTAAAGATCTAGGAATTCAGGAAGGCAATGATCTATGTGAAGGTCTGAACGTGGATGATGTTCCACTAGACGTTGAAAATGACGATGAGCTATTTAGCTGCTCACAAGGTCCTTCCAGATACTCCTTTGAGGATGGAGAGTTGGACTGTCTATTAATGGACCAGAAAAACTTATCAGTCACCGAGTCTAATGGTCCTCACAGTGACAATGCTATACAACAGGCATCACCATCAAGACAACAAGACTGTACCGTGGGATTTCACTCATCCTGTGTGTCAGATAGTGTCATGCCCCCAGTGATGAATGCTGGTAGCACTGTAAACTGCAGCCTACTCATGAATCCTAGTTGCAGCAGAAACATCAATCTGGAGGGATTAATTAATCCTACTGGTCAAGTTCATTCAAGCATATCACTATCACTATCCAGCATCACAAGAGATACAACTCATCCAGATTATCAAGATTGCGGACTGTCACCCGTCTTTCTATCAGCAGAACCTTGGGACTCTACTTTGGAGACCAGCAGTCCACGAGCAAGGGACAAAGCTAAGATGAGATATGAGGAAAAAAAGAAAACTCGCACGTTTGGTAAACAAATAAGGTATGCCTCTAGAAAGGCTAGAGCTGATACCAGAAAACGAGTCAAGGGAAGATTCGTAAAATCCGGTGAAGAATATGATTACGATCCTCTTGTGAGAAGGAGCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009892 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022603 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0060688 GO:0065007 GO:0080090 GO:0140110 GO:1900618 GO:1903506 GO:1905428 GO:2000026 GO:2000028 GO:2000032 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT zf-B_box

Protein Analysis

434

Amino Acids

47.48

Weight (kDa)

5.39

Isoelectric Point (pI)

59.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ANCHR-like_BBOX	PF22586	27 - 64	3.9e-06	ANCHR-like B-box zinc-binding domain
CCT	PF06203	377 - 419	6e-17	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21880 AT3G21880 AT3G21880 AT4G15250
fragaria_vesca	FvH4_6g43570
malus_domestica	MD09G1104700.v1.1
prunus_persica	Prupe.3G220900_v2.0.a1
pyrus_communis	pycom09g02770 pycom17g08960 pycom17g08970 pycom17g08990
rosa_chinensis	RchiOBHm_Chr2g0160151
rosa_laevigata	RLG00000021200
rosa_multiflora	Rmu_sc0000403.1_g000012
rosa_roxburghii	Rroxscaffold_2G00090010
rosa_rugosa	Rorug02G0481400.1 Rorug02G0481500.1 Rorug02G0481600 Rorug02G0481700 Rorug02G0481800 Rorug02G0481900
rosa_samantha	Rh2AG547400 Rh2BG560600 Rh2CG531000 Rh2DG569300
rosa_wichuraiana	Rw2G045260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	189
AccII	CGCG	1 cut(s)	58
AciI	CCGC	2 cut(s)	260, 1059
AclWI	GGATC	2 cut(s)	37, 1271
AcsI	RAATTY	3 cut(s)	249, 589, 606
AfaI	GTAC	3 cut(s)	36, 451, 841
AfiI	CCNNNNNNNGG	1 cut(s)	271
AflIII	ACRYGT	1 cut(s)	132
AgsI	TTSAA	5 cut(s)	269, 424, 588, 668, 996
AhdI	GACNNNNNGTC	1 cut(s)	1116
AjnI	CCWGG	1 cut(s)	120
AluBI	AGCT	7 cut(s)	281, 574, 682, 690, 1139, 1217, 1296
AluI	AGCT	7 cut(s)	281, 574, 682, 690, 1139, 1217, 1296
Alw26I	GTCTC	1 cut(s)	1103
AlwI	GGATC	2 cut(s)	37, 1271
AlwNI	CAGNNNCTG	1 cut(s)	284
AoxI	GGCC	1 cut(s)	474
ApeKI	GCWGC	3 cut(s)	690, 918, 942
ApoI	RAATTY	3 cut(s)	249, 589, 606
AseI	ATTAAT	3 cut(s)	746, 968, 972
AspLEI	GCGC	1 cut(s)	58
AspS9I	GGNCC	5 cut(s)	262, 475, 701, 751, 785
AsuHPI	GGTGA	5 cut(s)	340, 763, 810, 1059, 1271
AvaII	GGWCC	4 cut(s)	262, 701, 751, 785
AxyI	CCTNAGG	1 cut(s)	549
BaeGI	GKGCMC	1 cut(s)	192
BanI	GGYRCC	1 cut(s)	189
BauI	CACGAG	1 cut(s)	1122
BbvI	GCAGC	3 cut(s)	677, 930, 954
BccI	CCATC	6 cut(s)	20, 466, 487, 502, 719, 829
BcgI	CGANNNNNNTGC	2 cut(s)	547, 581
BciT130I	CCWGG	1 cut(s)	122
BclI	TGATCA	1 cut(s)	97
BcoDI	GTCTC	1 cut(s)	1103
BfaI	CTAG	5 cut(s)	602, 659, 936, 1203, 1212
BfmI	CTRYAG	2 cut(s)	575, 916
BglII	AGATCT	1 cut(s)	598
BisI	GCNGC	3 cut(s)	691, 919, 943
BlsI	GCNGC	3 cut(s)	692, 920, 944
Bme1390I	CCNGG	1 cut(s)	122
Bme18I	GGWCC	4 cut(s)	262, 701, 751, 785
BmeRI	GACNNNNNGTC	1 cut(s)	1116
BmgT120I	GGNCC	5 cut(s)	262, 475, 701, 751, 785
BmiI	GGNNCC	2 cut(s)	191, 477
BmrFI	CCNGG	1 cut(s)	122
BmrI	ACTGGG	1 cut(s)	881
BmsI	GCATC	7 cut(s)	107, 321, 398, 519, 555, 824, 1029
BmuI	ACTGGG	1 cut(s)	881
BpmI	CTGGAG	1 cut(s)	980
BsaBI	GATNNNNATC	1 cut(s)	1275
BsaI	GGTCTC	1 cut(s)	1103
BsaJI	CCNNGG	3 cut(s)	467, 843, 1091
BsaWI	WCCGGW	1 cut(s)	1256
Bsc4I	CCNNNNNNNGG	1 cut(s)	271
Bse1I	ACTGG	2 cut(s)	887, 985
Bse21I	CCTNAGG	1 cut(s)	549
Bse3DI	GCAATG	2 cut(s)	100, 625
Bse8I	GATNNNNATC	1 cut(s)	1275
BseBI	CCWGG	1 cut(s)	122
BseDI	CCNNGG	3 cut(s)	467, 843, 1091
BseGI	GGATG	7 cut(s)	130, 477, 510, 652, 730, 857, 1039
BseJI	GATNNNNATC	1 cut(s)	1275
BseLI	CCNNNNNNNGG	1 cut(s)	271
BseMI	GCAATG	2 cut(s)	100, 625
BseMII	CTCAG	3 cut(s)	54, 228, 563
BseNI	ACTGG	2 cut(s)	887, 985
BseSI	GKGCMC	1 cut(s)	192
BseXI	GCAGC	3 cut(s)	677, 930, 954
Bsh1236I	CGCG	1 cut(s)	58
BshFI	GGCC	1 cut(s)	476
BshNI	GGYRCC	1 cut(s)	189
BsiSI	CCGG	1 cut(s)	1257
BslFI	GGGAC	2 cut(s)	1109, 1145
BslI	CCNNNNNNNGG	1 cut(s)	271
BsmAI	GTCTC	1 cut(s)	1103
BsmFI	GGGAC	2 cut(s)	1109, 1145
BsmI	GAATGC	1 cut(s)	901
BsnI	GGCC	1 cut(s)	476
Bso31I	GGTCTC	1 cut(s)	1103
Bsp1286I	GDGCHC	1 cut(s)	192
Bsp1407I	TGTACA	1 cut(s)	34
Bsp143I	GATC	6 cut(s)	29, 97, 529, 598, 622, 1276
Bsp19I	CCATGG	1 cut(s)	467
BspACI	CCGC	2 cut(s)	260, 1059
BspANI	GGCC	1 cut(s)	476
BspCNI	CTCAG	3 cut(s)	53, 229, 562
BspFNI	CGCG	1 cut(s)	58
BspHI	TCATGA	1 cut(s)	927
BspLI	GGNNCC	2 cut(s)	191, 477
BspMAI	CTGCAG	1 cut(s)	920
BspPI	GGATC	2 cut(s)	37, 1271
BspT107I	GGYRCC	1 cut(s)	189
BspTNI	GGTCTC	1 cut(s)	1103
BsrDI	GCAATG	2 cut(s)	100, 625
BsrGI	TGTACA	1 cut(s)	34
BsrI	ACTGG	2 cut(s)	887, 985
BssECI	CCNNGG	3 cut(s)	467, 843, 1091
BssMI	GATC	6 cut(s)	29, 97, 529, 598, 622, 1276
BssSI	CACGAG	1 cut(s)	1122
BssT1I	CCWWGG	2 cut(s)	467, 1091
Bst2BI	CACGAG	1 cut(s)	1122
Bst2UI	CCWGG	1 cut(s)	122
Bst4CI	ACNGT	9 cut(s)	23, 112, 365, 740, 794, 839, 844, 910, 1065
BstAUI	TGTACA	1 cut(s)	34
BstC8I	GCNNGC	3 cut(s)	7, 105, 415
BstDEI	CTNAG	4 cut(s)	40, 237, 549, 1140
BstDSI	CCRYGG	2 cut(s)	467, 843
BstF5I	GGATG	7 cut(s)	130, 477, 510, 652, 730, 857, 1039
BstFNI	CGCG	1 cut(s)	58
BstHHI	GCGC	1 cut(s)	58
BstKTI	GATC	6 cut(s)	32, 100, 532, 601, 625, 1279
BstMAI	GTCTC	1 cut(s)	1103
BstMBI	GATC	6 cut(s)	29, 97, 529, 598, 622, 1276
BstMWI	GCNNNNNNNGC	1 cut(s)	219
BstNI	CCWGG	1 cut(s)	122
BstNSI	RCATGY	1 cut(s)	136
BstSCI	CCNGG	1 cut(s)	120
BstSFI	CTRYAG	2 cut(s)	575, 916
BstSLI	GKGCMC	1 cut(s)	192
BstUI	CGCG	1 cut(s)	58
BstV1I	GCAGC	3 cut(s)	677, 930, 954
BstX2I	RGATCY	2 cut(s)	29, 598
BstYI	RGATCY	2 cut(s)	29, 598
Bsu36I	CCTNAGG	1 cut(s)	549
BsuRI	GGCC	1 cut(s)	476
BtgI	CCRYGG	2 cut(s)	467, 843
BtsCI	GGATG	7 cut(s)	130, 477, 510, 652, 730, 857, 1039
BtsI	GCAGTG	1 cut(s)	307
BtsIMutI	CAGTG	4 cut(s)	307, 799, 894, 906
Cac8I	GCNNGC	3 cut(s)	7, 105, 415
CaiI	CAGNNNCTG	1 cut(s)	284
CciI	TCATGA	1 cut(s)	927
CfoI	GCGC	1 cut(s)	58
Cfr13I	GGNCC	5 cut(s)	262, 475, 701, 751, 785
Csp6I	GTAC	3 cut(s)	35, 450, 840
CviAII	CATG	4 cut(s)	133, 468, 880, 928
CviQI	GTAC	3 cut(s)	35, 450, 840
DdeI	CTNAG	4 cut(s)	40, 237, 549, 1140
DpnI	GATC	6 cut(s)	31, 99, 531, 600, 624, 1278
DpnII	GATC	6 cut(s)	29, 97, 529, 598, 622, 1276
DraI	TTTAAA	1 cut(s)	595
DriI	GACNNNNNGTC	1 cut(s)	1116
Eam1105I	GACNNNNNGTC	1 cut(s)	1116
Eco130I	CCWWGG	2 cut(s)	467, 1091
Eco31I	GGTCTC	1 cut(s)	1103
Eco47I	GGWCC	4 cut(s)	262, 701, 751, 785
Eco81I	CCTNAGG	1 cut(s)	549
EcoO109I	RGGNCCY	1 cut(s)	701
EcoRI	GAATTC	1 cut(s)	606
EcoRII	CCWGG	1 cut(s)	120
EcoT14I	CCWWGG	2 cut(s)	467, 1091
ErhI	CCWWGG	2 cut(s)	467, 1091
FaeI	CATG	4 cut(s)	136, 471, 883, 931
FaqI	GGGAC	2 cut(s)	1109, 1145
FatI	CATG	4 cut(s)	132, 467, 879, 927
FbaI	TGATCA	1 cut(s)	97
Fnu4HI	GCNGC	3 cut(s)	691, 919, 943
FokI	GGATG	7 cut(s)	137, 484, 497, 659, 737, 844, 1026
Fsp4HI	GCNGC	3 cut(s)	691, 919, 943
FspBI	CTAG	5 cut(s)	602, 659, 936, 1203, 1212
GlaI	GCGC	1 cut(s)	57
GluI	GCNGC	3 cut(s)	691, 919, 943
GsuI	CTGGAG	1 cut(s)	980
HaeIII	GGCC	1 cut(s)	476
HapII	CCGG	1 cut(s)	1257
HhaI	GCGC	1 cut(s)	58
Hin1II	CATG	4 cut(s)	136, 471, 883, 931
Hin6I	GCGC	1 cut(s)	56
HinP1I	GCGC	1 cut(s)	56
HpaII	CCGG	1 cut(s)	1257
HphI	GGTGA	5 cut(s)	340, 763, 810, 1059, 1271
Hpy166II	GTNNAC	4 cut(s)	37, 913, 1121, 1184
Hpy188I	TCNGA	5 cut(s)	238, 504, 639, 871, 1301
Hpy8I	GTNNAC	4 cut(s)	37, 913, 1121, 1184
HpyAV	CCTTC	6 cut(s)	54, 263, 608, 626, 714, 1284
HpyCH4III	ACNGT	9 cut(s)	23, 112, 365, 740, 794, 839, 844, 910, 1065
HpyCH4IV	ACGT	5 cut(s)	50, 70, 642, 663, 1175
HpyCH4V	TGCA	7 cut(s)	93, 107, 354, 510, 525, 918, 942
HpyF10VI	GCNNNNNNNGC	1 cut(s)	219
HpyF3I	CTNAG	4 cut(s)	40, 237, 549, 1140
HpySE526I	ACGT	5 cut(s)	50, 70, 642, 663, 1175
Hsp92II	CATG	4 cut(s)	136, 471, 883, 931
HspAI	GCGC	1 cut(s)	56
Ksp22I	TGATCA	1 cut(s)	97
Kzo9I	GATC	6 cut(s)	29, 97, 529, 598, 622, 1276
LmnI	GCTCC	2 cut(s)	370, 1293
Lsp1109I	GCAGC	3 cut(s)	677, 930, 954
LweI	GCATC	7 cut(s)	107, 321, 398, 519, 555, 824, 1029
MaeI	CTAG	5 cut(s)	602, 659, 936, 1203, 1212
MaeII	ACGT	5 cut(s)	50, 70, 642, 663, 1175
MaeIII	GTNAC	7 cut(s)	83, 175, 312, 359, 769, 794, 1065
MalI	GATC	6 cut(s)	31, 99, 531, 600, 624, 1278
MboI	GATC	6 cut(s)	29, 97, 529, 598, 622, 1276
MboII	GAAGA	4 cut(s)	384, 576, 1254, 1274
MflI	RGATCY	2 cut(s)	29, 598
MhlI	GDGCHC	1 cut(s)	192
MluCI	AATT	6 cut(s)	249, 349, 445, 589, 606, 969
MlyI	GAGTC	6 cut(s)	320, 449, 563, 785, 1091, 1242
MmeI	TCCRAC	1 cut(s)	714
MnlI	CCTC	8 cut(s)	379, 558, 715, 798, 955, 1147, 1210, 1290
MseI	TTAA	5 cut(s)	17, 594, 746, 968, 972
MslI	CAYNNNNRTG	1 cut(s)	168
MspI	CCGG	1 cut(s)	1257
MspR9I	CCNGG	1 cut(s)	122
Mva1269I	GAATGC	1 cut(s)	901
MvaI	CCWGG	1 cut(s)	122
MvnI	CGCG	1 cut(s)	58
MwoI	GCNNNNNNNGC	1 cut(s)	219
NcoI	CCATGG	1 cut(s)	467
NdeII	GATC	6 cut(s)	29, 97, 529, 598, 622, 1276
NlaIII	CATG	4 cut(s)	136, 471, 883, 931
NlaIV	GGNNCC	2 cut(s)	191, 477
NmuCI	GTSAC	5 cut(s)	83, 312, 769, 794, 1065
NspI	RCATGY	1 cut(s)	136
PacI	TTAATTAA	1 cut(s)	972
PagI	TCATGA	1 cut(s)	927
PciI	ACATGT	1 cut(s)	132
PcsI	WCGNNNNNNNCGW	1 cut(s)	224
PctI	GAATGC	1 cut(s)	901
PfeI	GAWTC	4 cut(s)	160, 490, 931, 1245
PkrI	GCNGC	3 cut(s)	692, 920, 944
PleI	GAGTC	6 cut(s)	319, 448, 562, 784, 1091, 1241
PpsI	GAGTC	6 cut(s)	319, 448, 562, 784, 1091, 1241
PpuMI	RGGWCCY	1 cut(s)	701
PscI	ACATGT	1 cut(s)	132
PshBI	ATTAAT	3 cut(s)	746, 968, 972
Psp5II	RGGWCCY	1 cut(s)	701
Psp6I	CCWGG	1 cut(s)	120
PspGI	CCWGG	1 cut(s)	120
PspN4I	GGNNCC	2 cut(s)	191, 477
PspPI	GGNCC	5 cut(s)	262, 475, 701, 751, 785
PspPPI	RGGWCCY	1 cut(s)	701
PstI	CTGCAG	1 cut(s)	920
PstNI	CAGNNNCTG	1 cut(s)	284
PsuI	RGATCY	2 cut(s)	29, 598
RsaI	GTAC	3 cut(s)	36, 451, 841
RsaNI	GTAC	3 cut(s)	35, 450, 840
RseI	CAYNNNNRTG	1 cut(s)	168
SaqAI	TTAA	5 cut(s)	17, 594, 746, 968, 972
SatI	GCNGC	3 cut(s)	691, 919, 943
Sau3AI	GATC	6 cut(s)	29, 97, 529, 598, 622, 1276
Sau96I	GGNCC	5 cut(s)	262, 475, 701, 751, 785
SchI	GAGTC	6 cut(s)	320, 449, 563, 785, 1091, 1242
ScrFI	CCNGG	1 cut(s)	122
SduI	GDGCHC	1 cut(s)	192
SfaNI	GCATC	7 cut(s)	107, 321, 398, 519, 555, 824, 1029
SfcI	CTRYAG	2 cut(s)	575, 916
SinI	GGWCC	4 cut(s)	262, 701, 751, 785
SmiMI	CAYNNNNRTG	1 cut(s)	168
Sse9I	AATT	6 cut(s)	249, 349, 445, 589, 606, 969
SsiI	CCGC	2 cut(s)	260, 1059
SspMI	CTAG	5 cut(s)	602, 659, 936, 1203, 1212
StyD4I	CCNGG	1 cut(s)	120
StyI	CCWWGG	2 cut(s)	467, 1091
TaaI	ACNGT	9 cut(s)	23, 112, 365, 740, 794, 839, 844, 910, 1065
TaiI	ACGT	5 cut(s)	53, 73, 645, 666, 1178
TaqI	TCGA	3 cut(s)	115, 245, 557
TasI	AATT	6 cut(s)	249, 349, 445, 589, 606, 969
TatI	WGTACW	2 cut(s)	34, 449
TfiI	GAWTC	4 cut(s)	160, 490, 931, 1245
Tru1I	TTAA	5 cut(s)	17, 594, 746, 968, 972
Tru9I	TTAA	5 cut(s)	17, 594, 746, 968, 972
TscAI	CASTG	4 cut(s)	307, 799, 894, 913
TseFI	GTSAC	5 cut(s)	83, 312, 769, 794, 1065
TseI	GCWGC	3 cut(s)	690, 918, 942
Tsp45I	GTSAC	5 cut(s)	83, 312, 769, 794, 1065
TspDTI	ATGAA	4 cut(s)	441, 908, 944, 980
TspGWI	ACGGA	1 cut(s)	216
TspRI	CASTG	4 cut(s)	307, 799, 894, 913
VpaK11BI	GGWCC	4 cut(s)	262, 701, 751, 785
VspI	ATTAAT	3 cut(s)	746, 968, 972
XapI	RAATTY	3 cut(s)	249, 589, 606
XbaI	TCTAGA	1 cut(s)	1202
XceI	RCATGY	1 cut(s)	136
XspI	CTAG	5 cut(s)	602, 659, 936, 1203, 1212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.